ID: uc010ynn.1_intron_0_0_chr2_38523256_r.3p
GENE: (12)
chr2:38523206-38523455-


(4)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(7)
CELL-LINE 		(2)
CERVIX 		(2)
LIVER 		(10)
OTHER 		(2)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GAATAAGAGGAAAGTAATTTTTGTTGCATTATAAAATGTCTAGTAGCATCATAAGTTTTTTTGAGAGAAGCATCTTTTTATTTCCCATATTCCTGGTTATTTTCATCATTGCTTTGAATTGAATTTTTATATCTATTTTTATATGTAACTCTTTTTTTACCTCATGTTTTTGTTTGTTTTGCACATTTCTCATACCACAGGTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTC
.............................................................................................................................................((((.............((..((......))...)).............))))........................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189785SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR343334SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR343336SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR189783GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
.................................................................................................................................................TAACTCTTTTTTTACCTCATG....................................................................................211161.00161.00128.0024.007.00--1.00----------------1.00---------
.................................................................................................................................................TAACTCTTTTTTTACCTCACG....................................................................................2152.000.002.0041.002.00-3.003.00------1.00-------------------
..................................................................................................................................................AACTCTTTTTTTACCTCATG....................................................................................20121.0021.0018.002.00--------------1.00---------------
.................................................................................................................................................................................TTTGCACATTTCTCATACCACAG..................................................23120.0020.003.0011.002.00-1.003.00--------------------------
............................................................................................................................................................................TTTGTTTTGCACATTTCTCATACCACAG..................................................28119.0019.00-18.001.00-----------------------------
..................................................................................................................................................................................TTGCACATTTCTCATACCACAG..................................................22118.0018.00-13.004.00--1.00--------------------------
......................................................................................................................................................................................ACATTTCTCATACCACAG..................................................18112.0012.00-6.00--4.00----1.00-------1.00--------------
.....................................................................................................................................................................................CACATTTCTCATACCACAG..................................................19111.0011.003.003.001.00-3.00----1.00----------------------
...................................................................................................................................................................................TGCACATTTCTCATACCACAG..................................................21111.0011.00-8.001.00------2.00----------------------
.........................................................................................................................AATTTTTATATCTATTTTTATATG.........................................................................................................2418.008.003.001.001.00-------3.00---------------------
.......................................................................................................................................................................................CATTTCTCATACCACAG..................................................1728.008.001.003.001.50-1.501.00--------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCAT.....................................................................................2018.008.007.001.00------------------------------
.............................................................................TTATTTCCCATATTCTAGC..........................................................................................................................................................196.000.00-----------3.00---2.00---------1.00------
.................................................................................................................................................TAACTCTTTTTTTACCTCTTG....................................................................................215.000.005.00-------------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCATGTTT.................................................................................2415.005.00---5.00----------------------------
....................................................................................................................................................................................GCACATTTCTCATACCACAG..................................................2015.005.002.002.001.00-----------------------------
................................................................................................................................................................................TTTTGCACATTTCTCATACCACAG..................................................2414.004.00-2.001.00-1.00---------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCATTTTT.................................................................................2414.008.00-4.00------------------------------
...................................................................................................................................................................ATGTTTTTGTTTGTTTTGCACATTCCT............................................................274.000.00-------4.00------------------------
........................................................................................................................................................................................ATTTCTCATACCACAG..................................................1693.113.110.331.000.11-0.780.44---0.11-------0.33--------------
.................................................................................................................................................TAACTCTTTTTTTACCTCATA....................................................................................2113.008.003.00-------------------------------
.......................................................................................................................................................................................CATTTCTCATACCACAGGTATTG............................................2313.003.00-2.00---1.00--------------------------
.............................................................................................................................................................................TTGTTTTGCACATTTCTCATACCACAG..................................................2713.003.00-3.00------------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTTATG....................................................................................213.000.002.001.00------------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCATGTTTTTG..............................................................................2713.003.001.001.001.00-----------------------------
..................................................................................................................................................AACTCTTTTTTTACCTCACG....................................................................................202.000.00-2.00------------------------------
...............................................................................................................................................................................GTTTTGCACATTTCTCATACCACAG..................................................2512.002.00-1.001.00-----------------------------
...................................................................................................................................................ACTCTTTTTTTACCTCATG....................................................................................1912.002.00--------2.00-----------------------
............................................................................................................................................................................TTTGTTTTGCACATTTCTCATACCACAGGTATT.............................................3312.002.00-2.00------------------------------
....................................................................................................................................................CTCTTTTTTTACCTCACTAC..................................................................................202.000.00-2.00------------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCCTG....................................................................................212.000.001.001.00------------------------------
..............................................................................................................................................................................TGTTTTGCACATTTCTCATACCACAG..................................................2612.002.00-2.00------------------------------
........................................................................................................................................................................................ATTTCTCATACCACAGGTATTG............................................2212.002.001.00-1.00-----------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCATT....................................................................................2112.008.002.00-------------------------------
..................................................................................TCCCATATTCCTGGTTTT......................................................................................................................................................182.000.00--------------2.00-----------------
.................................................................................................................................................TAACTCTTTTTTTACCTCGTG....................................................................................212.000.002.00-------------------------------
................................................................................................................................................................................TTTTGCACATTTCTCATACCACAGA.................................................2511.004.00-----1.00--------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCAGG....................................................................................211.000.001.00-------------------------------
