ID: uc010wuc.1_intron_8_0_chr17_78115181_r
GENE: (4)
chr17:78115131-78115630-


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(12)
CELL-LINE 		(1)
HEART 		(7)
HELA 		(1)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
XRN.ip

Sense strand
GAAAAACAGCCACCTTCAGTATCTCAGTCCTCCAGTGTTTGGATATTCAGGTAATTTGCCATTCTTAAAACAAACTGTTATGTAATTCTAGGAAATACTTGCTTTTTCTTCTGTAACTACAGTGTTCAAAAAGTACAATTTAAAATTTTCTAGTATGTATTGACTCAGCAAATTTTTACACAGAGTCTTAGTTGTACACTAATATATGCACTAATATTCTGTCATGATTTTCTATTTAACTAGAGGAAGCTCTTGTCTGCAGACGAGGATGCTGACACATTAAGTTATTGTTGGATTTGCAATTTAAATGACAATATTTGCTAACCTGTAAGAGATGAGAAGTATGATTAATATGAGATAGTATTTCTCATATAGATCTGAGTGTGAATTACTACAATCCACTTTGATAATACTGCGGATTCTCTATTTTCTGATAAATTATTTCACCAGGTTCGTGAAACTCAAGCTTTGATCTTGGCTCCCACAAGAGAGTTGGCTGT
................................................................................................................................................................................................................................................................................................................................................(((((...((....((((((((.......))))))))..(((.(((((.((..........))))))).))).......))..)))))............................................................................
............................................................................................................................................................................................................................................................................................................................................333.............................................................................................429.....................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029128(GSM416757)
H520. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577743(Rovira)
total RNA. (breast)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343335
................................CAGTGTTTGGATATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................18114.0014.0011.00--2.00--------1.00-----------------------------
..................................GTGTTTGGATATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................16212.0012.008.500.50-2.50------------------0.50-------------------
.................................................................................................................................................................................................................................................................................................................................................AGAAGTATGATTAATGGGG................................................................................................................................................1912.000.00----4.003.00-3.00----------1.00-------1.00---------------
.................................AGTGTTTGGATATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................17211.5011.507.500.50-2.50-----------------0.50-----------------0.50--
..............................................................................................................................................................................................................TGCACTAATATTCTGTCATGATTTTCTATTTAACTAGAGGAAGCTCTTGTCTGCAGACGAGGATGCTGACACATTAAGT.......................................................................................................................................................................................................................79110.0010.00--10.00---------------------------------------
.................................................................................................................................................................................................................................................................................................................AAATGACAATATTTGCTAACCTGTAAGAGATGAGAAGTATGATTAATATGAGATAGTAT........................................................................................................................................5919.009.00-9.00----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................AGAAGTATGATTAATGGG.................................................................................................................................................186.000.00----1.001.00-1.00-3.00--------------------------------
.....................TCTCAGTCCTCCAGTGTTTGGATATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2914.004.004.00-----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................TAGATCTGAGTGTGAATTACTACAATCCACTTTGATAATACTGCGGATTCTCTATTTT......................................................................5813.003.00-3.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................TTGATAATACTGCGGATTCTCT...........................................................................2212.002.00-----------------2.00------------------------
.................................AGTGTTTGGATATTCAGGTAATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00----------------------------------1.00-------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTCGTGAAACTCAA...................................1711.001.00------------------------1.00-----------------
............................................................................................................................................................................................................................................................................ATGCTGACACATTAATAG......................................................................................................................................................................................................................181.000.00---------------1.00--------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAAACTCAAGCTTTG.............................1811.001.00---------------------------1.00--------------
..............................................................................................................................................................................................................................................................................................................................................ATGAGAAGTATGATTATA....................................................................................................................................................181.000.00-------------1.00----------------------------
...................................................................................................TGCTTTTTCTTCTGTAGACC.............................................................................................................................................................................................................................................................................................................................................................................................201.000.00------1.00-----------------------------------
..............................................................................................................................................................................TTTACACAGAGTCTTAGTTGTACACT............................................................................................................................................................................................................................................................................................................2611.001.00-------------------------1.00----------------
.AAAAACAGCCACCTTCAGTATCTCAGTCCCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................331.000.00------1.00-----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTCTCTATTTTCTGATAAATTATTTCA......................................................3111.001.00---------------------------------1.00--------
.AAAAACAGCCACCTTCAGTATCCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00------1.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................TATTTGCTAACCTGTAAGAGATGAGAAG..............................................................................................................................................................2811.001.00-----------------------------1.00------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTCAAGCTTTGATCTTGGC.....................2311.001.00-------------------------------1.00----------
...............................................................................................................................................................................................................................................CTAGAGGAAGCTCTTATTT..................................................................................................................................................................................................................................................191.000.00-------------------1.00----------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAGAGAGTTGGCTG.1811.001.00-----------------------------------1.00------
..............................................................................................ATACTTGCTTTTTCTTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------1.00-----------------------------------
.................................AGTGTTTGGATATTCAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------1.00-------------------------
.................................................................................................................................................................................................................................................................................................................................................AGAAGTATGATTAATATGAGATAGTATT.......................................................................................................................................2811.001.00------------------------------------1.00-----
.......AGCCACCTTCAGTATCTCAGTCCTCCAGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00--------1.00---------------------------------
......................................TTGGATATTCAGGTAATTTGCCATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00--------------------1.00---------------------
................................................................................................ACTTGCTTTTTCTTCTGTAACTAC............................................................................................................................................................................................................................................................................................................................................................................................2411.001.00--------1.00---------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTTCGTGAAACTCAAGCTTTGATC..........................2711.001.00--------------------------------------1.00---
..................................................................................................................................................................................................................................................................................................................................AACCTGTAAGAGATGAGAAG..............................................................................................................................................................2011.001.00----------1.00-------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGAAACTCAAGCTTT..............................2011.001.00------------1.00-----------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCTTGGCTCCCACAAGAGAGTTGGC...2811.001.00--------------1.00---------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACAAGAGAGTTGGCTG.1911.001.00----------------1.00-------------------------
..............................................................................................................................................................................................................................................................................................................................................ATGAGAAGTATGATTATC....................................................................................................................................................181.000.00-------------1.00----------------------------
.................................................................................................................................................................................................................................................................................................................................................AGAAGTATGATTAATGG..................................................................................................................................................171.000.00-----1.00------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTTCGTGAAACTCAAGCTTTGATCTTGGCTCCCACAAGAGAG........4511.001.00----------------------1.00-------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCTTGGCTCCCACAAGAGAGTTGG....2811.001.00----------1.00-------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCACAAGAGAGTTGGC...1911.001.00--------1.00---------------------------------
............................................................................................................................................................................................................................................................................ATGCTGACACATTAACTAG.....................................................................................................................................................................................................................191.000.00-----------1.00------------------------------
....................................................................................ATTCTAGGAAATACTTACTC............................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------------------1.00-----------------------
............................................................................................................TTCTGTAACTACAGTGTTCAAAAAGT..............................................................................................................................................................................................................................................................................................................................................................................2611.001.00--------------------1.00---------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................AATACTGCGGATTCTCTATTT.......................................................................2111.001.00---------------------1.00--------------------
.AAAAACAGCCACCTTCAGTATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-----------------------1.00------------------
.AAAAACAGCCACCTTCAGTATCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00---------------1.00--------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGAAACTCAAGC.................................1711.001.001.00-----------------------------------------
........................................................................................................................................................................CAAATTTTTACACAG.............................................................................................................................................................................................................................................................................................................................1590.220.22-----------------------------------------0.22
..................................GTGTTTGGATATTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1570.140.14---0.14--------------------------------------

Antisense strand
GAAAAACAGCCACCTTCAGTATCTCAGTCCTCCAGTGTTTGGATATTCAGGTAATTTGCCATTCTTAAAACAAACTGTTATGTAATTCTAGGAAATACTTGCTTTTTCTTCTGTAACTACAGTGTTCAAAAAGTACAATTTAAAATTTTCTAGTATGTATTGACTCAGCAAATTTTTACACAGAGTCTTAGTTGTACACTAATATATGCACTAATATTCTGTCATGATTTTCTATTTAACTAGAGGAAGCTCTTGTCTGCAGACGAGGATGCTGACACATTAAGTTATTGTTGGATTTGCAATTTAAATGACAATATTTGCTAACCTGTAAGAGATGAGAAGTATGATTAATATGAGATAGTATTTCTCATATAGATCTGAGTGTGAATTACTACAATCCACTTTGATAATACTGCGGATTCTCTATTTTCTGATAAATTATTTCACCAGGTTCGTGAAACTCAAGCTTTGATCTTGGCTCCCACAAGAGAGTTGGCTGT
................................................................................................................................................................................................................................................................................................................................................(((((...((....((((((((.......))))))))..(((.(((((.((..........))))))).))).......))..)))))............................................................................
............................................................................................................................................................................................................................................................................................................................................333.............................................................................................429.....................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029128(GSM416757)
H520. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577743(Rovira)
total RNA. (breast)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343335
....................................................................................................................................................................................GTACAACTAAGACTCTG............................................................................................................................................................................................................................................................................................................... 1711.001.00----------1.00-------------------------------
...................................................................................................................................................................................................................................................................CAGACGAGGATGCTGACAGAAG........................................................................................................................................................................................................................... 221.000.00-----------1.00------------------------------
...................................................................................................................................................................................................................................................................CAGACGAGGATGCTGACAGGC............................................................................................................................................................................................................................ 211.000.00----------------------------1.00-------------
.........................AGTCCTCCAGTGTTTTTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-------------------------------------1.00----
.....................TCTCAGTCCTCCAGTAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00------------------------------1.00-----------
.....................................................................................................................................................................................................................................................................................................................GACAATATTTGCTAACGA............................................................................................................................................................................. 181.000.00--------------------------------1.00---------
....................................................................................................................................................................................................................................................................................................................................................................................................TTACTACAATCCACTAA............................................................................................... 171.000.00--------------1.00---------------------------
...................................................................................................................................................................................................................................................................CAGACGAGGATGCTGACATGGT........................................................................................................................................................................................................................... 221.000.00-------------------1.00----------------------
.................................................................................................................................................................................................................................................................................................................................................................................................GGATTGTAGTAATTC.................................................................................................... 1540.250.25----------------------------------------0.25-