| (2) BRAIN | (1) BREAST | (8) CELL-LINE | (4) HEART | (2) HELA | (1) KIDNEY | (3) LIVER | (2) OTHER | (1) SKIN | (1) XRN.ip |
| CGAGCTGTGTGACCTCAGGCAGATTCTTAACCTCTCAGTTTCCCATTTGTAAAATGGAGATAGTAATAGTAACTACCTCACAGTGCCCTTAAGAGGACTAAATAAGTTAAAATACCAAGTGCTTAGATTAGAACCTGGCATATAGAAAGTTCTGTATAAACATTTACTTACTACTTTTTTTCTTTTTCTATGTCACGTAGTGAACCAGAACCACAGATTTTGGATTTTCAAACCCAGCAGTATAAACTCT .......................................................................................................................................(((((((.((((((....((((((........))).))).......)))))).)))))))....................................................... .............................................................................................................................126..................................................................195..................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR189785 | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR553575(SRX182781) source: Kidney. (Kidney) | GSM450609(GSM450609) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM450610(GSM450610) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR191595(GSM715705) 72genomic small RNA (size selected RNA from t. (breast) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................ACTACTTTTTTTCTTTTTTTTG........................................................... | 22 | 15.00 | 0.00 | 5.00 | 6.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TACTACTTTTTTTCTTTTTG.............................................................. | 20 | 7.00 | 0.00 | - | - | - | - | - | - | - | 4.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTTTTTA............................................................ | 21 | 3.00 | 0.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................ACTACTTTTTTTCTTGCTC.............................................................. | 19 | 3.00 | 0.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................TAGATTAGAACCTGGCATATAGAAAGTTCTGTATAAACATTTACTTACTACTTTTTTTCTTTTTCTATGTCACGTAG.................................................. | 77 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTTTCTTTG.......................................................... | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .GAGCTGTGTGACCTCAGGCAGATTC................................................................................................................................................................................................................................ | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTTTCTTAG.......................................................... | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................AGAACCACAGATTTTGGATTT....................... | 21 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTCTTA............................................................. | 20 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTTTCTTG........................................................... | 22 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TACTACTTTTTTTCTCCTG............................................................... | 19 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................GAACCTGGCATATAGAAAGTTCTG................................................................................................ | 24 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................TTACTACTTTTTTTCTTTTTAGAG........................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................CTTTTTTTCTTTTTCTACTT......................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................ACTACTTTTTTTCTTATTT.............................................................. | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TACTACTTTTTTTCTTTG................................................................ | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................TAAGAGGACTAAATAAGT............................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................CATTTACTTACTACTTTTTTTCTTTTTCTATG.......................................................... | 32 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTTTTCTG........................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................ACAGATTTTGGATTTTCAAACC................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..........................................................................................................................................................................CTACTTTTTTTCTTTTTCTTTTG......................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................AATACCAAGTGCTTAGATTA........................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TACTACTTTTTTTCTTCCTG.............................................................. | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................GATTTTGGATTTTCAAACCCAGAA........... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TACTTTTTTTCTTTTTCTCAG.......................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................TACTTACTACTTTTTTTCTTTTTG.............................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................CAGATTTTGGATTTTCAAACCCAGCAG.......... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTAG............................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TGCTTAGATTAGAACCTG................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TACTACTTTTTTTCTTTTTTTG............................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................AAATGGAGATAGTAATAGTAACTAC.............................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTTTCTATTAAT....................................................... | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TTCTTTTTCTATGTCACGTAG.................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTCG............................................................... | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................CAGATTTTGGATTTTCAAACCCAGCAGT......... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................ACATTTACTTACTACTTTTTTTCTTTCTAT............................................................. | 30 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .GAGCTGTGTGACCTCAGGCAGA................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTCTTG............................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TACTACTTTTTTTCTTTTTCTTAG.......................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................ATGTCACGTAGTGAACCAGAACCA..................................... | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................AACCCAGCAGTATAAACTC. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TACTACTTTTTTTCTTTCCTG............................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTGCTC............................................................. | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..AGCTGTGTGACCTCAGGCGATC.................................................................................................................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................AATGGAGATAGTAATAGTAACTA............................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................AAGTGCTTAGATTAGAACCTGGCAT............................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTTTTGCT........................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................GATTTTGGATTTTCAAACCCAGCAGTATA...... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................ACTACTTTTTTTCTTTCTG.............................................................. | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................ACTACTTTTTTTCTTCATG.............................................................. | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................TACTTACTACTTTTTTAG.................................................................... | 18 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................AAACCCAGCAGTATAAACT.. | 19 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TTTTGGATTTTCAAACC................ | 17 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - |
| ............................................................................................................................................TATAGAAAGTTCTGTA.............................................................................................. | 16 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | - | - |
| .............................................................................................................................GATTAGAACCTGGCA.............................................................................................................. | 15 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - |
| .GAGCTGTGTGACCTCAGGC...................................................................................................................................................................................................................................... | 19 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 |
| CGAGCTGTGTGACCTCAGGCAGATTCTTAACCTCTCAGTTTCCCATTTGTAAAATGGAGATAGTAATAGTAACTACCTCACAGTGCCCTTAAGAGGACTAAATAAGTTAAAATACCAAGTGCTTAGATTAGAACCTGGCATATAGAAAGTTCTGTATAAACATTTACTTACTACTTTTTTTCTTTTTCTATGTCACGTAGTGAACCAGAACCACAGATTTTGGATTTTCAAACCCAGCAGTATAAACTCT .......................................................................................................................................(((((((.((((((....((((((........))).))).......)))))).)))))))....................................................... .............................................................................................................................126..................................................................195..................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR189785 | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR553575(SRX182781) source: Kidney. (Kidney) | GSM450609(GSM450609) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM450610(GSM450610) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR191595(GSM715705) 72genomic small RNA (size selected RNA from t. (breast) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................................ACAGATTTTGGATTTAAGA................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....CTGTGTGACCTCAGGCAGATACGG.............................................................................................................................................................................................................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CTTACTACTTTTTTTCTTTGAA.............................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |