ID: uc010xpg.1_intron_1_0_chr19_16630527_r
GENE: CHERP(7)
chr19:16630477-16631009-


(1)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(9)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(2)
HELA
(3)
LIVER
(2)
OTHER
(15)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TACTCCCCAGGAAGAAGACGCCGGTCACGGTCCAGGAGCCCCACCCCGCCGTAAGATCCTGTCTTAAGTGCTGCGCTGGTAACTCTGGGAAGCTGCGGTGCTTTGCTGTGAATGTGGAAACATTGGTGGTTAGGAGACTGTGTTAGGAGGCCGCCAGCATTAGCCCGGGGACAGTGGCACCCCTCACCCTTCACCACAGTAGCCACTTGGCGAAGCCTGAGGCAGTAACTGGGGTCTGCTTTCTAACCACCATCTGGGTTGGAGGTGTCCTGCTCTCAATGCTGAGCGTGGGGTGGGGGCCAGCGTCTGGAGCCCCCTTATCTAGCTGAGACAGGATAAACGGGTAGAGACGCAAAATCTGCATACGGTGTCACCTGGTGACAGTGAGCATGCACGCAAGCTGCGGCTGTGAGGTCCTCATCACTGTCATTCCAATAAATGTCTCAGTTACTTCTTAAAAAGAATAACCTGTCTCGATTTTAGTTCCTCTGCTGGTCTGGGTTCTAATTCGGCGCCTCCCATCCCTGACTCAA
.......................................................................................................................................................................................................................................................................................................................................((((((((...........((((((((.....))).............(((((((((((((((.((.(((.....))))))))(((...))).)))))))))..)))......)))))......((((.....))))...))))))))..........................................................
......................................................................................................................................................................................................................................................................................................................................327.........................................................................................................................................................483................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR029131(GSM416760)
MCF7. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACTGTCATTCCAATAAATGTCTCAGTTACTTCTTAAAAAGAATAACCTGTCTCGATTTTAG..................................................6517.007.007.00-----------------------------------------------------
.................................AGGAGCCCCACCCCGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................186.000.00--5.00----1.00----------------------------------------------
....................................................................................................................GAAACATTGGTGGTTAGGAGACTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................2616.006.00---6.00--------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCACTGTCATTCCAATAAATGTCTCAGTTACTTCTTAAAAAGAATAACCTGTCTCGATTTTAG..................................................6614.004.004.00-----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATAACCTGTCTCGATTTTAGA.................................................2514.002.00-3.00---------------1.00------------------------------------
................GACGCCGGTCACGGTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003.00----3.00-------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................CAGGATAAACGGGTAGAGAC......................................................................................................................................................................................2012.002.00--------2.00---------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTACTTCTTAAAAAGAATAACCT...............................................................2612.002.00-------------2.00----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATAACCTGTCTCGATTTTAG..................................................2412.002.00------------------2.00-----------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATAACCTGTCTCGATTT.....................................................2112.002.00-2.00----------------------------------------------------
...............................................................................................................................................TAGGAGGCCGCCAGCATCG...................................................................................................................................................................................................................................................................................................................................................................................191.000.00------1.00-----------------------------------------------
.......................................................................TGCGCTGGTAACTCTGGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------------------------1.00--------
..CTCCCCAGGAAGAAGACGCCGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00-----------------------------1.00------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCGCCTCCCATCCCCGAC....241.000.00-------1.00----------------------------------------------
...................................................................................................................................................................................................................................................................................................................................AGCTGAGACAGGATAAACGGGTA...........................................................................................................................................................................................2311.001.00-----1.00------------------------------------------------
................GACGCCGGTCACGGTCCCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----1.00-------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATAACCTGTCTCGATTTTAGAA................................................2611.002.00-----------------------------------1.00------------------
..................................................................................................................................................................................................................................................................................................................................................AACGGGTAGAGACGCAAAATCTGA...........................................................................................................................................................................241.000.00-------------------------------------------1.00----------
.....................................................................................................................................................................CGGGGACAGTGGCACGGT..............................................................................................................................................................................................................................................................................................................................................................181.000.00--------1.00---------------------------------------------
...................................................................................................................................................................................................................................................................................................................................AGCTGAGACAGGATAAACGGATA...........................................................................................................................................................................................231.000.00-----1.00------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCTGTCTCGATTTTAGA.................................................201.000.00------------------------1.00-----------------------------
......................................................................................................................................................................................................GTAGCCACTTGGCGAAG..............................................................................................................................................................................................................................................................................................................................1711.001.00-------------------------------1.00----------------------
...........AAGAAGACGCCGGTCACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------1.00---------------------
....................CCGGTCACGGTCCAGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------------------1.00-------------------------
