ID: uc010ynq.1_intron_5_0_chr2_39162976_f.3p
GENE: (6)
chr2:39164276-39164525+


(1)
AGO2.ip
(4)
BREAST
(12)
CELL-LINE
(3)
CERVIX
(2)
LIVER
(2)
OTHER
(18)
SKIN
(1)
XRN.ip

Sense strand
CAGGTGCCCGCCACCACGCCCAGCTAATTTTTTATATTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACTTCGTGATCCGCCTGCCTCGGCCTCCGAAAGTGGTAACAAACATATTTTTTAAAAAGATTTTGATAGCAGTTTTCTTTGTTTCCCCGCCCCTCCCCCCACCCCACCAGGAGTGAACCCAACAACTCCAGAAGCAGAAGAAAACCTCAAGTCTTGCCTC
............................................................................................((((.((...(((......))).)))))).((((...................(((((..(((....)))...)))))..................))))..........................................................
........................................................................................89.............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577738(Rovira)
total RNA. (breast)
..............................................................................................................................................................................CCCCGCCCCTCCCCCCACGC........................................................2015.000.00--11.00--------1.00---1.001.00------------------1.00---------
..............................................................................................................................................................................CCCCGCCCCTCCCCCCACGCC.......................................................218.000.00-------------1.00------1.00--1.00----1.00-1.001.00-----1.00--1.00----
..............................................................................................................................................................................CCCCGCCCCTCCCCCCACG.........................................................194.000.00--4.00------------------------------------------
.......................................TTAGTAGAGACAGGGTTTAAG..............................................................................................................................................................................................213.000.00---3.00-----------------------------------------
......................................TTTAGTAGAGACAGGGTTTAGA..............................................................................................................................................................................................223.000.00---3.00-----------------------------------------
.........................................AGTAGAGACAGGGTTTAGAA.............................................................................................................................................................................................203.000.00---3.00-----------------------------------------
..............................................................................................................................................................................CCCCGCCCCTCCCCCCACTC........................................................202.000.00--2.00------------------------------------------
.............................................................................................TCGTGATCCGCCTGCCTCGGAAGA.....................................................................................................................................242.000.00----------2.00----------------------------------
..................................................................AGCCAGGATGGTCTCAATCCTTG.................................................................................................................................................................232.000.00-2.00-------------------------------------------
.....................................................................CAGGATGGTCTCAATCACAG.................................................................................................................................................................202.000.00--------2.00------------------------------------
....................................TTTTTAGTAGAGACAGGGTTTAACC.............................................................................................................................................................................................252.000.00---------2.00-----------------------------------
..........................................GTAGAGACAGGGTTTCACCATGTTAGC.....................................................................................................................................................................................2701.001.00------1.00--------------------------------------
.................................................................TAGCCAGGATGGTCTCAACCCC...................................................................................................................................................................221.000.00-1.00-------------------------------------------
.AGGTGCCCGCCACCACGCCGACC..................................................................................................................................................................................................................................231.000.00-1.00-------------------------------------------
.AGGTGCCCGCCACCACGCCGCC...................................................................................................................................................................................................................................221.000.00-1.00-------------------------------------------
.AGGTGCCCGCCACCACGCCGGCC..................................................................................................................................................................................................................................231.000.00-1.00-------------------------------------------
........................................TAGTAGAGACAGGGTAGA................................................................................................................................................................................................181.000.00----------------------------------1.00----------
...GTGCCCGCCACCACGCCCAGCTAACTTC...........................................................................................................................................................................................................................281.000.00-----1.00---------------------------------------
..............................................................TGTTAGCCAGGATGGTCTCAACCCC...................................................................................................................................................................251.000.00-1.00-------------------------------------------
............................................................CATGTTAGCCAGGATGGTCTCAATCTCCT.................................................................................................................................................................2901.001.00------------------------------------1.00--------
........CGCCACCACGCCCAGCTAATGTGC..........................................................................................................................................................................................................................241.000.00-----1.00---------------------------------------
..................................................................AGCCAGGATGGTCTCAATCTCCGACA..............................................................................................................................................................261.000.001.00--------------------------------------------
................................................................TTAGCCAGGATGGTCTCACCTG....................................................................................................................................................................221.000.001.00--------------------------------------------
..............................................................................................................................................................................CCCCGCCCCTCCCCCCACGCA.......................................................211.000.00-----------------1.00---------------------------
................................................................................................................................................................................................CCCACCAGGAGTGAATTTG.......................................191.000.00----1.00----------------------------------------
............................................................CATGTTAGCCAGGATGGTCTCAAGCTA...................................................................................................................................................................271.000.00-------------------------1.00-------------------
.............................................................................................TCGTGATCCGCCTGCCTCGGCCCTGC...................................................................................................................................261.000.001.00--------------------------------------------
..........................................................ACCATGTTAGCCAGGATGA.............................................................................................................................................................................191.000.00-----------------------------1.00---------------
................................................................................................TGATCCGCCTGCCTCGGCCTCCAGGG................................................................................................................................261.000.00-1.00-------------------------------------------
......CCCGCCACCACGCCCAGCTAATTTCTCT........................................................................................................................................................................................................................281.000.00-----1.00---------------------------------------
................................................................TTAGCCAGGATGGTCTCAATCCTTG.................................................................................................................................................................251.000.00-----1.00---------------------------------------
