ID: uc010wrj.1_intron_10_0_chr17_72868259_r.3p
GENE: (1)
chr17:72868209-72868458-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(4)
AGO2.ip 		(1)
AGO3.ip 		(7)
B-CELL 		(5)
BRAIN 		(6)
BREAST 		(31)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(3)
HELA 		(3)
LIVER 		(3)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TCTGGATGAACCCACAGCCTTTGGGGGTTCAGATGAAGTAAGAGACCCTGCAAATGCCAAAGCCTTGAGGAACAAGAGAAGGAGGATGCAGGTGAGGGTGAAGCTTGGGAAGTTCCAGCTTCTGTTGGATATTCAGGTTGGTTTGGGACTGGGGAGAGAAGTTAATTTTGACCTTTTCCCTCTCCTCTGCCTGGCCCCAGGCTTCTGCCACCATTTCTCCACACAGGAGAAGACCCCCCAGATCTGTGTG
.............................................................(((.((((...(((.(((((..(((..(((((.........)))))......)))..))))).)))....)))))))........((((.........)))).......................................................................................
.............................................................62.........................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR038861(GSM458544)
MM466. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR343335SRR038863(GSM458546)
MM603. (cell line)		SRR343337SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038854(GSM458537)
MM653. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040011(GSM532896)
G529T. (cervix)
...............................................................................................................................................TGGGACTGGGGAGAGAAGTTAA.....................................................................................22122.0022.00-5.00-2.00------2.00-1.001.00-----1.00--1.001.00--1.00--1.00-2.00----------------1.00-1.00----1.00-----------------1.00----
..............................................................................................................................................TTGGGACTGGGGAGAGAAGTTAA.....................................................................................23118.0018.00--4.001.001.00---3.00---2.001.00--1.00-----1.00--1.00----1.00-------1.00--------1.00------------------------------
..............................................................................................................................................TTGGGACTGGGGAGAGAAGTT.......................................................................................21112.0012.00-1.00--1.00---1.00----1.00--------------1.00---------------1.00----1.00--------1.00----1.00----1.00-1.00-1.00-----
..............................................................................................................................................TTGGGACTGGGGAGAGAAGTTA......................................................................................2217.007.00---1.001.00-----------1.00--2.00-------------------------1.00-----------1.00--------------------
.............................................................................................................................................TTTGGGACTGGGGAGAGAAG.........................................................................................2017.007.004.00-1.00-1.00----------------------1.00--------------------------------------------------
..............................................................................................................................................TTGGGACTGGGGAGAGAAGT........................................................................................2016.006.003.00---2.00-----1.00-------------------------------------------------------------------
...............................................................................................................................................TGGGACTGGGGAGAGAAGTTA......................................................................................2116.006.00--------1.00----------------1.00--------1.00-----1.00----------------------------1.00------1.00-
.............................................................................................................................................TTTGGGACTGGGGAGAGAAGT........................................................................................2115.005.00--1.00----2.00----------------------------1.00------------------------1.00----------------
............................................................................................................................................GTTTGGGACTGGGGAGAGAAGT........................................................................................2215.005.00---1.001.00-----------------------------------------------1.00------1.00-----1.00------------
...............................................................................................................................................TGGGACTGGGGAGAGAAGTT.......................................................................................2015.005.00----------1.00-1.00---1.00-----------1.00-1.00-----------------------------------------------
.............................................................................................................................................TTTGGGACTGGGGAGAGAAT.........................................................................................204.000.00------4.00-----------------------------------------------------------------------
..............................................................................................................................................TTGGGACTGGGGAGAGAAGTTT......................................................................................2214.0012.00---------------3.00-----1.00--------------------------------------------------------
..............................................................................................................................................TTGGGACTGGGGAGAGAAGTTAAT....................................................................................2414.004.00-----------1.00-----1.00---------------------------------1.00----1.00---------------------
.............................................................................................................................................TTTGGGACTGGGGAGAGAAGTT.......................................................................................2213.003.002.00---------1.00-------------------------------------------------------------------
...............................................................................................................................................................................................................CCACCATTTCTCCACACAGGAG.....................2213.003.00------------------3.00-----------------------------------------------------------
..................................................................GAGGAACAAGAGAAGGAGGAT...................................................................................................................................................................2113.003.00-3.00----------------------------------------------------------------------------
..............................................................................................................................................TTGGGACTGGGGAGAGAAGTTAT.....................................................................................2313.007.00-----1.00--------------------1.00---------------------------------------1.00-----------
...................................................................AGGAACAAGAGAAGGAGGATG..................................................................................................................................................................2112.002.00-----2.00------------------------------------------------------------------------
.............................................................................................................................................TTTGGGACTGGGGAGAGAAGTTAAT....................................................................................2512.002.00---1.00-------------------------1.00------------------------------------------------
...................................................................................................................................................................................CTCTCCTCTGCCTGGCCCCAGT.................................................2212.001.00---------------------------------2.00--------------------------------------------
