ID: uc010yyq.1_intron_14_0_chr2_120385363_f.5p
GENE: (15)
chr2:120385313-120385562+


(3)
AGO2.ip
(3)
B-CELL
(2)
BREAST
(9)
CELL-LINE
(12)
CERVIX
(1)
HEART
(5)
LIVER
(1)
OTHER
(8)
SKIN
(1)
XRN.ip

Sense strand
TGCCCTTCGCTTTCCCAGACTGCAGCCCACCCCAGGACTCCAACGAGTTGGTAGGTGCCGTCAGGCTTGGGGGCGGGGAGTGGACATGATCATGATCGTGTTGGGCAGATACAAGGCAAGCCCTACCTCAGTCTCAGTCCCTTCACCTCCTCCCAGAGGCTCCAAAGGAAGATGAGGAGAGTATTACCAGTGGAAAACCAGGGATCATCTCCTGCCATCTGCCTTGCTCCTGATACACCTGCACAGAGCT
..............................................................(((...((((((.((((.((.(((((((....))))))).((((.............)))).....)).)))).))))))...)))......................................................................................................
..............................................................63......................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189784SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040041(GSM532926)
G612T. (cervix)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040023(GSM532908)
G575T. (cervix)
SRR189785SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR040019(GSM532904)
G701T. (cervix)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................TCAGTCTCAGTCCCTTCCCG.......................................................................................................2019.000.0017.00-2.00-------------------------------------------
...................................................................TGGGGGCGGGGAGTGGTC.....................................................................................................................................................................1809.003.00-----2.001.00---1.00----1.00----1.00-1.00--1.00-1.00------------------
....................................................................GGGGGCGGGGAGTGGTCG....................................................................................................................................................................189.000.00-3.00------2.00----1.00--1.00-1.00-----------------1.00---------
...............................................................................................................................TCAGTCTCAGTCCCTTCCCGA......................................................................................................218.000.007.00-------------------------------1.00-------------
....................................................................GGGGGCGGGGAGTGGTCGG...................................................................................................................................................................198.000.00-1.00--2.00-1.00-----1.00-1.00---------1.00----------------1.00----
...............................................................................................................................TCAGTCTCAGTCCCTCCCG........................................................................................................194.000.002.00--------1.00-----------1.00------------------------
....................................................................GGGGGCGGGGAGTGGTC.....................................................................................................................................................................173.000.00-2.00----------------------------1.00---------------
...................................................................TGGGGGCGGGGAGTGGTT.....................................................................................................................................................................1803.003.00---1.00---1.00----------------------------------1.00---
...................................................................TGGGGGCGGGGAGTGG.......................................................................................................................................................................1603.003.00-----------2.00--------------------------1.00-------
....................................................................GGGGGCGGGGAGTGGACGGG..................................................................................................................................................................202.000.00-----------------------------1.00---------1.00------
...................................................................TGGGGGCGGGGAGTGGCTCT...................................................................................................................................................................2001.003.00-------------------------------------------1.00--
.....................................................................................................................................................................AGGAAGATGAGGAGAGTAGTAT...............................................................221.000.00--------------------------------------------1.00-
...............................................................................................................................TCAGTCTCAGTCCCTTCCCTA......................................................................................................211.000.001.00---------------------------------------------
....................................................................GGGGGCGGGGAGTGGTTG....................................................................................................................................................................181.000.00-------------------------------1.00--------------
...................................................................TGGGGGCGGGGAGTGGTCG....................................................................................................................................................................1901.003.00-----------------------1.00----------------------
...............................................................................................................................TCAGTCTCAGTCCCTTCTCT.......................................................................................................201.000.00--1.00-------------------------------------------
...............................................................................................................................TCAGTCTCAGTCCCTCCCT........................................................................................................191.000.00---------1.00------------------------------------
....................................................................GGGGGCGGGGAGTGGTT.....................................................................................................................................................................171.000.00-------------------1.00--------------------------
.....................................................................................................................................................................AGGAAGATGAGGAGATATT..................................................................191.000.00--------------------------1.00-------------------
.................................................................CTTGGGGGCGGGGAGCGG.......................................................................................................................................................................181.000.00---1.00------------------------------------------
