ID: uc010yoq.1_intron_27_0_chr2_54141069_r.3p
GENE: PSME4(19)
chr2:54141019-54141268-


(9)
B-CELL
(2)
BREAST
(20)
CELL-LINE
(1)
CERVIX
(2)
HEART
(5)
HELA
(2)
LIVER
(1)
OTHER
(1)
RRP40.ip
(9)
SKIN
(1)
XRN.ip

Sense strand
TTTTGTGTCCCCTTTCCTCTGATAGATTTATTACGTCATTTTTAGTTAAATCATCCTTAGGATCTCAGCTTTTACTAACTTTTCGCTCAAAGAAATTCATACTTAAGGTCTAATAGTGAGACCATTTCATTGATATGTGAAAGGATGTGTTGCTTATGCAATGAGGGGCAGGGCTAGCTAACCTCTCTTGGCACCTCCAGGAAACTACCCAGCTCTGCTGGGGGAGCTGCACACAGAAAAGGAAACAGTT
....................................................((((...))))...(((...(((...((((((((((((.(((((..........(((((.......)))))))))).))))...))))))))..)))..)))................................................................................................
..................................................51.........................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189787SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR038859(GSM458542)
MM386. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.....................................................TCCTTAGGATCTCAGCTTGGC................................................................................................................................................................................21222.504.0012.506.00------0.500.50--------0.50-------------------0.500.50--0.500.50-0.50--------
.....................................................TCCTTAGGATCTCAGCTTGG.................................................................................................................................................................................20217.004.005.003.003.00---2.50---1.50---------1.00-------------------------0.500.50------
.....................................................TCCTTAGGATCTCAGC.....................................................................................................................................................................................16615.3315.3311.004.00------------------------------------0.17---------0.17-----
........................................................TTAGGATCTCAGCTTGGCA...............................................................................................................................................................................197.000.00-----1.00-----1.00-1.00----------1.00--1.00--1.00-1.00---------------------
.....................................................TCCTTAGGATCTCAGCT....................................................................................................................................................................................1756.806.804.002.60----------------------------------------------0.20-----
.....................................................TCCTTAGGATCTCAGCTTG..................................................................................................................................................................................1925.004.002.001.00------------0.50---------------------1.00----0.50------------
.....................................................TCCTTAGGATCTCAGCTTGGCA...............................................................................................................................................................................2224.504.00-----0.50--------0.50-------1.00------1.00-------0.50--0.50---0.50---------
.....................................................TCCTTAGGATCTCAGCTT...................................................................................................................................................................................1824.004.003.001.00----------------------------------------------------
.............................................................................................................................................................................CTAGCTAACCTCTCTTGGCACCTCCAG..................................................2713.003.00----3.00-------------------------------------------------
......................................................CCTTAGGATCTCAGC.....................................................................................................................................................................................1581.881.881.120.75----------------------------------------------------
......................................................CCTTAGGATCTCAGCT....................................................................................................................................................................................1661.331.330.830.33-------------------------------------0.17--------------
...........................................................................................................................................AAAGGATGTGTTGCTAAT.............................................................................................181.000.00-------------------1.00----------------------------------
........................................................................................................................ACCATTTCATTGATATGGTC..............................................................................................................201.000.00-----------------------1.00------------------------------
.......................................................CTTAGGATCTCAGCTTTGCAG..............................................................................................................................................................................211.000.00---------1.00--------------------------------------------
.................................................................................................................................................................TGAGGGGCAGGGCTAGCAGC.....................................................................201.000.00-------1.00----------------------------------------------
..........CCTTTCCTCTGATAGATTTATTACGTCATT..................................................................................................................................................................................................................3011.001.00---------------------------------1.00--------------------
.....................................................................................................................................TATGTGAAAGGATGTGTTGCTTATGCAATG.......................................................................................3011.001.00--------------------------1.00---------------------------
.................................................................................................................................................................TGAGGGGCAGGGCTACCAG......................................................................191.000.00----------------1.00-------------------------------------
.............................................................................................................................................................................................GGCACCTCCAGGAAACTACCC........................................2111.001.00---------------------1.00--------------------------------
.......................................................CTTAGGATCTCAGCTTGGCA...............................................................................................................................................................................2041.000.25-------------0.250.25----------------------0.25-------------0.25--
......................................................CCTTAGGATCTCAGCTTGGCA...............................................................................................................................................................................2130.670.67-----------0.330.33-----------------------------------------
......................................................CCTTAGGATCTCAGCTT...................................................................................................................................................................................1730.670.67-0.67----------------------------------------------------
....................................................ATCCTTAGGATCTCAGC.....................................................................................................................................................................................1720.500.500.50-----------------------------------------------------
.....................................................TCCTTAGGATCTCAGCTTGTC................................................................................................................................................................................2120.504.00------------------0.50-----------------------------------
......................................................CCTTAGGATCTCAGCTTGGAA...............................................................................................................................................................................2130.330.67-------------------------------------------------0.33----
......................................................CCTTAGGATCTCAGCTTGAA................................................................................................................................................................................2030.330.67--------------------------------------------------0.33---
.......................................................CTTAGGATCTCAGCTT...................................................................................................................................................................................1640.250.25-0.25----------------------------------------------------
.......................................................CTTAGGATCTCAGCTTCGCA...............................................................................................................................................................................2040.250.25----------------------------------------------------0.25-

