ID: uc010xdc.1_intron_7_0_chr18_45395808_r.3p
GENE: (2)
chr18:45395758-45396007-


(1)
AGO1.ip 		(2)
B-CELL 		(2)
BRAIN 		(13)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(4)
SKIN

Sense strand
AAACATCTGCTAGTGCTGCTGCATACTTTTATCAGATCCATTAAATAGTACATTTTTGTTCTTGATTCTCACTAAAACTAACTAAATGGCTGTCATTCTTTTCTTTATGCTTTTATTGTACTAATTTAGCCCATTTGACTGCACTTTTTTTTTTTTTTTTTTAAAGTTCCCTCCTTTCTTTTCCCCTTGCTTCCCAACAGGTCTCTTGATGGTCGTCTCCAGGTATCCCATCGAAAAGGATTGCCACATG

........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR037936(GSM510474)
293cand1. (cell line)		SRR040030(GSM532915)
G013N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAAAG...................................................................................2696.000.0032.0036.0012.00-14.00-2.00------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAAAAG.................................................................................2727.000.0011.0014.002.00----------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAATAG.................................................................................2723.000.0011.008.003.00-1.00--------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACTAG.................................................................................2718.000.006.005.005.00-1.00---------------1.00----------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACCAG.................................................................................278.000.005.003.00-----------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAAAT..................................................................................268.000.003.001.002.00-2.00--------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAGG....................................................................................256.000.003.002.00--1.00--------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAAAAG..................................................................................276.000.002.003.00--1.00--------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAAGG..................................................................................266.000.001.003.001.001.00---------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAAAT...................................................................................265.000.003.001.001.00----------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTATTG....................................................................................254.000.002.002.00-----------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAATG..................................................................................264.000.002.00-1.00---1.00------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAAT...................................................................................254.000.001.002.00----1.00------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAAAA...................................................................................264.000.002.00-1.00-1.00--------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAATT..................................................................................263.000.002.001.00-----------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAAAGG..................................................................................273.000.002.001.00-----------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAATAG...................................................................................263.000.003.00------------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTATAG....................................................................................253.000.00-2.00--1.00--------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACAAG.................................................................................273.000.00-3.00-----------------------------
......................................................................................................................................................................................................AGGTCTCTTGATGGTCGTCTC...............................2112.002.00----------1.00----------1.00---------
.............................................................................................................................................................................CTTTCTTTTCCCCTTGCTTCCC.......................................................2212.002.00--------2.00----------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACCGG.................................................................................272.000.001.001.00-----------------------------
.......................................................................................................................................TGACTGCACTTTTTTTTC.................................................................................................182.000.00-----2.00-------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACATG.................................................................................272.000.002.00------------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACCG..................................................................................262.000.001.001.00-----------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAATCAG..................................................................................272.000.00-2.00-----------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAATTG.................................................................................272.000.002.00------------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACTTG.................................................................................272.000.00--1.00-1.00--------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTATTAT...................................................................................262.000.001.00-1.00----------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAATGG.................................................................................272.000.001.00--1.00---------------------------
...........................................................................................................................................TGCACTTTTTTTTTTTTTTTTTTCGAG....................................................................................272.000.00---2.00---------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAAATG..................................................................................272.000.001.001.00-----------------------------
....................................TCCATTAAATAGTACATTTTTGTTCTTGATT.......................................................................................................................................................................................3111.001.00---------------1.00---------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACCAT.................................................................................271.000.00-1.00-----------------------------
.........................................................................................................................................ACTGCACTTTTTTTTTTTTTTTGG.........................................................................................241.000.00---1.00---------------------------
....................................................................................................................................ATTTGACTGCACTTTTTTTTTTTTTT............................................................................................2611.001.00---1.00---------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAGGTT.................................................................................271.000.00---1.00---------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAACAA.................................................................................271.000.00-1.00-----------------------------
....................................................................................................................................ATTTGACTGCACTTTTTTTTTTTTTTTTC.........................................................................................291.000.00-----1.00-------------------------
......................................................................................................................................................................................................AGGTCTCTTGATGGTCGT..................................1811.001.00-----------1.00-------------------
......................................................................................................................................................................................................AGGTCTCTTGATGGTCGTCTCCAGGTACCCC.....................311.000.00---1.00---------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAGTTAAG...............................................................................291.000.00-----1.00-------------------------
......................................................................................................................................TTGACTGCACTTTTTTTTTTTTGAG...........................................................................................251.000.00-----1.00-------------------------
........................................................................................................................................................................................................GTCTCTTGATGGTCGTCTCCA.............................2111.001.00-------------------------1.00-----
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTACGGG...................................................................................261.000.00-1.00-----------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTATTAG...................................................................................261.000.001.00------------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAGTCAGC...............................................................................291.000.00-----1.00-------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAAACTG.................................................................................281.000.00-1.00-----------------------------
...............................................................................................................................................................................................................GATGGTCGTCTCCAGGTAT........................1911.001.00---------1.00---------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAACTC.................................................................................271.000.00--1.00----------------------------
.......................................................................................................................................TGACTGCACTTTTTTTTTTTTTTTC..........................................................................................2511.001.00---1.00---------------------------
.....................................................................................................................................TTTGACTGCACTTTTTTTTTTTTCT............................................................................................251.000.00-----1.00-------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAGTGG.................................................................................271.000.00-1.00-----------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAATGG...................................................................................261.000.001.00------------------------------
......................................................................................TGGCTGTCATTCTTTTCTTTTTG.............................................................................................................................................231.000.00-----1.00-------------------------
.....................................................................................................................................TTTGACTGCACTTTTTTTTTTTCTTT...........................................................................................261.000.00---1.00---------------------------
.....................................................................................................................................TTTGACTGCACTTTTTTTTTTTTTTTTTTT.......................................................................................301.000.00---1.00---------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAGCCGG................................................................................281.000.00---1.00---------------------------
..........................................................................................................................................................................................................CTCTTGATGGTCGTCTCCAGGG..........................221.000.00-----------------1.00-------------
.................................................................................................................................................................................................................................TCCCATCGAAAAGGATTG.......1811.001.00---------1.00---------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAATA..................................................................................261.000.001.00------------------------------