.........................................................................................................................................................................................................................................................................................................................................GACAGGATAAACGGGTAGAGA.......................................................................................................................................................................................2111.001.00----------------------------------------------1.00-------
.......................GTCACGGTCCAGGAGCCCCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------------------1.00---------------------------
..................................................................................................................................TAGGAGACTGTGTTAGGAGGCCGCCAGC.......................................................................................................................................................................................................................................................................................................................................................................................2811.001.00----------1.00-------------------------------------------
..................................................................................................................................TAGGAGACTGTGTTAGGAGGCCGCCAGCACT....................................................................................................................................................................................................................................................................................................................................................................................311.000.00--1.00---------------------------------------------------
....CCCCAGGAAGAAGACGCCGGTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00---------------------------1.00--------------------------
.................................................................................................................................TTAGGAGACTGTGTTAGGAG................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-1.00----------------------------------------------------
.......................................................................................................................ACATTGGTGGTTAGGAGACTGTGTTAGGAG................................................................................................................................................................................................................................................................................................................................................................................................3011.001.00---------------------1.00--------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCGGCTGTGAACGC.....................................................................................................................191.000.00------------------------------1.00-----------------------
..............................................................................................................AATGTGGAAACATTGGTGGTTAGGAGACTGT........................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-------------------------------------1.00----------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCGCCTCCCATCCCTGACTC..2611.001.00----------------------------------------1.00-------------
......................................................................................................................AACATTGGTGGTTAGCGTG............................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------1.00-------------------------------------
....................................................................................................................GAAACATTGGTGGTTAGGAGACTGTGTTAGGA.................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00-----------------------1.00------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCCTCCCATCCCTGACTC..2311.001.00-------1.00----------------------------------------------
...............................................................................................................................................TAGGAGGCCGCCAGCATTTGGG................................................................................................................................................................................................................................................................................................................................................................................221.000.00------------------------------------1.00-----------------
.........................................................................................................................................................................................................................................................CCATCTGGGTTGGAGGTGA.........................................................................................................................................................................................................................................................................191.000.00------------1.00-----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGCTGGTCTGGGTTCTAATTCG......................2511.001.00-----------1.00------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCTGGTCTGGGTTCTAATTCGGT....................261.000.00-1.00----------------------------------------------------
...........................................................TGTCTTAAGTGCTGCGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------1.00-----------------------------------------------
................................................................................................................................................................................................................................................................................................................................................TAAACGGGTAGAGACG.....................................................................................................................................................................................1611.001.00------------1.00-----------------------------------------
...............................................................................................................................................................................................................................................................................................GTGGGGTGGGGGCCAGCG....................................................................................................................................................................................................................................1820.500.50------------------------------------------------0.50-----
...........................................................................................................................................................................................................................AGGCAGTAACTGGGGT..........................................................................................................................................................................................................................................................................................................1620.500.50--------------------------------------------------0.50---
......................................................................................................TTGCTGTGAATGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................1650.200.20---------------------------------------------------0.20--
......CCAGGAAGAAGACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1560.170.17-----------------------------------------------------0.17

Antisense strand
TACTCCCCAGGAAGAAGACGCCGGTCACGGTCCAGGAGCCCCACCCCGCCGTAAGATCCTGTCTTAAGTGCTGCGCTGGTAACTCTGGGAAGCTGCGGTGCTTTGCTGTGAATGTGGAAACATTGGTGGTTAGGAGACTGTGTTAGGAGGCCGCCAGCATTAGCCCGGGGACAGTGGCACCCCTCACCCTTCACCACAGTAGCCACTTGGCGAAGCCTGAGGCAGTAACTGGGGTCTGCTTTCTAACCACCATCTGGGTTGGAGGTGTCCTGCTCTCAATGCTGAGCGTGGGGTGGGGGCCAGCGTCTGGAGCCCCCTTATCTAGCTGAGACAGGATAAACGGGTAGAGACGCAAAATCTGCATACGGTGTCACCTGGTGACAGTGAGCATGCACGCAAGCTGCGGCTGTGAGGTCCTCATCACTGTCATTCCAATAAATGTCTCAGTTACTTCTTAAAAAGAATAACCTGTCTCGATTTTAGTTCCTCTGCTGGTCTGGGTTCTAATTCGGCGCCTCCCATCCCTGACTCAA
.......................................................................................................................................................................................................................................................................................................................................((((((((...........((((((((.....))).............(((((((((((((((.((.(((.....))))))))(((...))).)))))))))..)))......)))))......((((.....))))...))))))))..........................................................