.............................................................ATGTTAGCCAGGATGGGCC..........................................................................................................................................................................191.000.001.00--------------------------------------------
.........................................................................ATGGTCTCAATCTCCTGACTTCG..........................................................................................................................................................2301.001.00------1.00--------------------------------------
............................................................................................................................................TTTAAAAAGATTTTGTGTT...........................................................................................191.000.00-------1.00-------------------------------------
...............................................................................................................................................................................CCCGCCCCTCCCCCCACGCCT......................................................211.000.00---------------------------1.00-----------------
.........................................................................................................................................................................................................................CCAGAAGCAGAAGAAGA................171.000.00------------------1.00--------------------------
.................................................................................................................................................................................................CCACCAGGAGTGAACCTG.......................................181.000.00--------------------------1.00------------------
..........................................................ACCATGTTAGCCAGGATGCGTC..........................................................................................................................................................................221.000.001.00--------------------------------------------
...........................................................................GGTCTCAATCTCCTGACTTCGTGATC.....................................................................................................................................................2601.001.00---------------------1.00-----------------------
........CGCCACCACGCCCAGCTAATTTTCGC........................................................................................................................................................................................................................261.000.001.00--------------------------------------------
..........................................................................................ACTTCGTGATCCGCCTGGCT............................................................................................................................................201.000.00-1.00-------------------------------------------
..................................................................................................ATCCGCCTGCCTCGGCCTCCGGGA................................................................................................................................241.000.001.00--------------------------------------------
................................................................TTAGCCAGGATGGTCTCAATCTCCGACA..............................................................................................................................................................281.000.001.00--------------------------------------------
.........................................................................ATGGTCTCAATCTCCTGACTTCGTGAT......................................................................................................................................................2701.001.00------1.00--------------------------------------
.................................................................TAGCCAGGATGGTCTCAACCTA...................................................................................................................................................................221.000.00------------1.00--------------------------------
......CCCGCCACCACGCCCAGCTCCAC.............................................................................................................................................................................................................................231.000.00--------------------------------1.00------------
............................................................................................................................................................................TTCCCCGCCCCTCCCCCC............................................................1830.330.33-------------------------------------------0.33-
.............................................................................................................................................................................TCCCCGCCCCTCCCCCCA...........................................................1840.250.25--------------------------------------------0.25

Antisense strand
CAGGTGCCCGCCACCACGCCCAGCTAATTTTTTATATTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACTTCGTGATCCGCCTGCCTCGGCCTCCGAAAGTGGTAACAAACATATTTTTTAAAAAGATTTTGATAGCAGTTTTCTTTGTTTCCCCGCCCCTCCCCCCACCCCACCAGGAGTGAACCCAACAACTCCAGAAGCAGAAGAAAACCTCAAGTCTTGCCTC
............................................................................................((((.((...(((......))).)))))).((((...................(((((..(((....)))...)))))..................))))..........................................................
........................................................................................89.............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577738(Rovira)
total RNA. (breast)
......CCCGCCACCACGCCCAGCTAATGGGC.......................................................................................................................................................................................................................... 263.000.003.00--------------------------------------------
..GGTGCCCGCCACCACGCCCAGCTGT............................................................................................................................................................................................................................... 252.000.00-2.00-------------------------------------------
..GGTGCCCGCCACCACGCCCAGCTACGC............................................................................................................................................................................................................................. 272.000.002.00--------------------------------------------
..GGTGCCCGCCACCACGCCCAGCTCGC.............................................................................................................................................................................................................................. 262.000.00-2.00-------------------------------------------
......CCCGCCACCACGCCCAGCTGGGC............................................................................................................................................................................................................................. 232.000.002.00--------------------------------------------
......CCCGCCACCACGCCCAGCTAATGAAC.......................................................................................................................................................................................................................... 262.000.002.00--------------------------------------------
......CCCGCCACCACGCCCAGCTAATGCCC.......................................................................................................................................................................................................................... 262.000.001.001.00-------------------------------------------
..............................TTTATATTTTTAGTAGAGACTCT..................................................................................................................................................................................................... 232.000.00----2.00----------------------------------------
................................................................TTAGCCAGGATGGTCTCAATCTCCAATA.............................................................................................................................................................. 281.000.00-------1.00-------------------------------------
....TGCCCGCCACCACGCCTTA................................................................................................................................................................................................................................... 191.000.00---------------------------------------1.00-----
....TGCCCGCCACCACGCCCAGCTGCGG............................................................................................................................................................................................................................. 251.000.00-1.00-------------------------------------------
......CCCGCCACCACGCCCAGCGA................................................................................................................................................................................................................................ 201.000.00--------------1.00------------------------------
...............................................................GTTAGCCAGGATGGTCTCAAGGCG................................................................................................................................................................... 241.000.00-1.00-------------------------------------------
.............................................................................................................................................................................................CACCCCACCAGGAGTTCGA.......................................... 191.000.00-----------------------------------------1.00---
