ID: uc010xpg.1_intron_6_0_chr19_16634102_r.3p
GENE: CHERP(2)
chr19:16634052-16634301-


(1)
AGO2.ip
(2)
B-CELL
(5)
BRAIN
(8)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(5)
HEART
(5)
HELA
(6)
LIVER
(2)
OTHER
(35)
SKIN
(1)
XRN.ip

Sense strand
CCTATGGGTGCGGGACAGGCCCCTCGGAGCCTGGCTCCTCGGTGCCTTGCTGCCTGGTCTTAAGCAGTGAGAGAAGATGCTGGACAGGCTCCCAGGAGGGGTTCGTCTCCTGGCCCTTCACTGAGCCCCTCCCCTCCAGCACTTGTCGCCTGGGAGATCCTGACTGGCCTGTGGTCCTGAGGCAAGTCTCTGTTTTGCAGAAATGGGGCCCCCTCACCACCACCCTGGCCACCGCATGCCTCATCCTGGC
...................................................((((.((((..((((...........))))))))))))..((((((((......)))))))).........................................................................................................................................
..................................................51.....................................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR343334SRR343336SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR343335SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343337SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM359192(GSM359192)
HepG2_3pM_6. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................GGTTCGTCTCCTGGCTGGC....................................................................................................................................19191.0018.0029.0012.00-8.00----2.00---2.002.001.002.002.00-2.002.00--1.002.00-1.001.001.00---2.002.00--2.00--1.00--1.00----1.001.00--1.001.001.00-1.00-----------1.00----1.001.00-1.00----1.00---1.001.00--
...................................................................................................GGTTCGTCTCCTGGCTGG.....................................................................................................................................18165.0018.0018.00---6.007.00--2.002.003.00-1.00--1.001.001.00--1.00---1.001.001.001.00--1.00--2.001.00----1.001.00-1.001.001.00----1.00-------1.001.001.00-1.00---1.00--1.001.00-------1.00---------
...................................................................................................GGTTCGTCTCCTGGC........................................................................................................................................15118.0018.00------3.003.00---2.00--2.00------1.001.00-1.00----2.00----1.00--------------------1.00--------------------------1.00----
...................................................................................................GGTTCGTCTCCTGGCT.......................................................................................................................................16116.0018.00------4.004.00-1.00-2.00--------1.00---------------2.00-----------1.00-------------------------------1.00------
...................................................................................................GGTTCGTCTCCTGGCTG......................................................................................................................................1719.0018.00-----1.00---2.00-------1.00---------------------------1.00-------1.00----------1.00--------1.00-1.00-----------
......................................................................................................................................TCCAGCACTTGTCGCCTGGGAGATCCTGACTGGCCTGTGGTCCTGAGGCAAGTCTCTGTTTTGC....................................................6417.007.00--7.00------------------------------------------------------------------------------------
...................................................................................................GGTTCGTCTCCTGGCCGGC....................................................................................................................................193.000.001.00--1.00------1.00----------------------------------------------------------------------------
..................................................TGCCTGGTCTTAAGCCAAC.....................................................................................................................................................................................192.000.00----------------------------2.00----------------------------------------------------------
............................................................................................................................................................................GGTCCTGAGGCAAGTCTCTGTTTTG.....................................................2512.002.00--------2.00------------------------------------------------------------------------------
.....................................................................................AGGCTCCCAGGAGGGGTTCGTCTCCTGGC........................................................................................................................................2912.002.00----2.00----------------------------------------------------------------------------------
.................................................................................................................................TCCCCTCCAGCACTTGTCGCCTGGGAGATCCTGACTGGCCTGTGGTCCTGAGGCAAGTCTCTGTTTTGC....................................................6912.002.00--2.00------------------------------------------------------------------------------------
..............................................................................................................................................................................TCCTGAGGCAAGTCTCTGTTTTGC....................................................2411.001.00-------------------------------------1.00-------------------------------------------------
.......................TCGGAGCCTGGCTCCTTT.................................................................................................................................................................................................................181.000.00--------------------------------------------------------------1.00------------------------
..................................................................................................GGGTTCGTCTCCTGGC........................................................................................................................................1611.001.00---------------------1.00-----------------------------------------------------------------
..................................................................................................GGGTTCGTCTCCTGGCTGGC....................................................................................................................................2011.001.00------------------------------1.00--------------------------------------------------------
.........................................................................................................................................................................TGTGGTCCTGAGGCAAGT...............................................................1811.001.00-------------------------------------1.00-------------------------------------------------
.................................................................................................................................................................GACTGGCCTGTGGTCCTGAGGC...................................................................2211.001.00------------------------------------------------------------1.00--------------------------
....................................................................................................GTTCGTCTCCTGGCCGGCT...................................................................................................................................191.000.00-------------1.00-------------------------------------------------------------------------
....................................................................................................GTTCGTCTCCTGGCCG......................................................................................................................................161.000.00---------1.00-----------------------------------------------------------------------------
..............................................................................................................................................................CCTGACTGGCCTGTGGTCCTGAGGCA..................................................................2611.001.00----------------------------------------------------------------------1.00----------------
........................................................................................................................................CAGCACTTGTCGCCTGGGAGATCCTGACTGG...................................................................................3111.001.00--------------------------------------------------------1.00------------------------------
.............................................................................................................................................................................................................................ACCCTGGCCACCGCATGCCTCATCC....2511.001.00---------------------------------------------------------------------------------1.00-----
.....................................................................................................................................................CTGGGAGATCCTGACTGGCC.................................................................................2011.001.00---------------------------------------------------------------1.00-----------------------
...................................................................................................GGTTCGTCTCCTGGCTTG.....................................................................................................................................1811.0018.00--------1.00------------------------------------------------------------------------------

Antisense strand
CCTATGGGTGCGGGACAGGCCCCTCGGAGCCTGGCTCCTCGGTGCCTTGCTGCCTGGTCTTAAGCAGTGAGAGAAGATGCTGGACAGGCTCCCAGGAGGGGTTCGTCTCCTGGCCCTTCACTGAGCCCCTCCCCTCCAGCACTTGTCGCCTGGGAGATCCTGACTGGCCTGTGGTCCTGAGGCAAGTCTCTGTTTTGCAGAAATGGGGCCCCCTCACCACCACCCTGGCCACCGCATGCCTCATCCTGGC
...................................................((((.((((..((((...........))))))))))))..((((((((......)))))))).........................................................................................................................................
..................................................51.....................................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR343334SRR343336SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR343335SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343337SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM359192(GSM359192)
HepG2_3pM_6. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
......................................................................................................................CACTGAGCCCCTCCCCGGA................................................................................................................. 191.000.001.00--------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................CCACCGCATGCCTCAAA..... 171.000.00------------------------------------------------------------------------------1.00--------
....................................................................................................................................................................................................................................CCACCGCATGCCTCAGGCT... 191.000.00----------------------------------------------------------------------------1.00----------
...............................................................................CTGGACAGGCTCCCAGCC......................................................................................................................................................... 181.000.00-------------------------------------------------------------------1.00-------------------
....................................................................................................................................................................................................................GGCCAGGGTGGTGGTGAG.................... 1830.330.33-------------------------------------------------------------------------------------0.33-
..........................................ACCAGGCAGCAAGGCA................................................................................................................................................................................................ 1640.250.25--------------------------------------------------------------------------------------0.25