......................................................................................................................................................................................................................................................................................................................................327.........................................................................................................................................................483................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR029131(GSM416760)
MCF7. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..............................................................................................................AATGTGGAAACATTGGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................... 198.000.00--------------2.001.001.00--1.00-----1.00---------------1.00-----1.00------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATTAGAACCCAGACCAGCAGAGGAA...................... 2813.003.00-3.00----------------------------------------------------
..............................................................................................................AATGTGGAAACATTGGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................... 192.000.00---------1.00---------1.00----------------------------------
..........................................................................................................................TTGGTGGTTAGGAGAACTG........................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00--------------------1.00---------------------------------
..................................GGAGCCCCACCCCGCCGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-----------1.00------------------------------------------
..............................................................................................................AATGTGGAAACATTGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00---------1.00--------------------------------------------
..............................................................................................................AATGTGGAAACATTGGACT.................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--------------------------------------------1.00---------
..............................................................................................................................TGGTTAGGAGACTGTGTTATGTT................................................................................................................................................................................................................................................................................................................................................................................................ 231.000.00---------1.00--------------------------------------------
................................................................................................................................................................................TACTGTGGTGAAGGGTGAGGGGTGC............................................................................................................................................................................................................................................................................................................................................ 2511.001.00----------1.00-------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................TGACAGTGAGCATGCACC......................................................................................................................................... 181.000.00----------------------1.00-------------------------------
...........................................................................................................................................................................................................................................................................................................CCAGCGTCTGGAGCCAAG........................................................................................................................................................................................................................ 181.000.00------1.00-----------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCTGTCTCGATTTA.................................................... 181.000.00-----1.00------------------------------------------------
...........................................................................................................................................................................................................................................................................................GAGCGTGGGGTGGGGGT......................................................................................................................................................................................................................................... 171.000.00---------------------------------1.00--------------------
..CTCCCCAGGAAGAAGACGCCGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2411.000.00--1.00---------------------------------------------------
............................................................................................................................................................................................................................................CAGATGGTGGTTAGAAAGCA..................................................................................................................................................................................................................................................................................... 2011.001.00-----1.00------------------------------------------------
..............................................................................................................AATGTGGAAACATTGGCTT.................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------------------------1.00--------------
...........................................................................................................................................TGCTGGCGGCCTCCTAACAC...................................................................................................................................................................................................................................................................................................................................................................................... 2011.001.00--------------------------------------1.00---------------
..............................................................................................................AATGTGGAAACATTGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00------------------------------------------1.00-----------
..............................................................................................................AATGTGGAAACATTGGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------1.00------------------------------------
..............................................................................................................AATGTGGAAACATTGGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------------1.00-------------------
......................................................................CTGCGCTGGTAACTCTTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00---------------1.00--------------------------------------
............................................................................................................................................................................................TGGCTACTGTGGTGAAG........................................................................................................................................................................................................................................................................................................................................ 1720.500.50----------0.50-------------------------------------------
...................................................................................................CCACATTCACAGCAAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................ 1820.500.50-------------------------------------------------0.50----
....................................CGGCGGGGTGGGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1560.170.17----------------------------------------------------0.17-
...................................................................................................................................................................GCCACTGTCCCCGGG................................................................................................................................................................................................................................................................................................................................................................... 1580.120.12------------------------------------------------0.12-----