ID: uc010xkp.1_intron_1_0_chr19_9678852_r.3p
GENE: ZNF121(2)
chr19:9678802-9679051-


(1)
B-CELL 		(2)
BRAIN 		(15)
CELL-LINE 		(1)
HEART 		(1)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AAAATTACTAAGTTTAGACCCCAAGTCCTTACGATTGCCAAATGTTCGTCATGGATAAACTGTTCAAATCTATGTCTGTTTAATTTTTTTGAGTGTGCTGAATATGACAAATAAAAATGAGCTTTATAATTCTGACTTATTTAACCTACTGTTTTGTTCTCAGACCCTATTTTTTTTTCTTTTTTTCTGTTTTACTTCAGAATGGCAAGTTAAAACCAAAGTGTCAGCACCTCAACAACATTTTTTTTTG
....................................................................................................................................................(((....((...((((.....................))))....))..)))..................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.............................................................................................................................................TAACCTACTGTTTTGTTCTCAGT......................................................................................2315.000.00--15.00--------------------------
..................................................................................................................................................TACTGTTTTGTTCTCGACC.....................................................................................198.000.00---------2.00-2.00--1.00----1.001.00-------1.00
......................AAGTCCTTACGATTGAGGC.................................................................................................................................................................................................................196.000.00-----6.00-----------------------
.....................................................................................................................................................................CCTATTTTTTTTTCTTTTTTTTTTG............................................................254.000.00----1.00--1.001.00---------------1.00----
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGTTGGCT.......................................................263.000.003.00----------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGTTGGC........................................................243.000.003.00----------------------------
..............................................................................................................................................AACCTACTGTTTTGTTCTCGACC.....................................................................................233.000.00------3.00----------------------
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGTTGGC........................................................252.000.001.001.00---------------------------
...........................................................................................................................................................................TTTTTTTCTTTTTTTCTGTTTCCC.......................................................242.000.00-2.00---------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGTTTTACCTC....................................................302.000.00-2.00---------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGTTTC.........................................................232.000.00-2.00---------------------------
...............................................................................................................................................................................................................................TCAGCACCTCAACAACATTTTTTTTCGG282.000.00---2.00-------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGTTTCAC.......................................................272.000.002.00----------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGTTAGG........................................................242.000.00-2.00---------------------------
...................................................................................................................................................................ACCCTATTTTTTTTTCTTTTTTTCTG.............................................................2612.002.00----2.00------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGGGAG.........................................................211.000.001.00----------------------------
.............................................................................................................................................................................................................................TGTCAGCACCTCAACAACATTTTTTTTTG2911.001.00---1.00-------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGTTTTGG.......................................................271.000.001.00----------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGGTTA.........................................................211.000.001.00----------------------------
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGGTG..........................................................231.000.001.00----------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGTCAGG........................................................241.000.00-1.00---------------------------
...........................................................CTGTTCAAATCTATGCTAT............................................................................................................................................................................191.000.00------------------1.00----------
...................................................................................................................................................................................................................................CACCTCAACAACATTTTTTTTG.221.000.00-------------1.00---------------
.................................................................................................................................................................AGACCCTATTTTTTTTTCTTTTTTTCTGTTTCA........................................................331.000.001.00----------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCGTAG...........................................................231.000.00-1.00---------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGTGG..........................................................221.000.00-1.00---------------------------
...............................................................................................................................................ACCTACTGTTTTGTTCTCA........................................................................................1911.001.00-------------------------1.00---
........................................................................................................................................TTATTTAACCTACTGTTTTGTTCTC.........................................................................................2511.001.00-----------------1.00-----------
...........................................................................................................................................................................TTTTTTTCTTTTTTTCTGTTGGC........................................................231.000.001.00----------------------------
..........................................................................................................................................................................................................................AAGTGTCAGCACCTCAACAACATTTTTTGGC.311.000.00-1.00---------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGTTGGG........................................................241.000.00-1.00---------------------------
...........................................................................................................................................................................TTTTTTTCTTTTTTTCTGCGGG.........................................................221.000.00-1.00---------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGTTCT.........................................................251.000.00-1.00---------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCGCAG...........................................................211.000.001.00----------------------------
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCGGTG...........................................................221.000.001.00----------------------------
.............................................................................................................................................................................TTTTTCTTTTTTTCTGTTCGAG.......................................................221.000.001.00----------------------------
