ID: uc010yya.1_intron_1_0_chr2_114379739_r.3p
GENE: (2)
chr2:114379689-114379938-


(9)
BRAIN 		(8)
BREAST 		(14)
CELL-LINE 		(7)
CERVIX 		(2)
HELA 		(2)
OTHER 		(4)
UTERUS

Sense strand
AACACAGGTAGCTCTAATATAGCTGTGACCCAGATGCTTCTGTTTCTAGCACGTATTTATTTTGCAGCAAACATTTACATCCATGATGTTTTACTGTTTTTTGAAAATAATTAGGCAATATCTCATCTGAGGTAGGATGTTTCTAGGGGTTGTGTTCTGAGGGAGGAAAACTAATCTGTTCTCTTTCCACTGCATTCTAGGAACAGTAAGAGGACCTTGTGCATGAATAATTTGTTTCCACACTACAGAG
..................................................................((........((((((....(((((...(((((.....)))))...))))).((((((....))))))))))))........))....................................................................................................
................................................................65...................................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029131(GSM416760)
MCF7. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR189786SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577742(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532890(GSM532890)
G576T. (cervix)		SRR029127(GSM416756)
A549. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		GSM532882(GSM532882)
G696T. (cervix)		SRR038857(GSM458540)
D20. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189784
...............................................................................................................................TGAGGTAGGATGTTTAGTT........................................................................................................1932.000.00-3.004.006.005.005.00--------1.001.001.00-1.00--------1.00-1.00----------1.001.001.00--------
...............................................................................................................................TGAGGTAGGATGTTTTAT.........................................................................................................1818.000.0012.00---------------------1.001.00-----------1.00-------1.00-1.00---1.00-
...............................................................................................................................TGAGGTAGGATGTTTTGTT........................................................................................................195.000.00--1.002.001.00--------------1.00-------------------------------
...............................................................................................................................TGAGGTAGGATGTTTTATA........................................................................................................195.000.001.00----1.00-------1.00----------1.00-------1.00------------------
...............................................................................................................................TGAGGTAGGATGTTTGGTT........................................................................................................195.000.00--2.00------1.00----1.00----------------------1.00-------------
...............................................................................................................................TGAGGTAGGATGTTTAAT.........................................................................................................184.000.001.00----1.00----------------------------1.00----1.00-----------
...............................................................................................................................TGAGGTAGGATGTTTAATT........................................................................................................194.000.00---1.00----1.00-------1.00---------1.00------------------------
...............................................................................................................................TGAGGTAGGATGTTTAGT.........................................................................................................184.000.00-2.001.00---------1.00--------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTGGT.........................................................................................................183.000.00---------1.001.00----------------------1.00-----------------
...............................................................................................................................TGAGGTAGGATGTTTGATT........................................................................................................193.000.00--1.00-----1.00--------1.00---------------------------------
...............................................................................................................................TGAGGTAGGATGTTTAG..........................................................................................................173.000.00-2.00-----1.00-------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTTA..........................................................................................................173.000.00-------1.00---------1.00----------------------------1.00----
...............................................................................................................................TGAGGTAGGATGTTTAGTG........................................................................................................193.000.00----1.00------1.00-1.00-------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTAGTA........................................................................................................192.000.00-1.00-----1.00-------------------------------------------
.....................................................................AACATTTACATCCATGATGTTTA..............................................................................................................................................................231.000.00---------------------1.00-----------------------------
...............................................................................................................................TGAGGTAGGATGTTTCATAA.......................................................................................................201.000.00--------------------1.00------------------------------
...............................................................................................................................TGAGGTAGGATGTTTTGTG........................................................................................................191.000.00-1.00-------------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTTCT.........................................................................................................181.000.00------------1.00--------------------------------------
................................................................................................................................................................................................................AGAGGACCTTGTGCATGAACAA....................221.000.00------1.00--------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTGGTA........................................................................................................191.000.00-1.00-------------------------------------------------
...............................................AGCACGTATTTATTTGCG.........................................................................................................................................................................................181.000.00------------------------------1.00--------------------
...............................................................................................................................TGAGGTAGGATGTTTGGTC........................................................................................................191.000.00-------------------------1.00-------------------------
...............................................................................................................................TGAGGTAGGATGTTTATTT........................................................................................................191.000.00---------------1.00-----------------------------------
...............................................................................................................................TGAGGTAGGATGTTTACTT........................................................................................................191.000.00----1.00----------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTGTGG........................................................................................................191.000.00----------------------------1.00----------------------
..................ATAGCTGTGACCCAGATGCTTCTGTTCCT...........................................................................................................................................................................................................291.000.00------------------------------------1.00--------------
............................................................................................................................ATCTGAGGTAGGATGTTTCTAGGGGTTGCG................................................................................................301.000.00------1.00--------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTGAA.........................................................................................................181.000.00----------1.00----------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTTGT.........................................................................................................181.000.00--1.00------------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTGG..........................................................................................................171.000.00-------1.00-------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTAGCT........................................................................................................191.000.00--1.00------------------------------------------------
........................................................................................................................................................................................................GAACAGTAAGAGGACCTTGTGCACGA........................261.000.00------1.00--------------------------------------------
.........................................................................................................................................................................................................AACAGTAAGAGGACCTTGTGCACG.........................241.000.00------1.00--------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTGGTG........................................................................................................191.000.00-1.00-------------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTCTT.........................................................................................................181.000.00------------------1.00--------------------------------
...............................................................................................................................TGAGGTAGGATGTTTGACT........................................................................................................191.000.00--1.00------------------------------------------------
......................................................................................................................................................................................................AGGAACAGTAAGAGGACCTTGTGCACGAA.......................291.000.00------1.00--------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTTACT........................................................................................................191.000.00--------1.00------------------------------------------
...............................................................................................................................TGAGGTAGGATGTTTAATA........................................................................................................191.000.00-1.00-------------------------------------------------
.........................................................................................................................................................................................................AACAGTAAGAGGACCTG................................171.000.00-------------------------------1.00-------------------
...............................................................................................................................TGAGGTAGGATGTTTCG..........................................................................................................171.000.00-----------1.00---------------------------------------
......................................................................................TGTTTTACTGTTTTTTG...................................................................................................................................................1780.120.12--------------------------------------------------0.12
......................................................................................TGTTTTACTGTTTTTTGTG.................................................................................................................................................1980.120.12-------0.12-------------------------------------------