......................................................................CATCTTTTTATTTCCCATATTCC.............................................................................................................................................................2311.001.00-1.00------------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCATGCT..................................................................................2311.00161.00-1.00------------------------------
............................................................................................................................................................................................................................TAATTTGATGGAGGAAAACAC.........211.000.00------------1.00-------------------
...............................................................................................................CTTTGAATTGAATTTTTATATCTA...................................................................................................................2411.001.00---1.00----------------------------
..............................ATAAAATGTCTAGTAGCATC........................................................................................................................................................................................................2011.001.00-----------------------------1.00--
............................................................................................................................................................................................................................TAATTTGATGGAGGAAAACATAAGGC....2611.001.00----------------------------1.00---
.................................................................................................................................................TAACTCTTTTTTTACCTCATTTT..................................................................................2311.008.00-1.00------------------------------
............................................................................................................................................................................TTTGTTTTGCACATTTCTCATACCACAT..................................................281.000.00-1.00------------------------------
..................................................................................................................................................AACTCTTTTTTTACCTCATTTTT.................................................................................231.000.00-1.00------------------------------
.................................................................................................................................................................................TTTGCACATTTCTCATACCACAA..................................................231.000.00-1.00------------------------------
....................................................................................................................................................................................GCACATTTCTCATACAAGA...................................................191.000.00-1.00------------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTAATT....................................................................................211.000.001.00-------------------------------
......................................................................CATCTTTTTATTTCCCATATCCCT............................................................................................................................................................241.000.00-1.00------------------------------
...............AATTTTTGTTGCATTATAAAAT.....................................................................................................................................................................................................................2211.001.001.00-------------------------------
..................................................................................................................................................................................................................................GATGGAGGAAAACATAAGGCAGT.2311.001.00---------------------1.00----------
.................................................................................................................................................TAACTCTTTTTTTACCTCAG.....................................................................................201.000.001.00-------------------------------
...................................................................................................................................................ACTCTTTTTTTACCTTC......................................................................................171.000.00---1.00----------------------------
....................................................................................................................AATTGAATTTTTATATCTATTT................................................................................................................2211.001.00---1.00----------------------------
......................................................................CATCTTTTTATTTCCCATACTC..............................................................................................................................................................221.000.00-1.00------------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCGT.....................................................................................201.000.001.00-------------------------------
.........................................................................................................................AATTTTTATATCTATTTTTATATT.........................................................................................................2411.001.00--1.00-----------------------------
.........................................................................................................................AATTTTTATATCTATTTTTATAT..........................................................................................................2311.001.001.00-------------------------------
..................................................................................................................................................AACTCTTTTTTTACCTCATT....................................................................................201.000.00--1.00-----------------------------
.........................................................................................................................AATTTTTATATCTATTTGTTG............................................................................................................211.000.00---1.00----------------------------
................ATTTTTGTTGCATTATCTTT......................................................................................................................................................................................................................201.000.00-------------1.00------------------
.......................................................................................................................................................................................................................................AGGAAAACATAAGGCAGTC1911.001.00-------------------1.00------------
..........................................................................................................................................................................TGTTTGTTTTGCACATTTCTCATACCACAGGC................................................321.000.00--------1.00-----------------------
.........................................................................................................................AATTTTTATATCTATTTTTATATC.........................................................................................................2411.001.00--1.00-----------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCCTT....................................................................................211.000.001.00-------------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCAA.....................................................................................201.000.001.00-------------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCAGT....................................................................................211.000.001.00-------------------------------
.............................................................................................................................................................................................................................AATTTGATGGAGGAAAACATAAGG.....2411.001.00---------------------------1.00----
......................................................................................................................................................................................ACATTTCTCATACCACAGGTATTG............................................2411.001.00--1.00-----------------------------
..................................................................................................................................................AACTCTTTTTTTACCTCATGTTTTTGTCTG..........................................................................301.000.00---1.00----------------------------
............................................................................................................................................................................TTTGTTTTGCACATTTCTCATACCAC....................................................2611.001.00-1.00------------------------------
..............TAATTTTTGTTGCATTATA.........................................................................................................................................................................................................................1911.001.001.00-------------------------------
..............................................................................................................................................ATGTAACTCTTTTTTTACC.........................................................................................1911.001.00-----------------------1.00--------
...........................................................................................................................................................................................................TTGAAGCCCCTGGGTGATAATTTGATGGAGG................3111.001.00-------1.00------------------------
.................................................................................................................................................TAACTCTTTTTTTACCTCATGTTTTT...............................................................................2611.001.00-1.00------------------------------
..............................................................................................................................................................................TGTTTTGCACATTTCTCATACCAC....................................................2411.001.00-1.00------------------------------
................................................................................................................................................................................TTTTGCACATTTCTCATACCACAGGTATT.............................................2911.001.00--------1.00-----------------------