...........................................................................................................................................................................TTTTTTTCTTTTTTTCGGTC...........................................................201.000.001.00----------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCGGTT...........................................................211.000.00-1.00---------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGTTTCCC.......................................................251.000.001.00----------------------------
...........................................................................................................................................................................TTTTTTTCTTTTTTTCTGCTTT.........................................................221.000.00---1.00-------------------------
....................................................................................................................................................................CCCTATTTTTTTTTCTTTTTAAAT..............................................................241.000.00-------1.00---------------------
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCGCG............................................................211.000.00-1.00---------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGTTGGCC.......................................................231.000.001.00----------------------------
.............................................................................................................................................................................TTTTTCTTTTTTTCTGTTGGC........................................................211.000.001.00----------------------------
...................................................................................................................................................................ACCCTATTTTTTTTTCTTTTTTTCTGTTTTACT......................................................3311.001.00---1.00-------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCGTC............................................................201.000.001.00----------------------------
.....................................................................................................................................................................CCTATTTTTTTTTCTTTTTTTTTAG............................................................251.000.00----1.00------------------------
.............................................................................................................................................................................TTTTTCTTTTTTTCTGTTTTTCG......................................................231.000.00-1.00---------------------------
...........................................................................................................................................................................TTTTTTTCTTTTTTTCTGGCC..........................................................211.000.00-1.00---------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGTTTTTCG......................................................241.000.00-1.00---------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGTGAGG........................................................221.000.00-1.00---------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGTTAGGT.......................................................231.000.00-1.00---------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGTC...........................................................231.000.00-1.00---------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGTTTTTA.......................................................271.000.00---1.00-------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGTGAG.........................................................231.000.00-1.00---------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGCACC.........................................................211.000.001.00----------------------------
.....................................................................................................................................................................CCTATTTTTTTTTCTTTTTATTG..............................................................231.000.00----1.00------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGGTAG.........................................................251.000.001.00----------------------------
...........................................................................................................................................................................TTTTTTTCTTTTTTTCGCAT...........................................................201.000.001.00----------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGGGGA.........................................................231.000.00-1.00---------------------------
.....................................................................................................................................................................CCTATTTTTTTTTCTTTTTTAAAG.............................................................241.000.00--------1.00--------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGGC...........................................................231.000.001.00----------------------------
.......................................................................................................................................................................TATTTTTTTTTCTTTTTTTCTGGGTG.........................................................261.000.001.00----------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGTTTTACTTC....................................................2811.001.001.00----------------------------
.................................................................................................................................................................AGACCCTATTTTTTTTAT.......................................................................181.000.00---1.00-------------------------
...................................................................................................................................................................ACCCTATTTTTTTTTGAAC....................................................................191.000.00-1.00---------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGTTGGC........................................................221.000.00-1.00---------------------------
...................................................................................................................................................................ACCCTATTTTTTTTTCTTTTTTTCTGTTTCAC.......................................................321.000.001.00----------------------------
......................................................................................................................................................................CTATTTTTTTTTCTTTTTTTCTGGCT..........................................................261.000.00-1.00---------------------------
...........................................................................................................................................TTTAACCTACTGTTTTGTTCTCAG.......................................................................................2411.001.00------------1.00----------------
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGTTGGG........................................................251.000.00-1.00---------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGTGGCT........................................................221.000.00-1.00---------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGGCC..........................................................241.000.00-1.00---------------------------
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGGCC..........................................................231.000.00-1.00---------------------------
..........................................................................................................................................................................TTTTTTTTCTTTTTTTCTGGTAG.........................................................231.000.001.00----------------------------
.............................................................................................................................................TAACCTACTGTTTTGTTCTCAGG......................................................................................231.000.00--1.00--------------------------
....................................................................................................................................................................................TTTTTTCTGTTTTACTCGG...................................................191.000.001.00----------------------------
..............................................................................................................................................................................TTTTCTTTTTTTCTGGACT.........................................................191.000.001.00----------------------------