............................................................................................................................................GTTTGGGACTGGGGAGAGA...........................................................................................1912.002.00------2.00-----------------------------------------------------------------------
..............................................................................................................................................TTGGGACTGGGGAGAGAAT.........................................................................................1911.001.00-----------1.00------------------------------------------------------------------
.....................................................................................................................................................TGGGGAGAGAAGTTAATTTT.................................................................................2011.001.00-----------------1.00------------------------------------------------------------
............................................................................................TGAGGGTGAAGCTTGGGAGGGT........................................................................................................................................221.000.00-------------------------------------------------------------------1.00----------
............................................................................................................................................GTTTGGGACTGGGGAGAGAAT.........................................................................................2111.001.00-----1.00------------------------------------------------------------------------
............................................................................................TGAGGGTGAAGCTTGTTTT...........................................................................................................................................191.000.00--------------------------------1.00---------------------------------------------
...........................................................................................................................................................................................................................CACACAGGAGAAGACCCCC............1911.001.00-------1.00----------------------------------------------------------------------
...................................................................................................................................................................................CTCTCCTCTGCCTGGCCCCAGC.................................................2211.001.00--------------1.00---------------------------------------------------------------
..............................................................................................................................................TTGGGACTGGGGAGAGAAG.........................................................................................1911.001.00-----------1.00------------------------------------------------------------------
..............................................................................................................................................TTGGGACTGGGGAGAGAA..........................................................................................1811.001.00-------------1.00----------------------------------------------------------------
..........................................................................................................................................................................................................................CCACACAGGAGAAGAGAGC.............191.000.00-------------------------------------1.00----------------------------------------
............................................................................................TGAGGGTGAAGCTTGGGTAGT.........................................................................................................................................211.000.00------------------------------------------1.00-----------------------------------
...............................................................................................................................................TGGGACTGGGGAGAGAAGTAA......................................................................................2141.000.25-----------------------------------------1.00------------------------------------
.................CCTTTGGGGGTTCAGATAAAT....................................................................................................................................................................................................................211.000.00------------------------------------------------------------1.00-----------------
.............................................................................................................................................TTTGGGACTGGGGAGAGAAGTTA......................................................................................2311.001.00--1.00---------------------------------------------------------------------------
...................................................................................................................................................................................CTCTCCTCTGCCTGGCCCCAG..................................................2111.001.00-------1.00----------------------------------------------------------------------
............................................................................................................................TTGGATATTCAGGTTCGT............................................................................................................181.000.00-----------------------------------------------------------------------1.00------
............................................................................................................................................GTTTGGGACTGGGGAGAGAAG.........................................................................................2111.001.00-----1.00------------------------------------------------------------------------
..................................................................................................................................................................................................................................GAGAAGACCCCCCAGATCT.....1911.001.00--------------------------------------------------------------1.00---------------
............................................................................................................................................GTTTGGGACTGGGGAGAGAAGTAA......................................................................................2411.005.00---1.00--------------------------------------------------------------------------
.............................................................................................................................................TTTGGGACTGGGGAGAGAAGA........................................................................................2111.007.00---------------------1.00--------------------------------------------------------
..............................................................................................................................................TTGGGACTGGGGAGAGAAGTTAAA....................................................................................2411.0018.00--1.00---------------------------------------------------------------------------
.............................................................................................................................................................................TTTTCCCTCTCCTCTGCCCCAC.......................................................221.000.00----------------------------------------------------------------1.00-------------
............................................................................................................................................GTTTGGGACTGGGGAGAGAAGA........................................................................................2211.001.00-----------------1.00------------------------------------------------------------
..................................................................................AGGATGCAGGTGAGGCTT......................................................................................................................................................181.000.00---------------------------------------1.00--------------------------------------
.................................................................................................................................TATTCAGGTTGGTTTGGGACTGGGA................................................................................................251.000.00---------------------------------------------------------------------------1.00--
...............................................................................................................................................TGGGACTGGGGAGAGAAGTTAAT....................................................................................2311.001.00-----------1.00------------------------------------------------------------------
............................................................................................................................................GTTTGGGACTGGGGAGAGAA..........................................................................................2011.001.00---------------------------1.00--------------------------------------------------
...............................................................................................................................................TGGGACTGGGGAGAGAAG.........................................................................................1860.670.67--0.17--------0.17---------0.17-------------------------------------------------------0.17
...............................................................................................................................................TGGGACTGGGGAGAGAAGAA.......................................................................................2060.330.67---------------------0.33--------------------------------------------------------
...............................................................................................................................................TGGGACTGGGGAGAGAAGT........................................................................................1940.250.25----------------------0.25-------------------------------------------------------
...............................................................................................................................................TGGGACTGGGGAGAGAAGGT.......................................................................................2060.170.67----------------------------------0.17-------------------------------------------

Antisense strand
TCTGGATGAACCCACAGCCTTTGGGGGTTCAGATGAAGTAAGAGACCCTGCAAATGCCAAAGCCTTGAGGAACAAGAGAAGGAGGATGCAGGTGAGGGTGAAGCTTGGGAAGTTCCAGCTTCTGTTGGATATTCAGGTTGGTTTGGGACTGGGGAGAGAAGTTAATTTTGACCTTTTCCCTCTCCTCTGCCTGGCCCCAGGCTTCTGCCACCATTTCTCCACACAGGAGAAGACCCCCCAGATCTGTGTG
.............................................................(((.((((...(((.(((((..(((..(((((.........)))))......)))..))))).)))....)))))))........((((.........)))).......................................................................................
.............................................................62.........................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR038861(GSM458544)
MM466. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR343335SRR038863(GSM458546)
MM603. (cell line)		SRR343337SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038854(GSM458537)
MM653. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040011(GSM532896)
G529T. (cervix)
.....................................................................................................................................................................TTTTGACCTTTTCCCGACA.................................................................. 195.000.00---------5.00--------------------------------------------------------------------
.......GAACCCACAGCCTTTGGGG................................................................................................................................................................................................................................ 193.000.00--------------------3.00---------------------------------------------------------
.........................................................CAAAGCCTTGAGGAACAATGG............................................................................................................................................................................ 212.000.00------------------------2.00-----------------------------------------------------
.......GAACCCACAGCCTTTCGG................................................................................................................................................................................................................................. 181.000.00-------1.00----------------------------------------------------------------------
...............................................................................................................GTTCCAGCTTCTGTTAATG........................................................................................................................ 191.000.00-----1.00------------------------------------------------------------------------
......................................................................................TGCAGGTGAGGGTGAAGCTG................................................................................................................................................ 201.000.00--------------1.00---------------------------------------------------------------
............................................................................................................................................................................................GCCTGGCCCCAGGCTTGTGG.......................................... 201.000.00-----------------------------------1.00------------------------------------------
..................................................................................................................................................................................CCTCTCCTCTGCCTGGCGGC.................................................... 201.000.00----------------------------------------------1.00-------------------------------
.........ACCCACAGCCTTTGGAGGG.............................................................................................................................................................................................................................. 191.000.00-----------------------------------------------------1.00------------------------
.......GAACCCACAGCCTTTGG.................................................................................................................................................................................................................................. 171.000.00--------------1.00---------------------------------------------------------------
.................................................................................................................TCCAGCTTCTGTTGGGAT....................................................................................................................... 181.000.00-------------------------------------------1.00----------------------------------
...............................................................................................................................................................................TTCCCTCTCCTCTGCCGT......................................................... 181.000.00--------------------------------1.00---------------------------------------------
....................................................................................................................................................................................................................................GAAGACCCCCCAGATCCGG... 191.000.00------------------------------------------------------1.00-----------------------
...............................................................................................................GTTCCAGCTTCTGTTGACA........................................................................................................................ 191.000.00--------------------------------------------------------------------------1.00---
..............................................................................................................................................................................TTTCCCTCTCCTCTGCCCAA........................................................ 201.000.00-----------------------1.00------------------------------------------------------