ID: uc010wjb.1_intron_5_0_chr17_42811532_f.5p
GENE: DBF4B(6)
chr17:42811482-42811731+


(1)
AGO2.ip
(1)
BRAIN
(4)
BREAST
(8)
CELL-LINE
(3)
CERVIX
(2)
HEART
(2)
LIVER
(1)
OTHER
(4)
SKIN

Sense strand
TGTCTCTTGCGTCTTTATGTGTGAAAAAACAACAGCCAAAGAAGCCAGAGGTAGGTCATCCTGCTGAACTGAAGGACAAATGGATGGTTTTCAATGAAATCAGTGACAACTTAGGTAAATCCATGGCCCACCCAAACCATCTCTTCCTGGCCATTCTGAAAGATGGAAGAGGAATGCAGCCTCTTATTTACCTCAGTCCTAGTGCCCATAGCTTTGCAACACCCTTTCTTCTCTCTTCTCTGTGGCACTT
........................................................................(((((........((((.(((.((....)).))).)))).((((((((...(((.....)))..((((((.(((..((....)).))))))))).(((((.......))))).))))))))..)))))..................................................
................................................................65.....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM532878(GSM532878)
G691T. (cervix)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR040033(GSM532918)
G603T. (cervix)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................TGAAGGACAAATGGATC....................................................................................................................................................................17149.000.00149.00------------------------
....................................................................CTGAAGGACAAATGGATC....................................................................................................................................................................182.000.002.00------------------------
................................................................................................................................CACCCAAACCATCTCA..........................................................................................................161.000.00------------------1.00------
.......................................................................................................................................................................................TTATTTACCTCAGTCCTA.................................................1811.001.00---------------------1.00---
..................................................................................................................................................................ATGGAAGAGGAATGCAGCC.....................................................................1911.001.00---1.00---------------------
...........................................GCCAGAGGTAGGTCATCAGA...........................................................................................................................................................................................201.000.00--1.00----------------------
....................................................................CTGAAGGACAAATGGATGGTTTT...............................................................................................................................................................2311.001.00------1.00------------------
................................................................................................................................................................................................................................TTTCTTCTCTCTTCTCTCGTG.....211.000.00-------------------1.00-----
.................................................................GAACTGAAGGACAAATGGATGGT..................................................................................................................................................................2311.001.00----------------------1.00--
................................................................................................................................................................................................................................TTTCTTCTCTCTTCTCGC........181.000.00-----------------1.00-------
.........................................................................................................................................................................................................................AACACCCTTTCTTCTGG................171.000.00--------------1.00----------

Antisense strand
TGTCTCTTGCGTCTTTATGTGTGAAAAAACAACAGCCAAAGAAGCCAGAGGTAGGTCATCCTGCTGAACTGAAGGACAAATGGATGGTTTTCAATGAAATCAGTGACAACTTAGGTAAATCCATGGCCCACCCAAACCATCTCTTCCTGGCCATTCTGAAAGATGGAAGAGGAATGCAGCCTCTTATTTACCTCAGTCCTAGTGCCCATAGCTTTGCAACACCCTTTCTTCTCTCTTCTCTGTGGCACTT
........................................................................(((((........((((.(((.((....)).))).)))).((((((((...(((.....)))..((((((.(((..((....)).))))))))).(((((.......))))).))))))))..)))))..................................................
................................................................65.....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM532878(GSM532878)
G691T. (cervix)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR040033(GSM532918)
G603T. (cervix)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................TCCTGCTGAACTGAAACAG............................................................................................................................................................................. 196.000.00-3.00--1.00-------1.00---1.00--------
.........................................................ATCCTGCTGAACTGACAGT.............................................................................................................................................................................. 191.000.00---------1.00---------------
..................................................................................................................................CCCAAACCATCTCTTCCTAC.................................................................................................... 201.000.00--------1.00----------------
..........................................................TCCTGCTGAACTGAAACAA............................................................................................................................................................................. 191.000.00-------1.00-----------------
.........................................................ATCCTGCTGAACTGACCG............................................................................................................................................................................... 181.000.00-----1.00-------------------
...............TATGTGTGAAAAAACCGAG........................................................................................................................................................................................................................ 191.000.00---1.00---------------------
.........................AAAACAACAGCCAAAGAG............................................................................................................................................................................................................... 181.000.00--1.00----------------------
.........................................................ATCCTGCTGAACTGACATT.............................................................................................................................................................................. 191.000.00--------------------1.00----
...........................................................................................................................................TCTCTTCCTGGCCATTCAGAC.......................................................................................... 211.000.00-------------1.00-----------
..........................................................TCCTGCTGAACTGAAACA.............................................................................................................................................................................. 181.000.00----------1.00--------------
.................................................................................................................................ACCCAAACCATCTCTTT........................................................................................................ 171.000.00---------------1.00---------
.................................................................................................................................ACCCAAACCATCTCTTTCT...................................................................................................... 191.000.00-----------1.00-------------
...........................................................................................................................................AATGGCCAGGAAGAGA............................................................................................... 1650.200.20------------------------0.20
...........................................................................................................................................TCTCTTCCTGGCCATTAGA............................................................................................ 190.200.00-----------------------0.20-