| (3) BREAST | (9) CELL-LINE | (1) LIVER | (2) OTHER | (6) SKIN | (2) XRN.ip |
| AAATTATTATTTATGAAGTTGGGCCAAGGGGCCAAAAATTGTCATGATAGGGAGATCATTTCCCCAGAAATAACTGGAACCAAAATTGTTCATTTCGGAGGTTGGGGGTGAAGCTTTATTTAGGCTTATACTTTGAGCAGGAGGTGGTTTTGGTCTGTATTGTAAAGACAGTTTTTAATACACTTTTTTTTTTATTTCAGTTCTTCTACGTTTTGTGATCATGCTGGCTTTAAATATATGGGTAACAGTG .............................................................................................................................................(((((...((((.((((.........))))...))))..)))))................................................................. .............................................................................................................................................142.............................................................206.......................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330863(SRX091701) tissue: skin psoriatic involveddisease state:. (skin) | SRR189782 | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) | SRR189784 | SRR330883(SRX091721) tissue: skin psoriatic uninvolveddisease stat. (skin) | TAX577746(Rovira) total RNA. (breast) | SRR330907(SRX091745) tissue: normal skindisease state: normal. (skin) | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577744(Rovira) total RNA. (breast) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin) | SRR207119(GSM721081) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577743(Rovira) total RNA. (breast) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................CACTTTTTTTTTTATTTCTTTG................................................ | 22 | 15.00 | 0.00 | 8.00 | 4.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AATACACTTTTTTTTTAAAG...................................................... | 20 | 12.00 | 0.00 | 4.00 | 6.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TACACTTTTTTTTTTATTG..................................................... | 19 | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TAATACACTTTTTTTTTTAAG...................................................... | 21 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TACACTTTTTTTTTTACG...................................................... | 18 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TAATACACTTTTTTTTTTAAA...................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................CTTTTTTTTTTATTTCAAG................................................. | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................GTTTTGGTCTGTATTGT....................................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................ACACTTTTTTTTTTATTTATTG................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................TTCGGAGGTTGGGGGTGTGTC........................................................................................................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ACACTTTTTTTTTTATTTTG................................................... | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ATACACTTTTTTTTTTCGCC..................................................... | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................CTACGTTTTGTGATCATGCTGGC...................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................TCATTTCGGAGGTTGGGGGGTT........................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .............................................................................................TTCGGAGGTTGGGGGTTTGT......................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ...............................................................................................................................................................................TAATACACTTTTTTTTTTTAAG..................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................ACGTTTTGTGATCATGCTG........................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................CACTTTTTTTTTTATTTAGT.................................................. | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................CACTTTTTTTTTTATTTCTTTT................................................ | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ACACTTTTTTTTTTATTTTATG................................................. | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................TTTTATTTCAGTTCTTTCTA......................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ACACTTTTTTTTTTATTTAAAT................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................CACTTTTTTTTTTATTTCTTTA................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TAATACACTTTTTTTTTTTAAT..................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ACACTTTTTTTTTTATTTCCGG................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................CTTTTTTTTTTATTTCAACG................................................ | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AATACACTTTTTTTTTTAG....................................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................CTTCTACGTTTTGTG................................. | 15 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| ......................................................................................................................................................................................CTTTTTTTTTTATTTCAG.................................................. | 18 | 6 | 0.17 | 0.17 | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AAATTATTATTTATGAAGTTGGGCCAAGGGGCCAAAAATTGTCATGATAGGGAGATCATTTCCCCAGAAATAACTGGAACCAAAATTGTTCATTTCGGAGGTTGGGGGTGAAGCTTTATTTAGGCTTATACTTTGAGCAGGAGGTGGTTTTGGTCTGTATTGTAAAGACAGTTTTTAATACACTTTTTTTTTTATTTCAGTTCTTCTACGTTTTGTGATCATGCTGGCTTTAAATATATGGGTAACAGTG .............................................................................................................................................(((((...((((.((((.........))))...))))..)))))................................................................. .............................................................................................................................................142.............................................................206.......................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330863(SRX091701) tissue: skin psoriatic involveddisease state:. (skin) | SRR189782 | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) | SRR189784 | SRR330883(SRX091721) tissue: skin psoriatic uninvolveddisease stat. (skin) | TAX577746(Rovira) total RNA. (breast) | SRR330907(SRX091745) tissue: normal skindisease state: normal. (skin) | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577744(Rovira) total RNA. (breast) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin) | SRR207119(GSM721081) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577743(Rovira) total RNA. (breast) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................TAAAGCCAGCATGATCACAAAACGTAGA.................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ....................................................................................................................................................................................................ACAAAACGTAGAAGAACTGA.................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ................................................................................................................................................................................................TATTTCAGTTCTTCTATTG....................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................CAAAACGTAGAAGAACTGAAAT................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................ACGTAGAAGAACTGAAATAAAAAAAAAAGT....................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................AGATCATTTCCCCAGACA.................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ....................................................................................................................................................................................................AAAGCCAGCATGATCACAAAACGTAGAAGAACTGA................... | 35 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .....................................................................................................................................................................................................GCATGATCACAAAACGTAGAAGAACTG.......................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................TTTGGTTCCAGTTATTT...................................................................................................................................................................... | 17 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................ATGACAATTTTTGGC............................................................................................................................................................................................................. | 15 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - |