ID: uc010xil.1_intron_3_0_chr19_5040023_f.5p
GENE: KDM4B(4)
chr19:5039973-5040222+


(1)
BRAIN
(7)
CELL-LINE
(2)
CERVIX
(1)
LIVER
(1)
OTHER
(10)
SKIN
(1)
TESTES

Sense strand
AAGAAGGCCATGACAGTGGGCGAGTACCGCCGCCTGGCCAACAGCGAGAAGTACGCGGGGCGGGCAGGGCGGACCTGACCCCCGCCCCCGGGGGCACACCTGCTCATGGGGGCCCTGGGGGCAGAGAAGGTGCGGTACACGCAGCCCCCACAGCATGGCCGGCCTGCTCTGTGTGCCCCGTGTGGGCTGTGGCGACCCCTGCTCCCAGGGTGGATCTGGACCCTCTCCCGGCCTGGGCTGACCCACACCG
..........................................................................(((.((((((((((((.(((((....))))).)))))))...))))))))....((...(((((((((((((.(((.....)))..))).)))...))))))))).......................................................................
.........................................................................74........................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
..............................................................................CCCCCGCCCCCGGGGGGA..........................................................................................................................................................183253.006.00180.6772.00------------------0.33--
...............................................................................CCCCGCCCCCGGGGGGGG.........................................................................................................................................................1834.000.0021.0012.00--1.00------------------
...............................................................................CCCCGCCCCCGGGGGGGGG........................................................................................................................................................1910.000.003.007.00---------------------
..............................................................................CCCCCGCCCCCGGGGGGGG.........................................................................................................................................................1938.676.006.672.00---------------------
..............................................................................CCCCCGCCCCCGGGGG............................................................................................................................................................1636.006.004.671.33---------------------
...............................................................................CCCCGCCCCCGGGGGA...........................................................................................................................................................166.000.004.002.00---------------------
...............................................................................CCCCGCCCCCGGGGGGGA.........................................................................................................................................................186.000.003.003.00---------------------
...............................................................................CCCCGCCCCCGGGGGGA..........................................................................................................................................................174.000.004.00----------------------
..............................................................................CCCCCGCCCCCGGGGGGAG.........................................................................................................................................................1933.676.003.000.67---------------------
..............................................................................CCCCCGCCCCCGGGGGCG..........................................................................................................................................................183.000.003.00----------------------
..............................................................................CCCCCGCCCCCGGGGGGGA.........................................................................................................................................................1932.676.001.671.00---------------------
........................................................................................................CATGGGGGCCCTGGG...................................................................................................................................1502.002.00---2.00-------------------
..............................................................................CCCCCGCCCCCGGGGGA...........................................................................................................................................................1731.676.001.330.33---------------------
..............................................................................CCCCCGCCCCCGGGGGGC..........................................................................................................................................................1831.336.000.670.67---------------------
........CATGACAGTGGGCGAGTA................................................................................................................................................................................................................................1811.001.00------------------1.00----
.......................................AACAGCGAGAAGTACTGT.................................................................................................................................................................................................181.000.00---------1.00-------------
...............................................................................................................................................................CGGCCTGCTCTGTGTGC..........................................................................1711.001.00-----1.00-----------------
..............................................................................CCCCCGCCCCCGGGGAGCC.........................................................................................................................................................191.000.00----------1.00------------
...............................................................................CCCCGCCCCCGGGGGAGG.........................................................................................................................................................181.000.00-1.00---------------------
......................................................................................................................................................CAGCATGGCCGGCCTGCTCTG...............................................................................2111.001.00-------------------1.00---
.................................................................................CCGCCCCCGGGGGCACGA.......................................................................................................................................................181.000.001.00----------------------
......................................................................................................................GGGCAGAGAAGGTGCTTAG.................................................................................................................191.000.00-----------------1.00-----
..............................................................................CCCCCGCCCCCGGGGCCAC.........................................................................................................................................................191.000.001.00----------------------
..............................................................................CCCCCGCCCCCGGGGAGGT.........................................................................................................................................................191.000.00-1.00---------------------
...............................................................................CCCCGCCCCCGGGGGGCGC........................................................................................................................................................191.000.00----------------1.00------
.....................................................................................CCCCGGGGGCACACCTGG...................................................................................................................................................181.000.00------------1.00----------
...............................................................................CCCCGCCCCCGGGGGAGGG........................................................................................................................................................191.000.00---------------1.00-------
........................................ACAGCGAGAAGTACG...................................................................................................................................................................................................1521.001.00--------------1.00--------
...............................................................................CCCCGCCCCCGGGGGGGAG........................................................................................................................................................191.000.001.00----------------------
..............................................................................CCCCCGCCCCCGGGGGAG..........................................................................................................................................................1830.676.000.330.33---------------------
..............................................................................CCCCCGCCCCCGGGGGGGGG........................................................................................................................................................2030.676.000.330.33---------------------
..............................................................................CCCCCGCCCCCGGGGGAGC.........................................................................................................................................................1930.336.00---------------------0.33-
..............................................................................CCCCCGCCCCCGGGGGGCG.........................................................................................................................................................1930.336.00-0.33---------------------
..............................................................................CCCCCGCCCCCGGGGGGAA.........................................................................................................................................................1930.336.000.33----------------------
..............................................................................CCCCCGCCCCCGGGGGAGCG........................................................................................................................................................2030.336.000.33----------------------
..............................................................................CCCCCGCCCCCGGGGGGAAT........................................................................................................................................................2030.336.000.33----------------------
..............................................................................CCCCCGCCCCCGGGGGGCC.........................................................................................................................................................1930.336.00-0.33---------------------
..............................................................................CCCCCGCCCCCGGGGGGCCG........................................................................................................................................................2030.336.000.33----------------------
.....................................CCAACAGCGAGAAGT......................................................................................................................................................................................................1530.330.33----------------------0.33
..............................................................................CCCCCGCCCCCGGGGGGT..........................................................................................................................................................1830.336.000.33----------------------