.........................................................................................................................AATTTTTATATCTATTTTTAT............................................................................................................2111.001.00---1.00----------------------------
.........................................................................................................................AATTTTTATATCTATTTTAAT............................................................................................................211.000.00---1.00----------------------------
.................................................................AGAAGCATCTTTTTATCTC......................................................................................................................................................................191.000.00---1.00----------------------------
.........................................................................................................................AATTTTTATATCTATTTTTATATGTAAC.....................................................................................................2811.001.00---1.00----------------------------
......................................................................CATCTTTTTATTTCCCATATTCCTGGTTAT......................................................................................................................................................3011.001.001.00-------------------------------
......................................................................CATCTTTTTATTTCCCATACTCC.............................................................................................................................................................231.000.00-1.00------------------------------
......................................................................CATCTTTTTATTTCCCATATTC..............................................................................................................................................................2211.001.001.00-------------------------------
.......................................................................................................................................................................................CATTTCTCATACCACAGG.................................................1811.001.00-1.00------------------------------
....................................................................................................................................................CTCTTTTTTTACCTCATG....................................................................................1811.001.001.00-------------------------------
...................................................................................................................................................................................TGCACATTTCTCATACCACA...................................................2011.001.00-----1.00--------------------------
.................................................................................................................................................................................................................................TGATGGAGGAAAACATAAGGCAGT.2411.001.00------------------1.00-------------
................................................................................................................................................................................TTTTGCACATTTCTCATTT.......................................................191.000.00-1.00------------------------------
...........................................................................................................ATTGCTTTGAATTGAATTTTTATATCTATTT................................................................................................................3111.001.00---1.00----------------------------
.........................................................................CTTTTTATTTCCCATATTCCT............................................................................................................................................................2111.001.00-1.00------------------------------
......................................................................................................................................................................................................................................GAGGAAAACATAAGGCAG..1811.001.00------------------------------1.00-
................................................................................................................................................................................................................GCCCCTGGGTGATAATTTGATG....................2211.001.00--------------------------1.00-----
............................................................................................................................................................................TTTGTTTTGCACATTTCTCATACCTCA...................................................271.000.00-1.00------------------------------
......................................................................................................................................................................................ACATTTCTCATACCACA...................................................1711.001.00-----1.00--------------------------
...................................................................................................................................................................ATGTTTTTGTTTGTTTTGCACATCTCT............................................................271.000.00-------------1.00------------------
...........................................................................................................................TTTTTATATCTATTTTTCTTG..........................................................................................................211.000.00----------------1.00---------------
....................................................................................................................................................CTCTTTTTTTACCTCACG....................................................................................181.000.00-1.00------------------------------
.......................................................................................................................................................................................CATTTCTCATACCACA...................................................1630.670.670.33----0.33--------------------------
.............................................................................................................................TTTATATCTATTTTTATATG.........................................................................................................2020.500.50-0.50------------------------------
...........................................................................................................ATTGCTTTGAATTGAATTTT...........................................................................................................................2020.500.50-------------------------------0.50
............................................................................................................................................................................TTTGTTTTGCACATTTCTCA..........................................................2020.500.50-0.50------------------------------
............................................................................................................................TTTTATATCTATTTTTATATG.........................................................................................................2120.500.50-0.50------------------------------
......................................................................................................................................................CTTTTTTTACCTCATG....................................................................................1630.330.33-0.33------------------------------

Antisense strand
GAATAAGAGGAAAGTAATTTTTGTTGCATTATAAAATGTCTAGTAGCATCATAAGTTTTTTTGAGAGAAGCATCTTTTTATTTCCCATATTCCTGGTTATTTTCATCATTGCTTTGAATTGAATTTTTATATCTATTTTTATATGTAACTCTTTTTTTACCTCATGTTTTTGTTTGTTTTGCACATTTCTCATACCACAGGTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTC
.............................................................................................................................................((((.............((..((......))...)).............))))........................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189785SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR343334SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR343336SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR189783GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
...................................................................................................TTTTCATCATTGCTTTGCACA.................................................................................................................................. 212.000.00------2.00-------------------------
...................................................................................................TTTTCATCATTGCTTTGAGCA.................................................................................................................................. 211.000.00------1.00-------------------------
............................................AGCATCATAAGTTTTTCATG.......................................................................................................................................................................................... 201.000.00-1.00------------------------------
....................................................................................................TTTCATCATTGCTTTGGGG................................................................................................................................... 191.000.00------1.00-------------------------
...........................................................................................................................TTTTTATATCTATTTTTATAAGA........................................................................................................ 231.000.00--------------------1.00-----------
....................................................................................................TTTCATCATTGCTTTGAGA................................................................................................................................... 191.000.00------1.00-------------------------
....................................................................................................TTTCATCATTGCTTTGGG.................................................................................................................................... 181.000.00--------1.00-----------------------
....................................................................................................TTTCATCATTGCTTTGGCAA.................................................................................................................................. 201.000.00------1.00-------------------------
..................................................................................................ATTTTCATCATTGCTTTGGCAT.................................................................................................................................. 221.000.00------------------------1.00-------