ID: uc010wsz.1_intron_5_0_chr17_74277035_r.3p
GENE: (5)
chr17:74276985-74277234-


(2)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(8)
BREAST
(15)
CELL-LINE
(2)
CERVIX
(5)
HEART
(1)
LIVER
(2)
OTHER
(14)
SKIN
(1)
XRN.ip

Sense strand
CTGTTCTTGAACTCCTGGGCTCAAGTGATCCTCTCGCCTCACCTCAGCTTCCCAAAGTGCCAGGACTACAGGCATGAGCCACCGCTCCCAGCCTTGCAGATGTTTTAAGGGCCAACTTACCTGGGGCAGCAATATTATGGCAGCAGGGGGTGGGATCGCGCCAGCAGCCTCCGAGAGCCTTCCCATCCCTCCTGCCGCAGGACGAGGAGCTGCTGGGCCGTGTGCAGAGTGCCATCCTGCAGGTGCAGGG
........................................................((.(((((.((.(((((..((((....))))...))).)).))......((((......))))))))).))..........((((((..((((((((((..((.................))..)))))))))).)))))).....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM532874(GSM532874)
G699T. (cervix)
SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040022(GSM532907)
G575N. (cervix)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343337SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189783SRR189786
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCGCAGT.................................................23116.0016.00-4.003.00-3.00---------1.001.00-1.001.00-----------------1.00---------1.00----------
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCGCAG..................................................22116.0016.00-2.003.00--3.00--2.001.001.00-----------------1.00--------1.00---1.00-----------1.00---
.......TGAACTCCTGGGCTCAAGTGATCCCGCC.......................................................................................................................................................................................................................282.000.002.00--------------------------------------------------------
.....................................................AAAGTGCCAGGACTAAAG...................................................................................................................................................................................182.000.00------------1.00------------------1.00-------------------------
...................................................................................................................................................................................TTCCCATCCCTCCTGCCGCAGT.................................................2212.002.00------1.00------------------1.00-------------------------------
...................................................................................................................................................................................TTCCCATCCCTCCTGCCGCAG..................................................2112.002.00----------------1.00--1.00-------------------------------------
.........................................................................ATGAGCCACCGCTCCCAGCGG............................................................................................................................................................212.000.002.00--------------------------------------------------------
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCGCATT.................................................2311.001.00-1.00-------------------------------------------------------
..................................................................................................................................................GGGGTGGGATCGCGCGGCG.....................................................................................191.000.00--------------------------------------------------1.00------
..............................................GCTTCCCAAAGTGCCAGGAAC.......................................................................................................................................................................................211.000.00-------1.00-------------------------------------------------
.........................................................................................................................................TGGCAGCAGGGGGTGTGGG..............................................................................................191.000.001.00--------------------------------------------------------
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCGCAGAT................................................2411.0016.00--1.00------------------------------------------------------
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCG.....................................................1911.001.00------------------------------------------------1.00--------
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCGCA...................................................2111.001.00-------------------------------------------1.00-------------
..........................................................GCCAGGACTACAGGCATGAGCCACCATGA...................................................................................................................................................................291.000.00-----------------------------------------------1.00---------
.............................................................AGGACTACAGGCATGAGCCTCAG......................................................................................................................................................................231.000.00---1.00-----------------------------------------------------
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCGCAGTTT...............................................2511.0016.00---------------------------------------------------1.00-----
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCGCAGA.................................................2311.0016.00-------------1.00-------------------------------------------
.......................................................AGTGCCAGGACTACATG..................................................................................................................................................................................171.000.00------------------------------------------------------1.00--
...............................................................................................................................................................................................CTGCCGCAGGACGAGGC..........................................171.000.00------------------------------1.00--------------------------
.........................................................TGCCAGGACTACAGGCATGAGCCACG.......................................................................................................................................................................261.000.001.00--------------------------------------------------------
.....................................................................................................................................................GTGGGATCGCGCCAGTG....................................................................................171.000.00-----------1.00---------------------------------------------
.......................................................AGTGCCAGGACTACAGGCGGG..............................................................................................................................................................................211.000.00---1.00-----------------------------------------------------
......................................................................................................TTTTAAGGGCCAACTTAC..................................................................................................................................1811.001.00--------------------------------1.00------------------------
..........ACTCCTGGGCTCAAGTGATCCTCTCCCGC...................................................................................................................................................................................................................291.000.00---1.00-----------------------------------------------------
..................................................................................................................................................................................CTTCCCATCCCTCCTGCTGCA...................................................211.000.00------------------------1.00--------------------------------
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCGCC...................................................211.000.00---------------------------1.00-----------------------------
..................................................................................................................................................................................CTTCCCATCCCTCCTGCCGCCG..................................................221.000.00-----------------------------------1.00---------------------
........................................................................................................................................ATGGCAGCAGGGGGTGGGATCG............................................................................................2211.001.00----------------------1.00----------------------------------
.......................................................AGTGCCAGGACTACAGGCGAG..............................................................................................................................................................................211.000.001.00--------------------------------------------------------
......................................................AAGTGCCAGGACTACAGGCATGAACC..........................................................................................................................................................................261.000.001.00--------------------------------------------------------
.......................................................AGTGCCAGGACTACAGGCATGAGCCAC........................................................................................................................................................................2790.670.670.22--0.44-----------------------------------------------------
.......................................................AGTGCCAGGACTACAGGCATGAGCCACCG......................................................................................................................................................................2940.500.50---0.50-----------------------------------------------------
.......................AGTGATCCTCTCGCCTCAC................................................................................................................................................................................................................1930.330.33--------------------------------------------------------0.33
.......................................................AGTGCCAGGACTACAGGCATGAGCCACC.......................................................................................................................................................................2860.330.33---0.33-----------------------------------------------------
.......................................................AGTGCCAGGACTACAGGCATGAGCCACCGC.....................................................................................................................................................................3040.250.25---0.25-----------------------------------------------------
................................................................ACTACAGGCATGAGCCACCGCTCC..................................................................................................................................................................2460.170.17---0.17-----------------------------------------------------
.........................................................TGCCAGGACTACAGGCATGAGCCACC.......................................................................................................................................................................2670.140.14---0.14-----------------------------------------------------
......................................................AAGTGCCAGGACTACAGGCATGAGCCAC........................................................................................................................................................................2880.120.12---0.12-----------------------------------------------------
......................................................AAGTGCCAGGACTACAGGCATGAGCC..........................................................................................................................................................................2680.120.120.12--------------------------------------------------------
...........................................................CCAGGACTACAGGCATGAGCCACCG......................................................................................................................................................................2580.120.120.12--------------------------------------------------------

