ID: uc010xzy.1_intron_0_0_chr19_49472869_r
GENE: (10)
chr19:49472819-49473081-


(2)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(1)
OVARY 		(19)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCAAGGCCTTTCCAGAGCACTTCACCTACGAGCCCAACGAGGCGGATGCGGTGAGTGGACCCTGGATTTCTGCTTAGCCAGGAGCTAAAGGGCTGGGCTTCGGTGGGGTGGGGGTCCCTCCTGGAGTGGGAAGGCCTAGAGGTGGCTGGATGCCTGGGTGGGACTGTGAGGTCCTCAGCTCACCCTGGTTTGCACCCACATCGCCGTATGCAGGCCCAGGGGTACCGCTACCCACGGCCAGCCTCGGTGCCACCGTCGCCCTC
................................................................................................((..(((((..(((((.(((((.(((((.(((....((((.......))))...)))))))).))))).(((((........)))))...........)))))..)))))...))....................................................
..............................................................................................95....................................................................................................................213................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM379267(GSM379267)
Small RNA from clear cell ovarian cancer tissue. (ovary)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
................................................................................................................................................................................................CACCCACATCGCCGTATGCAGA.................................................22122.0018.0011.00---3.001.00----1.002.00-1.00---1.00-----------1.00-1.00--------------
................................................................................................................................................................................................CACCCACATCGCCGTATGCAG..................................................21118.0018.001.005.00---1.00--2.00-------1.00-----1.001.001.00--1.00--1.00-----1.00-1.00--1.00----
.......................ACCTACGAGCCCAACGAGGCGGA.........................................................................................................................................................................................................................2313.003.00--3.00-------------------------------------------
...............................................................................................................................................................................................GCACCCACATCGCCGTATGCAGA.................................................232.000.002.00---------------------------------------------
...................................................................................................TCGGTGGGGTGGGGGTGGGC................................................................................................................................................202.000.00---2.00------------------------------------------
...................CTTCACCTACGAGCCCAAC.................................................................................................................................................................................................................................1911.001.00--------------------------1.00-------------------
.....................................................................................................................................................................................................................GCCCAGGGGTACCGCT..................................1611.001.00------------------1.00---------------------------
.......................................................TGGACCCTGGATTTCTGCTTAGCCAGGAGCTA................................................................................................................................................................................3211.001.00-------1.00--------------------------------------
........................CCTACGAGCCCAACGAGGCGGATGC......................................................................................................................................................................................................................2511.001.00------------1.00---------------------------------
..............................AGCCCAACGAGGCGGATGCGGCC..................................................................................................................................................................................................................231.000.00---------------------------------------1.00------
.....................................................................................................................................................ATGCCTGGGTGGGACTGTG...............................................................................................1911.001.00-------1.00--------------------------------------
............................................................CCTGGATTTCTGCTTTCG.........................................................................................................................................................................................181.000.00---------1.00------------------------------------
..................................CAACGAGGCGGATGCG.....................................................................................................................................................................................................................1611.001.00------------------------------------------1.00---
........................CCTACGAGCCCAACGAGGCGGATGCGGC...................................................................................................................................................................................................................281.000.00-----------------------------------1.00----------
...............................................................................................................................................................................................................................ACCGCTACCCACGGC.........................1511.001.00----------------------------------1.00-----------
.........................CTACGAGCCCAACGAGGCGGA.........................................................................................................................................................................................................................2111.001.00---------------------------------1.00------------
......................................................................................................................................................................................CCCTGGTTTGCACCCACATCGCCGTATGCAG..................................................3111.001.00-------------------------------------1.00--------
.........................................................................................................................................AGAGGTGGCTGGATGAGG............................................................................................................181.000.00--------------------1.00-------------------------
.......................ACCTACGAGCCCAACGAGGCGGATGCGGT...................................................................................................................................................................................................................2911.001.00--------------------------------1.00-------------
..................................................................................................TTCGGTGGGGTGGGGGTGGGC................................................................................................................................................211.000.00---1.00------------------------------------------
.............................................................................................TGGGCTTCGGTGGGGTG.........................................................................................................................................................1720.500.50------------0.50---------------------------------
.....................................................................................................................CTCCTGGAGTGGGAAGGC................................................................................................................................1830.330.33-------------------------------------------0.33--
....................................................GAGTGGACCCTGGAT....................................................................................................................................................................................................1580.250.25--------------------------------------------0.120.12
..........................................................................................................................................GAGGTGGCTGGATGCC.............................................................................................................1660.170.17-----0.17----------------------------------------

Antisense strand
CCAAGGCCTTTCCAGAGCACTTCACCTACGAGCCCAACGAGGCGGATGCGGTGAGTGGACCCTGGATTTCTGCTTAGCCAGGAGCTAAAGGGCTGGGCTTCGGTGGGGTGGGGGTCCCTCCTGGAGTGGGAAGGCCTAGAGGTGGCTGGATGCCTGGGTGGGACTGTGAGGTCCTCAGCTCACCCTGGTTTGCACCCACATCGCCGTATGCAGGCCCAGGGGTACCGCTACCCACGGCCAGCCTCGGTGCCACCGTCGCCCTC
................................................................................................((..(((((..(((((.(((((.(((((.(((....((((.......))))...)))))))).))))).(((((........)))))...........)))))..)))))...))....................................................
..............................................................................................95....................................................................................................................213................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM379267(GSM379267)
Small RNA from clear cell ovarian cancer tissue. (ovary)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.......................................................................................................................................................................................................................................CCACGGCCAGCCTCGTGAA............. 192.000.00------1.00---------------------1.00-----------------
.......................................................................................................................................................................................................................................CCACGGCCAGCCTCGCGCA............. 191.000.00----------------------------------------1.00-----
.................................................................................................CTTCGGTGGGGTGGGAAAA................................................................................................................................................... 191.000.00----------1.00-----------------------------------
........................................................GGACCCTGGATTTCTGTC............................................................................................................................................................................................. 181.000.00---------------------1.00------------------------
..................................................................................................................................................................................................................................GCACCGAGGCTGGCCGTGGGTAGC............. 2411.001.00--------------1.00-------------------------------
.................................................................................................................................................................GACTGTGAGGTCCTCTATT................................................................................... 191.000.00-------------------------1.00--------------------
......................................................................................................................................................................................CCCTGGTTTGCACCCACATCA............................................................ 211.000.00---------------1.00------------------------------
.......................................................................................................................................................................................................................................CCACGGCCAGCCTCGTGA.............. 181.000.00------1.00---------------------------------------
.................................................................................................................................................................GACTGTGAGGTCCTCTAAT................................................................................... 191.000.00--1.00-------------------------------------------
.................................................................................................................................................................GACTGTGAGGTCCTCTAGA................................................................................... 191.000.00-------------------1.00--------------------------
.................................................................................................................................................................GACTGTGAGGTCCTCTACT................................................................................... 191.000.00---------1.00------------------------------------