Antisense strand
TTTTGTGTCCCCTTTCCTCTGATAGATTTATTACGTCATTTTTAGTTAAATCATCCTTAGGATCTCAGCTTTTACTAACTTTTCGCTCAAAGAAATTCATACTTAAGGTCTAATAGTGAGACCATTTCATTGATATGTGAAAGGATGTGTTGCTTATGCAATGAGGGGCAGGGCTAGCTAACCTCTCTTGGCACCTCCAGGAAACTACCCAGCTCTGCTGGGGGAGCTGCACACAGAAAAGGAAACAGTT
....................................................((((...))))...(((...(((...((((((((((((.(((((..........(((((.......)))))))))).))))...))))))))..)))..)))................................................................................................
..................................................51.........................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189787SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR038859(GSM458542)
MM386. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.....................................................TCCTTAGGATCTCAGCTTCC................................................................................................................................................................................. 2024.000.00---4.00--------------------------------------------------
.....................................................TCCTTAGGATCTCAGCTTCCT................................................................................................................................................................................ 2123.000.00--1.00----------------------1.00--1.00-------------------------
.....................................................TCCTTAGGATCTCAGCTTC.................................................................................................................................................................................. 1922.000.00------------1.00----------------------1.00------------------
.....................................................TCCTTAGGATCTCAGCTTCA................................................................................................................................................................................. 2022.000.00-----1.00----------------------------1.00-------------------
.....................................................TCCTTAGGATCTCAGCC.................................................................................................................................................................................... 1762.000.002.00-----------------------------------------------------
.....................................................TCCTTAGGATCTCAGCCCT.................................................................................................................................................................................. 1961.000.00---------------1.00--------------------------------------
.....................................................TCCTTAGGATCTCAGCCC................................................................................................................................................................................... 1861.000.00--------1.00---------------------------------------------
....................................................................................................................................................................................................CCAGGAAACTACCCATGGG................................... 191.000.00-------1.00----------------------------------------------
....................................................................................................................................................................................................CCAGGAAACTACCCAGA..................................... 171.000.00-------------------------------1.00----------------------
..TTGTGTCCCCTTTCCTGGCT.................................................................................................................................................................................................................................... 201.000.00-----------------1.00------------------------------------
...............................................................................................................................................................................................TAGTTTCCTGGAGGTG........................................... 1650.200.20-----------------------------------------------------0.20