Antisense strand
AAGAAGGCCATGACAGTGGGCGAGTACCGCCGCCTGGCCAACAGCGAGAAGTACGCGGGGCGGGCAGGGCGGACCTGACCCCCGCCCCCGGGGGCACACCTGCTCATGGGGGCCCTGGGGGCAGAGAAGGTGCGGTACACGCAGCCCCCACAGCATGGCCGGCCTGCTCTGTGTGCCCCGTGTGGGCTGTGGCGACCCCTGCTCCCAGGGTGGATCTGGACCCTCTCCCGGCCTGGGCTGACCCACACCG
..........................................................................(((.((((((((((((.(((((....))))).)))))))...))))))))....((...(((((((((((((.(((.....)))..))).)))...))))))))).......................................................................
.........................................................................74........................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
..............................................................................CCCCCGCCCCCGGGGGGGCG........................................................................................................................................................ 2032.000.00--------1.00--1.00-----------
..........................................................................CTGACCCCCGCCCCCTA............................................................................................................................................................... 171.000.00-------1.00---------------
..............................................................................CCCCCGCCCCCGGGGACCG......................................................................................................................................................... 191.000.001.00----------------------
..............................................................................CCCCCGCCCCCGGGGGACCG........................................................................................................................................................ 2031.000.00-1.00---------------------
................................................................................................................................................................................................................................CTCCCGGCCTGGGCTGGG........ 181.000.00------1.00----------------
..........................................................................................................................................................................GTGTGCCCCGTGTGGGGTAC............................................................ 201.000.00--1.00--------------------
..............................................................................CCCCCGCCCCCGGGGACC.......................................................................................................................................................... 181.000.00-------------1.00---------
..GAAGGCCATGACAGTGGGCC.................................................................................................................................................................................................................................... 201.000.00--1.00--------------------