ID: uc010wzp.1_intron_10_0_chr18_9588852_r.3p
GENE: PPP4R1(3)
chr18:9588802-9589051-


(4)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(7)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(3)
OTHER 		(20)
SKIN 		(1)
XRN.ip

Sense strand
TGAAGATAAGGTCCTCCTTTCACTCATGGGATTGATCTGTGTATGATTCTGAAAAGGAATGCAGAATTAAAGGATGTTGTCTCAAGTCCTTTATATTTTGAAGATGAAAGTCCATAGCCTTCCTAAGTACCCTCAAGAACAGATAAAGGTTTTGTTGCTGCAGGAGAACATGTTTGCTCACATTGCCGTTATTTCAATAGAACCAACTGTGAGAGCGGAGCTGATGGAACAGGTGCCTCACATCGCACTG
......................................................(((((..((((((((((((((..........)))))))).))))))..(((....))).......)))))......(((((..((((((.......))))))..)).)))......................................................................................
..................................................51..................................................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189784SRR029128(GSM416757)
H520. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343337SRR343336SRR343335SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................AAAGGTTTTGTTGCTGATT.......................................................................................1921.000.0010.005.00---1.003.00------------2.00-----------------------------------
................................................................................................................................................AAAGGTTTTGTTGCTGATTT......................................................................................2018.000.006.009.00---2.00--1.00----------------------------------------------
................................................................................................................................................AAAGGTTTTGTTGCTGAT........................................................................................1812.000.00-2.008.00-----2.00----------------------------------------------
...............................................................................................................................TACCCTCAAGAACAGAATG........................................................................................................193.000.00----3.00--------------------------------------------------
....................................................................................................................................................................................................................GAGCGGAGCTGATGGAACAGG.................2113.003.00----------2.001.00-------------------------------------------
............................................................................................................................................................................................................AACTGTGAGAGCGGAGCTG...........................1913.003.00--------------2.00---------------------1.00------------------
................................................................................................................................................AAAGGTTTTGTTGCTGCTT.......................................................................................192.000.00--2.00----------------------------------------------------
...................................................................................................................................................................................................................AGAGCGGAGCTGATGGAACAG..................2112.002.00-------------2.00-----------------------------------------
...................................................................................................................................CTCAAGAACAGATAAAGGTTTTGTTGCTGCAGGAGAACATGTTTGCTCACATTGCCGTTATTT........................................................6312.002.00-----------------2.00-------------------------------------
.................................................................................................................................................AAGGTTTTGTTGCTGATTT......................................................................................192.000.001.00-----1.00------------------------------------------------
................................................................................................................................................................................................................GTGAGAGCGGAGCTGATG........................1812.002.00---------2.00---------------------------------------------
.......................................................................................................................................................................................................................CGGAGCTGATGGAACAGGT................1911.001.00---1.00---------------------------------------------------
...............................................................................................................................TACCCTCAAGAACAGAA..........................................................................................................171.000.00----1.00--------------------------------------------------
...................................................................................................................................................................................................................AGAGCGGAGCTGATGGAACAGG.................2211.001.00---------------------------------------1.00---------------
...................................................AAAAGGAATGCAGAATTCTG...................................................................................................................................................................................201.000.00---------------1.00---------------------------------------
......................................................................................................................CTTCCTAAGTACCCTCAAGAACAGATAAAGG.....................................................................................................3111.001.00------------------------------------------------1.00------
.........................................................................................................................................................................................................ACCAACTGTGAGAGCGGAGCTGATGGAACAGG.................3211.001.00---1.00---------------------------------------------------
..........................................................................................................................................................................................................CCAACTGTGAGAGCGGAGCTGATG........................2411.001.00-------------------------------------1.00-----------------
....................................................AAAGGAATGCAGAATGTC....................................................................................................................................................................................181.000.00-----------------------------------------------1.00-------
......................................................................................................................................................TTTGTTGCTGCAGGAGAACATGTT............................................................................2411.001.00--------------------1.00----------------------------------
............................................................................................................................................................................................................AACTGTGAGAGCGGAGCTGATGGAACA...................2711.001.00-----------------------------------------1.00-------------
..............................................................................................................................................................................................ATTTCAATAGAACCAAATG.........................................191.000.00-------1.00-----------------------------------------------
......................................................................................................................................................................................................AGAACCAACTGTGAGAGC..................................1811.001.00----------------------------1.00--------------------------
