ID: uc010xmq.1_intron_3_0_chr19_12875732_r
GENE: (4)
chr19:12875682-12875862-


(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(4)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(4)
SKIN

Sense strand
GAGGAAGCGGGAGTACATTGAGGAGCTGGAGCCACCCACTGACAGCAGCAGTAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCGCCAGCAGCCCGGCGGATCGAGGAGCTGCAGCATAACTTGCAGAAGAAGGACGCG
..........................................................................(((.(((....)))...))).......................................................................................
..................................................51.........................................94......................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532874(GSM532874)
G699T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCGCCAGCAG...............................................84125.0025.0018.006.00------1.00---------------
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCGCCAG..................................................81117.0017.006.0011.00----------------------
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCGCCA...................................................80116.0016.0015.00------1.00----------------
...................................................TAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCGCCAGA.................................................8112.000.0012.00-----------------------
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCGCCAGA.................................................82110.0017.00-10.00----------------------
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCGCCAGT.................................................8215.0017.005.00-----------------------
..................................................GTAAGTAGGACCTAGTGA.................................................................................................................1812.002.00----1.001.00------------------
..............................................AGCAGTAAGTAGGACCTAGTGACCAGAGGGTGGGGA...................................................................................................3612.002.00---2.00--------------------
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCG......................................................7712.002.00-2.00----------------------
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGG......................................................................................................2911.001.00----------------1.00-------
.......................................................................................................................................................CTGCAGCATAACTTGACGG...........191.000.00--1.00---------------------
...................GAGGAGCTGGAGCCACCCACTGACAGCAG.....................................................................................................................................2911.001.00----------1.00-------------
...........................................................................................................................................CGGATCGAGGAGCTGCAGCATAACTTGC..............2811.001.00---1.00--------------------
..............................................................TAGTGACCAGAGGGTGGGGAGATCCCAGAGCC.......................................................................................3211.001.00-----------------1.00------
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCGCC....................................................7911.001.00-------1.00----------------
..........GAGTACATTGAGGAGCTGGAGCCACCC................................................................................................................................................2711.001.00------------1.00-----------
...............................................................................................................................................................TAACTTGCAGAAGAAGGACGCG2211.001.00------1.00-----------------
.................TTGAGGAGCTGGAGCCACCCAC..............................................................................................................................................2211.001.00------1.00-----------------
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGGG.....................................................................................................3011.001.00----1.00-------------------
..................................................GTAAGTAGGACCTAGTGACCAGAGGGTGGGGA...................................................................................................3211.001.00----1.00-------------------
.......CGGGAGTACATTGAGGAG............................................................................................................................................................1811.001.00---------1.00--------------
..................................................GTAAGTAGGACCTAGTG..................................................................................................................1711.001.00-----1.00------------------
..................................................................................................................................................AGGAGCTGCAGCATAACT.................1811.001.00--------------------1.00---
..................................................GTAAGTAGGACCTAGTGACC...............................................................................................................2011.001.00---------------------1.00--
.........................................................................GGGTGGGGAGATCCCAG...........................................................................................1730.330.33----------------------0.33-
..................................................GTAAGTAGGACCTAG....................................................................................................................1550.200.20-----0.20------------------

Antisense strand
GAGGAAGCGGGAGTACATTGAGGAGCTGGAGCCACCCACTGACAGCAGCAGTAAGTAGGACCTAGTGACCAGAGGGTGGGGAGATCCCAGAGCCCAGCAGCGTGGAGCTGATGGGCCACCTCTTCCGCCAGCAGCCCGGCGGATCGAGGAGCTGCAGCATAACTTGCAGAAGAAGGACGCG
..........................................................................(((.(((....)))...))).......................................................................................
..................................................51.........................................94......................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532874(GSM532874)
G699T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
...........................................AGCAGCAGTAAGTAGAATG....................................................................................................................... 194.000.00--4.00---------------------
..................................................................................................................GCCACCTCTTCCGCCTCAA................................................ 191.000.00------------------1.00-----
............................................................................................................................CCGCCAGCAGCCCGGCCTG...................................... 191.000.00-------------1.00----------
................................................................................................................GGGCCACCTCTTCCGCCGGC................................................. 201.000.00-----------1.00------------
...........................................AGCAGCAGTAAGTAGAAT........................................................................................................................ 181.000.00--1.00---------------------
...............................................................................................................................CCAGCAGCCCGGCGGAG..................................... 171.000.00---------------1.00--------
.............................................................................................................................CGCCAGCAGCCCGGCTTGC..................................... 191.000.00--------------1.00---------
......................................................................................................................................................CTTCTTCTGCAAGTTATGCTGCAGC...... 2511.001.00-------------------1.00----
................................................................................................................CGGAAGAGGTGGCCC...................................................... 1530.330.33-----------------------0.33