...................................................................TGGGGGCGGGGAGTGGCTGT...................................................................................................................................................................2001.003.00---------------------------------1.00------------
...............................................................................................................................TCAGTCTCAGTCCCTTCCAA.......................................................................................................201.000.00--1.00-------------------------------------------
...................................................................TGGGGGCGGGGAGTGGTCGG...................................................................................................................................................................2001.003.00-----------------------------------1.00----------
...............................................................................................................................TCAGTCTCAGTCCCTTCCTG.......................................................................................................201.000.001.00---------------------------------------------
...............................................................................................................................TCAGTCTCAGTCCCTTCTCG.......................................................................................................201.000.001.00---------------------------------------------
...............................................................................................................................................................CTCCAAAGGAAGATGAGATTG......................................................................211.000.00----------------------------------1.00-----------
...................................................................TGGGGGCGGGGAGTGAATG....................................................................................................................................................................191.000.001.00---------------------------------------------
....................................................................................................................................................................................................................TGCCATCTGCCTTGCTCGC...................191.000.00---1.00------------------------------------------
...............................................................................................................................TCAGTCTCAGTCCCTTCATAG......................................................................................................211.000.00--1.00-------------------------------------------
......................................................................................................................................................................GGAAGATGAGGAGAGATAA.................................................................191.000.00----------------------------------------1.00-----
...................................................................................................................................................................................................................CTGCCATCTGCCTTGCTCGT...................201.000.00---1.00------------------------------------------
...................................................................................................................................................................................................................CTGCCATCTGCCTTGCAAGC...................201.000.00-------1.00--------------------------------------
...................................................................TGGGGGCGGGGAGTGGACAGGC.................................................................................................................................................................221.000.00----------1.00-----------------------------------
...............................................................................................................................TCAGTCTCAGTCCCTTCACG.......................................................................................................201.000.001.00---------------------------------------------
..............................................................................................................................................................................................TGGAAAACCAGGGATTTTG.........................................191.000.00-----------------1.00----------------------------
...............................................................................................................................TCAGTCTCAGTCCCTT...........................................................................................................1650.200.200.20---------------------------------------------
...............................................................................................................................TCAGTCTCAGTCCCTTTCCG.......................................................................................................2050.200.200.20---------------------------------------------
...................................................................TGGGGGCGGGGAGTGGATGG...................................................................................................................................................................2060.170.170.17---------------------------------------------
...................................................................TGGGGGCGGGGAGTGGA......................................................................................................................................................................1760.170.17---------------------------------------------0.17

Antisense strand
TGCCCTTCGCTTTCCCAGACTGCAGCCCACCCCAGGACTCCAACGAGTTGGTAGGTGCCGTCAGGCTTGGGGGCGGGGAGTGGACATGATCATGATCGTGTTGGGCAGATACAAGGCAAGCCCTACCTCAGTCTCAGTCCCTTCACCTCCTCCCAGAGGCTCCAAAGGAAGATGAGGAGAGTATTACCAGTGGAAAACCAGGGATCATCTCCTGCCATCTGCCTTGCTCCTGATACACCTGCACAGAGCT
..............................................................(((...((((((.((((.((.(((((((....))))))).((((.............)))).....)).)))).))))))...)))......................................................................................................
..............................................................63......................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189784SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040041(GSM532926)
G612T. (cervix)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040023(GSM532908)
G575T. (cervix)
SRR189785SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR040019(GSM532904)
G701T. (cervix)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................CTCCAACGAGTTGGTAACT.................................................................................................................................................................................................. 192.000.00----------------------------1.00--------1.00--------