Antisense strand
CTGTTCTTGAACTCCTGGGCTCAAGTGATCCTCTCGCCTCACCTCAGCTTCCCAAAGTGCCAGGACTACAGGCATGAGCCACCGCTCCCAGCCTTGCAGATGTTTTAAGGGCCAACTTACCTGGGGCAGCAATATTATGGCAGCAGGGGGTGGGATCGCGCCAGCAGCCTCCGAGAGCCTTCCCATCCCTCCTGCCGCAGGACGAGGAGCTGCTGGGCCGTGTGCAGAGTGCCATCCTGCAGGTGCAGGG
........................................................((.(((((.((.(((((..((((....))))...))).)).))......((((......))))))))).))..........((((((..((((((((((..((.................))..)))))))))).)))))).....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM532874(GSM532874)
G699T. (cervix)
SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040022(GSM532907)
G575N. (cervix)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343337SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189783SRR189786
............TCCTGGGCTCAAGTGATCCTCTTCTC.................................................................................................................................................................................................................... 262.000.001.00--1.00-----------------------------------------------------
..GTTCTTGAACTCCTGGGCTCTG.................................................................................................................................................................................................................................. 222.000.00-------1.00-------------------------------------1.00-----------
..GTTCTTGAACTCCTGGGCTTCTG................................................................................................................................................................................................................................. 232.000.00---------1.00-------------1.00---------------------------------
..GTTCTTGAACTCCTGGTCTG.................................................................................................................................................................................................................................... 202.000.00----------------------------------1.00--------------1.00-------
..........ACTCCTGGGCTCAAGTGATCCTCTCCC..................................................................................................................................................................................................................... 271.000.00--------------------1.00------------------------------------
................................................................................................................................................................................................................................CTGCAGGATGGCACTCTG........ 1811.001.00---------------------------------------1.00-----------------
................................................................................................................................................................................CGGCAGGAGGGATGGGAAGGC..................................................... 2111.001.00--------------------------------------1.00------------------
...............................................................................................................................................................................AGCCTTCCCATCCCTCGGC........................................................ 191.000.00--------------------------1.00------------------------------
..................................................CCCAAAGTGCCAGGACCGCC.................................................................................................................................................................................... 201.000.00----------------------------------------1.00----------------
.....................................CTCACCTCAGCTTCCCAAATG................................................................................................................................................................................................ 211.000.00--------------------------------------------1.00------------
.................................................................CGGTGGCTCATGCCTGTAG...................................................................................................................................................................... 1901.001.00---------------------1.00-----------------------------------
..................................................CCCAAAGTGCCAGGACTACAGGCC................................................................................................................................................................................ 241.000.00----------------------------------------------------1.00----
............................................................................................................................................................................CTGCGGCAGGAGGGATGGGAAGGCTCTC.................................................. 2811.001.00---------------------------------1.00-----------------------
........................................................................................................................................................................................ATCCCTCCTGCCGCAAG................................................. 171.000.00-----------------------------1.00---------------------------
...............TGGGCTCAAGTGATCCTCTCGCCTCGAG............................................................................................................................................................................................................... 281.000.001.00--------------------------------------------------------
.............................................................AGGACTACAGGCATGAGCCCTG....................................................................................................................................................................... 221.000.00------------------------------------------1.00--------------
..........ACTCCTGGGCTCAAGTGATCCTCAGG...................................................................................................................................................................................................................... 261.000.00---1.00-----------------------------------------------------
.................................................TCCCAAAGTGCCAGGCTAT...................................................................................................................................................................................... 191.000.00------1.00--------------------------------------------------
..............................................................................................................................................................................................................................TGCAGAGTGCCATCCAC........... 170.330.00-------------------------------------------------------0.33-
..............................................................................................................................................................................................................................GGATGGCACTCTGCA............. 1560.170.17----------0.17----------------------------------------------