...........................................................................................................................................TGCACTTTTTTTTTTTTTTTTTCGG......................................................................................251.000.00---1.00---------------------------
...........................................................................................................................................TGCACTTTTTTTTTTTTTTTTAC........................................................................................231.000.00---1.00---------------------------
.......................................................................................................................................................................................................GGTCTCTTGATGGTCGTCTCCAG............................2311.001.00------------------1.00------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAGCA..................................................................................261.000.00---1.00---------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACACC.................................................................................271.000.00---1.00---------------------------
...........................................................................................................................................TGCACTTTTTTTTTTTTTTTTTAGAG.....................................................................................261.000.00---1.00---------------------------
.......................................................................................................................................TGACTGCACTTTTTTTTTTTTTTTTTTTT......................................................................................291.000.00-----1.00-------------------------
..................................................................................................................................................TTTTTTTTTTTTTTTTAAAGTTCAGTG.............................................................................271.000.00-----1.00-------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACTAT.................................................................................271.000.00--1.00----------------------------
......................................................................................................................................................TTTTTTTTTTTTAAAGTTCCGAG.............................................................................231.000.00------------------------1.00------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAACTG.................................................................................271.000.00------1.00------------------------
...........................................................................................................................................TGCACTTTTTTTTTTTTTTTTTCGGG.....................................................................................261.000.00---1.00---------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACCA..................................................................................261.000.00-1.00-----------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTATTTG...................................................................................261.000.00-1.00-----------------------------
.......................................................................................................................................TGACTGCACTTTTTTTTTTTTTTT...........................................................................................2411.001.00-----1.00-------------------------
...........................................................................................................................................TGCACTTTTTTTTTTTTTTCCC.........................................................................................221.000.00---1.00---------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAAATT.................................................................................271.000.00--1.00----------------------------
...............................................................................................................................................................................................................GATGGTCGTCTCCAGGTATCCCAT...................2411.001.00----------1.00--------------------
.........................................................................................................................................ACTGCACTTTTTTTTTTTTTTTTTTCAG.....................................................................................281.000.00-----1.00-------------------------
....................................................................................................................................ATTTGACTGCACTTTATAG...................................................................................................191.000.00------------1.00------------------
.........................................................................................................................................ACTGCACTTTTTTTTTTATCT............................................................................................211.000.00---1.00---------------------------
.......................................................................................................................................TGACTGCACTTTTTTTTTTTTTTTTTTTTTT....................................................................................311.000.00-----1.00-------------------------
..............................................................................................................................................................................................................................GTATCCCATCGAAAAGG...........1711.001.00-----------------------1.00-------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAACG..................................................................................261.000.001.00------------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAAAAAG.................................................................................281.000.001.00------------------------------
.....................................................................................................................................TTTGACTGCACTTTTTTTTTTTTTTTT..........................................................................................2711.001.00---1.00---------------------------
.....................................................................................................................................TTTGACTGCACTTTTTTTTTTTTTCT...........................................................................................261.000.00-----1.00-------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACC...................................................................................251.000.00---1.00---------------------------
............................................................................................................................................GCACTTTTTTTTTTTTTTTTTACG......................................................................................241.000.001.00------------------------------
..........................................................................................................................................CTGCACTTTTTTTTTTTTTTTTTTAAAG....................................................................................2811.001.00------1.00------------------------
......................................................................................................................................TTGACTGCACTTTTTTTTTTTGAG............................................................................................241.000.00-----1.00-------------------------
..............................................................................................................................................................................................................TGATGGTCGTCTCCAGG...........................1711.001.00----------------1.00--------------
............................................................................................................................................GCACTTTTTTTTTTTTTTTTTTAAAACCG.................................................................................291.000.00------1.00------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTACACG...................................................................................261.000.00-1.00-----------------------------
.................................................................................................................................................TTTTTTTTTTTTTTTTTAAAGTTCCCGA.............................................................................281.000.00---1.00---------------------------
.......................................................................................................................................TGACTGCACTTTTTTTTTTTTTTTTTGAG......................................................................................291.000.00---1.00---------------------------
.................................................................................................................................................TTTTTTTTTTTTTTTTTAAAGTTCTTT..............................................................................271.000.00----1.00--------------------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTATTTT...................................................................................261.000.00----1.00--------------------------
...........................................................................................................................................................................................................TCTTGATGGTCGTCTCCAGGTATCCC.....................2611.001.00-------------------1.00-----------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACAC..................................................................................261.000.001.00------------------------------
.............................................................................................................................................................................................................TTGATGGTCGTCTCCAGG...........................1811.001.00--------------------------1.00----
.........................................................................................................................................ACTGCACTTTTTTTTTTTTTTTTTAAAG.....................................................................................281.000.00------1.00------------------------
.................................................................................................................................................................................................................................TCCCATCGAAAAGGATTGCCAC...2211.001.00--------------1.00----------------
.............................................................................................................................................CACTTTTTTTTTTTTTTTTTTAAAATA..................................................................................271.000.00-1.00-----------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAACCCG.................................................................................271.000.00-1.00-----------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAGGTAG................................................................................281.000.00---1.00---------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAAATG.................................................................................271.000.00-1.00-----------------------------
...........................................................................................................................................TGCACTTTTTTTTTTTTTTTTTAAAG.....................................................................................261.000.00-----1.00-------------------------
..............................................................................................................................................ACTTTTTTTTTTTTTTTTTTAAAAGGG.................................................................................271.000.00---1.00---------------------------
.......................................................................................................................................................................................................GGTCTCTTGATGGTCGTC.................................1811.001.00---------------------------1.00---
...........................................................................................................................................TGCACTTTTTTTTTTTTTTTTTCGAG.....................................................................................261.000.00---1.00---------------------------
...........................................................................................................................................TGCACTTTTTTTTTTTTTTTTTTAAAG....................................................................................2720.500.50---0.50---------------------------
...........................................................................................................................................TGCACTTTTTTTTTTTTTTTTTTAA......................................................................................2560.170.17---0.17---------------------------