Antisense strand
AACACAGGTAGCTCTAATATAGCTGTGACCCAGATGCTTCTGTTTCTAGCACGTATTTATTTTGCAGCAAACATTTACATCCATGATGTTTTACTGTTTTTTGAAAATAATTAGGCAATATCTCATCTGAGGTAGGATGTTTCTAGGGGTTGTGTTCTGAGGGAGGAAAACTAATCTGTTCTCTTTCCACTGCATTCTAGGAACAGTAAGAGGACCTTGTGCATGAATAATTTGTTTCCACACTACAGAG
..................................................................((........((((((....(((((...(((((.....)))))...))))).((((((....))))))))))))........))....................................................................................................
................................................................65...................................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029131(GSM416760)
MCF7. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR189786SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577742(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532890(GSM532890)
G576T. (cervix)		SRR029127(GSM416756)
A549. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		GSM532882(GSM532882)
G696T. (cervix)		SRR038857(GSM458540)
D20. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189784
...........................................................................................TACTGTTTTTTGAAACCA............................................................................................................................................. 182.000.00--------------------------------------1.00--------1.00---
..................................................................................................................................................................................................................AGGACCTTGTGCATGGGGT..................... 191.000.00------------------------------------------------1.00--
................................................................................................................................................................................TGTTCTCTTTCCACTGAAC....................................................... 191.000.00--------------------------------------------1.00------