..GGTGCCCGCCACCACGCCCAGCTAGT.............................................................................................................................................................................................................................. 261.000.00-1.00-------------------------------------------
..GGTGCCCGCCACCACGCCCAGCTCCTG............................................................................................................................................................................................................................. 271.000.001.00--------------------------------------------
.............................................GAGACAGGGTTTCACCATGTTAGCCAGGACGC............................................................................................................................................................................. 321.000.001.00--------------------------------------------
..GGTGCCCGCCACCACGCCCAGCCT................................................................................................................................................................................................................................ 241.000.001.00--------------------------------------------
..GGTGCCCGCCACCACGCCCAGCTCTAG............................................................................................................................................................................................................................. 271.000.00-1.00-------------------------------------------
.................................................................................................................................................................................CGCCCCTCCCCCCACTATT...................................................... 191.000.00--------------------------------------1.00------
.................................................CAGGGTTTCACCATGTTAGCCAGATT............................................................................................................................................................................... 261.000.00---1.00-----------------------------------------
..GGTGCCCGCCACCACGCCCAGCTAACGGA........................................................................................................................................................................................................................... 291.000.001.00--------------------------------------------
......CCCGCCACCACGCCCAGCTAATTGGG.......................................................................................................................................................................................................................... 261.000.00-------1.00-------------------------------------
......CCCGCCACCACGCCCAGCTAAGGG............................................................................................................................................................................................................................ 241.000.00-----------1.00---------------------------------
....TGCCCGCCACCACGCCCAGCTGCA.............................................................................................................................................................................................................................. 241.000.001.00--------------------------------------------
......CCCGCCACCACGCCCAGCTAATGGG........................................................................................................................................................................................................................... 251.000.001.00--------------------------------------------
......CCCGCCACCACGCCCAGGGCG............................................................................................................................................................................................................................... 211.000.001.00--------------------------------------------
............................................................CATGTTAGCCAGGATGGTCTCGA....................................................................................................................................................................... 231.000.00-1.00-------------------------------------------
.......................................................................GGATGGTCTCAATCTCCTGACTGGC.......................................................................................................................................................... 251.000.00-1.00-------------------------------------------
....TGCCCGCCACCACGCCCAGCTAATTACCG......................................................................................................................................................................................................................... 291.000.00-1.00-------------------------------------------
...........................................................CCATGTTAGCCAGGAGGGG............................................................................................................................................................................ 191.000.00----------------------1.00----------------------
....................................................................................................................................................................TTCTTTGTTTCCCCGCCT.................................................................... 181.000.00------------------------------------------1.00--
...............................................GACAGGGTTTCACCATGTTAGCCACCAC............................................................................................................................................................................... 281.000.001.00--------------------------------------------
...........................................................................GGTCTCAATCTCCTGACGTC........................................................................................................................................................... 201.000.00------------------------1.00--------------------
....TGCCCGCCACCACGCCCAGCTAACGT............................................................................................................................................................................................................................ 261.000.001.00--------------------------------------------
......CCCGCCACCACGCCCAGCTAATTGGGC......................................................................................................................................................................................................................... 271.000.001.00--------------------------------------------
..............................................AGACAGGGTTTCACCATGTTAGCCAGGATCGC............................................................................................................................................................................ 321.000.001.00--------------------------------------------
......CCCGCCACCACGCCCAGCTAATTTTTGATC...................................................................................................................................................................................................................... 301.000.001.00--------------------------------------------
......CCCGCCACCACGCCCAGCTAATTGCCC......................................................................................................................................................................................................................... 271.000.001.00--------------------------------------------
.................................................CAGGGTTTCACCATGTTAGCCAATA................................................................................................................................................................................ 251.000.00---------------------------------1.00-----------
..GGTGCCCGCCACCACGCCCACGGG................................................................................................................................................................................................................................ 241.000.00-1.00-------------------------------------------
.AGGTGCCCGCCACCACTTTG..................................................................................................................................................................................................................................... 201.000.00-------------------1.00-------------------------
.......................................................................GGATGGTCTCAATCTCCTGTCC............................................................................................................................................................. 221.000.001.00--------------------------------------------
.AGGTGCCCGCCACCACGCCCAGCTTC............................................................................................................................................................................................................................... 261.000.001.00--------------------------------------------
.......CCGCCACCACGCCCAGCTAATTCCCG......................................................................................................................................................................................................................... 261.000.001.00--------------------------------------------
.............CCACGCCCAGCTAATTTTTGACA...................................................................................................................................................................................................................... 231.000.001.00--------------------------------------------
......CCCGCCACCACGCCCAGCTGGAG............................................................................................................................................................................................................................. 231.000.001.00--------------------------------------------
.....................................................................CAGGATGGTCTCAATCTCTAA................................................................................................................................................................ 211.000.00----1.00----------------------------------------