ID: uc010ysa.1_intron_8_0_chr2_74867455_r.5p
GENE: (1)
chr2:74875192-74875441-


(3)
B-CELL
(1)
BRAIN
(6)
BREAST
(9)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
LIVER
(1)
OTHER
(27)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCTGAGAGCCGGGAGGACCAGGTGAGGGGGCCTCCGTCTTCCGAAGACAGGTACGGTTCTCCACGCCTCGGGGAGGGAGGGCAGCCCGAGAGCAGCCGGCACCACTTCGCAGGCTGGGCTGGGCGTGGGCCGAGCTCGGGCCAGTCCTCAGGCAGGTGTTGGTTGCGCTGGCCGTGGCGGGTGCCGGCGCAAGACTGACGCCGAGAGAGGCTCCGAAATCGCTGTCGGAGTCATCCCTCCGCATACTGTT
................................................................((((.(((((.........((((.((..(((((.((........)).)))))..)))))).(((.(((....))).))).))))))))).(((((..(((((((((((..........)))))))))..))..)))))................................................
...............................................................64.............................................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................CGGGGAGGGAGGGCAGCGGCA.................................................................................................................................................................216.000.00------2.00-1.001.00---------------1.00---------1.00--------------------
.......................................................................................................................................................................................CCGGCGCAAGACTGAC...................................................1615.005.00--1.002.002.00---------------------------------------------------
........................................................................................................................................................................................CGGCGCAAGACTGACCAGA...............................................1915.003.001.00------1.00-1.00----1.00-----------------1.00-----------------------
.......................................................................................................................................................................................CCGGCGCAAGACTGACCAGA...............................................2015.005.00------------1.00----------1.00--1.00-------1.00--1.00------------------
...............................................................................................................................................................................GGCGGGTGCCGGCGCGC..........................................................1753.200.60--0.20--------0.200.20-------------------------0.800.200.200.200.40-0.200.200.20---0.20-----
.......................................................................................................................................................................................CCGGCGCAAGACTGACC..................................................1713.005.00----------1.001.00-------------------1.00------------------------
........................................................................................................................................................................................CGGCGCAAGACTGAC...................................................1513.003.00-------------1.00-----1.00-------1.00----------------------------
........................................................................................................................................................................................CGGCGCAAGACTGACCA.................................................1712.003.002.00-------------------------------------------------------
.......................................................................................................................................................................................CCGGCGCAAGACTGACCAG................................................1912.005.00--------1.00---------------------1.00-------------------------
...............................................................................................................................................................................GGCGGGTGCCGGCGCGCC.........................................................1851.400.60--0.20------------------------------------0.200.20-------0.20--0.200.20-0.20-
..............................................................................................................AGGCTGGGCTGGGCGAGA..........................................................................................................................181.000.00----------------------------1.00---------------------------
........................................................................................................................................................................................CGGCGCAAGACTGACCAG................................................1811.003.001.00-------------------------------------------------------
..............................................................................................................................GGGCCGAGCTCGGGCGACC.........................................................................................................191.000.00------------------------------------1.00-------------------
........................................................................................................................................................................................CGGCGCAAGACTGACC..................................................1611.003.00---------------1.00----------------------------------------
............................................................................................................GCAGGCTGGGCTGGGCGTGG..........................................................................................................................2011.001.00----------------------1.00---------------------------------
.......................................................................................................................................................................................CCGGCGCAAGACTGACCA.................................................1811.005.00--1.00-----------------------------------------------------
.......................................................................................................................................................................................CCGGCGCAAGACTGACCATA...............................................2011.005.00-1.00------------------------------------------------------
......................................................................................................................................................................................................CGCCGAGAGAGGCTCCTAC.................................191.000.00---------------------------------1.00----------------------
..............................................................................................................................................................................TGGCGGGTGCCGGCGCGC..........................................................181.000.00-1.00------------------------------------------------------
....................................................................CGGGGAGGGAGGGCAGGCAG..................................................................................................................................................................201.000.00------------------1.00-------------------------------------
........................................................................................................................................................................................CGGCGCAAGACTGACCAAA...............................................1911.003.00-------1.00------------------------------------------------
....................................................................CGGGGAGGGAGGGCAGCC....................................................................................................................................................................1811.001.00-----------------------------1.00--------------------------
...................................................................TCGGGGAGGGAGGGCCAAG....................................................................................................................................................................191.000.00-----1.00--------------------------------------------------
..............................................................................................................................................................................TGGCGGGTGCCGGCGCGT..........................................................181.000.00-1.00------------------------------------------------------
..............................................................................................................................................................................TGGCGGGTGCCGGCGCG...........................................................171.000.00-1.00------------------------------------------------------
.......................................................................................................................................................................................CCGGCGCAAGACTGA....................................................1511.001.00---------------------1.00----------------------------------
........................................................................................................................................................................................CGGCGCAAGACTGACCATC...............................................1911.003.001.00-------------------------------------------------------
..............................................................................................................AGGCTGGGCTGGGCGAGAA.........................................................................................................................191.000.00-----------------1.00--------------------------------------
..............................................................................................................AGGCTGGGCTGGGCGTGGGGGC......................................................................................................................221.000.00-----1.00--------------------------------------------------
...............................................................................................................................................................................GGCGGGTGCCGGCGCGCCC........................................................1950.600.60--0.20-------0.20------------------------------------0.20--------
...............................................................................................................................................................................GGCGGGTGCCGGCGC............................................................1550.600.60-----------------------------------------0.20-------0.20---0.20--
..................................................................CTCGGGGAGGGAGGGCAG......................................................................................................................................................................1830.330.33-------------------------------------------0.33------------
..........................................................................................AGCAGCCGGCACCAC.................................................................................................................................................1570.140.14-------------------------------------------------------0.14

Antisense strand
GCTGAGAGCCGGGAGGACCAGGTGAGGGGGCCTCCGTCTTCCGAAGACAGGTACGGTTCTCCACGCCTCGGGGAGGGAGGGCAGCCCGAGAGCAGCCGGCACCACTTCGCAGGCTGGGCTGGGCGTGGGCCGAGCTCGGGCCAGTCCTCAGGCAGGTGTTGGTTGCGCTGGCCGTGGCGGGTGCCGGCGCAAGACTGACGCCGAGAGAGGCTCCGAAATCGCTGTCGGAGTCATCCCTCCGCATACTGTT
................................................................((((.(((((.........((((.((..(((((.((........)).)))))..)))))).(((.(((....))).))).))))))))).(((((..(((((((((((..........)))))))))..))..)))))................................................
...............................................................64.............................................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................AGCAGCCGGCACCACTT............................................................................................................................................... 1771.000.00--------------------1.00-----------------------------------
.........................GGGGGCCTCCGTCTTGG................................................................................................................................................................................................................ 171.000.00-1.00------------------------------------------------------
............GAGGACCAGGTGAGGGGACAG......................................................................................................................................................................................................................... 211.000.00------------------------1.00-------------------------------
...................................................................................................................................................................................................................................GAGTCATCCCTCCGCAGCC.... 191.000.00----------------1.00---------------------------------------