......................................................................................................................................................................................................................GCGGAGCTGATGGAACAGGT................2011.001.00---1.00---------------------------------------------------
.......................................................................................................................................................................................................GAACCAACTGTGAGAGCGGA...............................2011.001.00--------------------------------------------1.00----------
.................TTTCACTCATGGGATTGATC.....................................................................................................................................................................................................................2011.001.00------------1.00------------------------------------------
................................................................................................................................................AAAGGTTTTGTTGCTGGATC......................................................................................201.000.00-----1.00-------------------------------------------------
......................................................................................................................................................................................................AGAACCAACTGTGAGAGCG.................................1911.001.00---------------------------------1.00---------------------
......................................................................................................................................................................................................AGAACCAACTGTGAGAGCGG................................2011.001.00--------------------------1.00----------------------------
..........................................................................................................................................................................................................................AGCTGATGGAACAGGTGC..............1811.001.00----------------------------------1.00--------------------
.............................................................................................................................................................................................................ACTGTGAGAGCGGAGCTGATGGAACAGGTGC..............3111.001.00---1.00---------------------------------------------------
........................................................................................................................................................................................................AACCAACTGTGAGAGCGG................................1811.001.00------------------1.00------------------------------------
....................................................................................................................................................................AGAACATGTTTGCTCACATTGC................................................................2211.001.00------------------1.00------------------------------------
...................................................................................................................................................................................................AATAGAACCAACTGTGAGAGCGG................................2311.001.00-----------1.00-------------------------------------------
........................................................................................................................................................................................................................GGAGCTGATGGAACAAAT................181.000.00----------------1.00--------------------------------------
...............................................................................................................................................................................................................TGTGAGAGCGGAGCTGATGGA......................2111.001.00--------------------------------------1.00----------------
......................................................................................................................................................................................................................GCGGAGCTGATGGAACAGGTG...............2111.001.00----------------------------------------1.00--------------
..........................................................................................................................................................................................................................AGCTGATGGAACAGGTGT..............181.000.00------------------------------1.00------------------------
................................................................................................................................................AAAGGTTTTGTTGCTGGTTT......................................................................................201.000.001.00------------------------------------------------------
.................................................................ATTAAAGGATGTTGTCTCAAGTC..................................................................................................................................................................2311.001.00------------1.00------------------------------------------
................................................................................................................................................................................................................GTGAGAGCGGAGCTGATGGAACAGG.................2511.001.00---1.00---------------------------------------------------
................................................................................................................................ACCCTCAAGAACAGATAAAGGTTTTGTTGCTGCAGGAGAACATGTTTGCTCACATTGCCGTTATT.........................................................6511.001.00----------------------1.00--------------------------------
......................................................................................................................................................................................................................GCGGAGCTGATGGAACAG..................1811.001.00---------------------------1.00---------------------------
................................................................................................................................................AAAGGTTTTGTTGCTGCTTT......................................................................................201.000.00--1.00----------------------------------------------------
.........................................................................................................................................................................................................................GAGCTGATGGAACAGGTGCCTCACA........2511.001.00-----------------------1.00-------------------------------
................................................................................................................................................AAAGGTTTTGTTGCTGCT........................................................................................181.000.00--1.00----------------------------------------------------
....................................................................................................................................................GTTTTGTTGCTGCAGGAGAACATGTT............................................................................2611.001.00-------------------------1.00-----------------------------
......................................................................................................................................................................................................AGAACCAACTGTGAGAGCGGAGCTGA..........................2611.001.00---------------------1.00---------------------------------
..........................................................................................................................................................................................................................AGCTGATGGAACAGGTGCCTCATA........241.000.00-----------------------------1.00-------------------------
............................................................................................................................................................................................................AACTGTGAGAGCGGAGCTGATGGAACAGGTGCCT............3411.001.00-------------------------------------------1.00-----------