Antisense strand
AAACATCTGCTAGTGCTGCTGCATACTTTTATCAGATCCATTAAATAGTACATTTTTGTTCTTGATTCTCACTAAAACTAACTAAATGGCTGTCATTCTTTTCTTTATGCTTTTATTGTACTAATTTAGCCCATTTGACTGCACTTTTTTTTTTTTTTTTTTAAAGTTCCCTCCTTTCTTTTCCCCTTGCTTCCCAACAGGTCTCTTGATGGTCGTCTCCAGGTATCCCATCGAAAAGGATTGCCACATG

........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR037936(GSM510474)
293cand1. (cell line)		SRR040030(GSM532915)
G013N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)
...................................................ATTTTTGTTCTTGATCATC.................................................................................................................................................................................... 196.000.00-------6.00-----------------------
..........................................................................................................................................................GAACTTTAAAAAAAA................................................................................. 1501.001.00-----------------------------1.00-
.......................................................................................................................................TGACTGCACTTTTTTTGG................................................................................................. 181.000.00----------------------------1.00--
..............................................................................................................................................................................................................................ATCCTTTTCGATGGGATAC......... 1911.001.00----------------------1.00--------
...................................................................................................................................................TTTTTTTTTTTTTTTAAAGTTCTT............................................................................... 241.000.00-------------1.00-----------------
................................................................................................................................................GAACTTTAAAAAAAAAAAAAAAAAA................................................................................. 2580.120.12------------------------------0.12