.............................................................GTTCAAATCTATGTCTGA...........................................................................................................................................................................181.000.00---------------------------1.00-
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGTTTTACTTCAG..................................................3111.001.00-1.00---------------------------
...................................................................................................................................................................ACCCTATTTTTTTTTCTTTTTTTCCG.............................................................261.000.001.00----------------------------
.........................................................................................................................................................................................................................................AACAACATTTTTTTTGTT181.000.00---1.00-------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGGCTG.........................................................211.000.001.00----------------------------
...................................................................................................................................................................ACCCTATTTTTTTTTCTTTTTTTCTGTTTCACT......................................................331.000.00-1.00---------------------------
...............................................................................................................................................................................................................................TCAGCACCTCAACAACATTTTTTTG..251.000.00---1.00-------------------------
...................................................................................TTTTTTTGAGTGTGCTGAATAT.................................................................................................................................................2211.001.00--------------------------1.00--
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGGCAG.........................................................241.000.00-1.00---------------------------
....................................................................................................................................................................CCCTATTTTTTTTTCTTTTTTTTAAG............................................................261.000.00-------1.00---------------------
.................................................................................................................................................................AGACCCTATTTTTTTTTCTTTTTTTCTGCTT..........................................................311.000.001.00----------------------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGTTTTACC......................................................281.000.00-1.00---------------------------
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGTTAGG........................................................251.000.001.00----------------------------
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGTGTGA........................................................251.000.001.00----------------------------
......................................................................................................................................................................................TTTTCTGTTTTACTTCATA.................................................191.000.00---------------1.00-------------
........................................................................................................................................................................ATTTTTTTTTCTTTTTTTCTGTTTCA........................................................261.000.00-1.00---------------------------
...........................................................................................................................................................................TTTTTTTCTTTTTTTCTGGCG..........................................................211.000.001.00----------------------------
....................................................................................................................................................................CCCTATTTTTTTTTCTTTTTTTAATG............................................................261.000.00----1.00------------------------
.........................................................................................................................................................................TTTTTTTTTCTTTTTTTCTGTACTG........................................................251.000.00-1.00---------------------------
.......................................................................................................................................................................TATTTTTTTTTCTTTTTTTCTGTGCTG........................................................271.000.001.00----------------------------
.............................................................................................................................................................................TTTTTCTTTTTTTCTGTTCTTC.......................................................221.000.00---1.00-------------------------
......................................................................................................................................................................CTATTTTTTTTTCTTTTTATTT..............................................................221.000.00----1.00------------------------
............................................................................................................................................................................TTTTTTCTTTTTTTCTGTTAT.........................................................211.000.00---1.00-------------------------
.............................TACGATTGCCAAATGTTCGTCATGGA...................................................................................................................................................................................................2611.001.00----------1.00------------------
....................................................................................................................................................................CCCTATTTTTTTTTCTTTTTT.................................................................2170.140.14----0.14------------------------

Antisense strand
AAAATTACTAAGTTTAGACCCCAAGTCCTTACGATTGCCAAATGTTCGTCATGGATAAACTGTTCAAATCTATGTCTGTTTAATTTTTTTGAGTGTGCTGAATATGACAAATAAAAATGAGCTTTATAATTCTGACTTATTTAACCTACTGTTTTGTTCTCAGACCCTATTTTTTTTTCTTTTTTTCTGTTTTACTTCAGAATGGCAAGTTAAAACCAAAGTGTCAGCACCTCAACAACATTTTTTTTTG
....................................................................................................................................................(((....((...((((.....................))))....))..)))..................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.......................................................................................................................................................................TATTTTTTTTTCTTTTTTTACG............................................................. 221.000.00---------------------1.00-------
.......................TGGCAATCGTAAGGACT.................................................................................................................................................................................................................. 1711.001.00----------1.00------------------
.................................................................................................................................................................................TCTTTTTTTCTGTTTTACTCC.................................................... 211.000.00----------------1.00------------
.............................................................................................................................................................................TTTTTCTTTTTTTCTGCGCC......................................................... 201.000.00----------------------1.00------
......................................................................................................................................................GTTTTGTTCTCAGACCCTATTTTCTG.......................................................................... 261.000.00-----------------------1.00-----
..........................................TGTTCGTCATGGATACT............................................................................................................................................................................................... 171.000.00---1.00-------------------------