....................................................................................................................................................................................................................GAGCGGAGCTGATGGAACAGGTGC..............2411.001.00-----------------------------------1.00-------------------
............................................................................................................................................................................................................AACTGTGAGAGCGGAGCT............................1811.001.00---------1.00---------------------------------------------
...........................................................................................................................................................................................................CAACTGTGAGAGCGGA...............................1611.001.00------------------------------------------1.00------------
..............................................................................................................................................................................................................CTGTGAGAGCGGAGCTGATGGAACAGGTGCCT............3211.001.00-------------------------------1.00-----------------------
..........................................................................................................................................................................................................................AGCTGATGGAACAGGTGCA.............1911.001.00----------------------------------------------1.00--------
...............................................................................................................................................................................................TTTCAATAGAACCAACTGTGAGAGCGG................................2711.001.00---------------1.00---------------------------------------
...............................................................................................................................TACCCTCAAGAACAGATTTGT......................................................................................................211.000.00----1.00--------------------------------------------------
..........................................................................................................................................................................................................................AGCTGATGGAACAGGTGCC.............1911.001.00------------------------1.00------------------------------
...............................................................................................................................TACCCTCAAGAACAGATTT........................................................................................................191.000.00-------1.00-----------------------------------------------
........................................................................GATGTTGTCTCAAGTCCTTT..............................................................................................................................................................2011.001.00--------------------1.00----------------------------------
......................................................................................................................................................................................................AGAACCAACTGTGAGAGCGGAGCT............................2411.001.00---------------------------------------------1.00---------
...............................................................................................................................TACCCTCAAGAACAGACTC........................................................................................................191.000.00----1.00--------------------------------------------------
.................................................................................................................................................................................................................TGAGAGCGGAGCTGATGGAACAGGTGC..............2711.001.00---1.00---------------------------------------------------
...............................................................................................................................TACCCTCAAGAACAGATTC........................................................................................................191.000.00-------1.00-----------------------------------------------
......................................................................................................................................................................................................................GCGGAGCTGATGGAAC....................1620.500.50-------------------------------------------------0.50-----
.......................................................................................................................................................................................................................CGGAGCTGATGGAACAG..................1720.500.50--------------------------------------------------0.50----
...........................................................................................................AAGTCCATAGCCTTCCT..............................................................................................................................1720.500.50----------0.50--------------------------------------------
.......................................................................................................................................................................................................................CGGAGCTGATGGAAC....................1530.330.33-----------0.33-------------------------------------------
......................................................................................................................................................................................................................GCGGAGCTGATGGAA.....................1530.330.33------------0.33------------------------------------------

Antisense strand
TGAAGATAAGGTCCTCCTTTCACTCATGGGATTGATCTGTGTATGATTCTGAAAAGGAATGCAGAATTAAAGGATGTTGTCTCAAGTCCTTTATATTTTGAAGATGAAAGTCCATAGCCTTCCTAAGTACCCTCAAGAACAGATAAAGGTTTTGTTGCTGCAGGAGAACATGTTTGCTCACATTGCCGTTATTTCAATAGAACCAACTGTGAGAGCGGAGCTGATGGAACAGGTGCCTCACATCGCACTG
......................................................(((((..((((((((((((((..........)))))))).))))))..(((....))).......)))))......(((((..((((((.......))))))..)).)))......................................................................................
..................................................51..................................................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189784SRR029128(GSM416757)
H520. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343337SRR343336SRR343335SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................TCCATAGCCTTCCTAAC........................................................................................................................... 171.000.00--------------------------------1.00----------------------
...................................................................................................................................................................GAGAACATGTTTGCTAGGC.................................................................... 191.000.00----------------1.00--------------------------------------
.............................................................ACATCCTTTAATTCTG............................................................................................................................................................................. 1641.001.00---------------------------------------------------0.500.250.25-
..................................................................................................................................................................................................ACAGTTGGTTCTATTG........................................ 1630.330.33---------------------0.33---------------------------------
..............................................................................ATAAAGGACTTGAGAC............................................................................................................................................................ 1690.110.11------------------------------------------------------0.11