ID: uc010whl.1_intron_12_0_chr17_41243050_r.5p
GENE: (9)
chr17:41246561-41246810-


(1)
AGO2.ip 		(7)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
OTHER.ip 		(4)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
GAACACCACTGAGAAGCGTGCAGCTGAGAGGCATCCAGAAAAGTATCAGGGTAGTTCTGTTTCAAACTTGCATGTGGAGCCATGTGGCACAAATACTCATGCCAGCTCATTACAGCATGAGAACAGCAGTTTATTACTCACTAAAGACAGAATGAATGTAGAAAAGGCTGAATTCTGTAATAAAAGCAAACAGCCTGGCTTAGCAAGGAGCCAACATAACAGATGGGCTGGAAGTAAGGAAACATGTAAT
................................................................................................................((((.........(((.((((((..((......))...))))))))).......))))................................................................................
...............................................................................................................112...........................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR189784SRR029128(GSM416757)
H520. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189785SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		TAX577746(Rovira)
total RNA. (breast)		GSM532883(GSM532883)
G871N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR189786SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.................................................................................................................................TTTATTACTCACTAAAGACAGAATGAATGTAG.........................................................................................321125.00125.0067.0053.003.00---2.00----------------------------------
..................................................................................................................................TTATTACTCACTAAAGACAGAATGAATGTAG.........................................................................................31162.0062.0039.0020.002.00---1.00----------------------------------
...................................................................................................................................TATTACTCACTAAAGACAGAATGAATGTAG.........................................................................................30129.0029.0017.0010.002.00--------------------------------------
.................................................................................................................................TTTATTACTCACTAAAGACAGAATGAATGTA..........................................................................................31113.0013.0013.00----------------------------------------
...............................................................................................................ACAGCATGAGAACAGCAGTTTATTAC.................................................................................................................2618.008.00---8.00-------------------------------------
..................................................................................................................................TTATTACTCACTAAAGACAGAATGAATGTA..........................................................................................3018.008.008.00----------------------------------------
.................................................................................................................................TTTATTACTCACTAAAGACAGAATGAATGTAA.........................................................................................3216.0013.006.00----------------------------------------
....................................................................................................................ATGAGAACAGCAGTTGAA....................................................................................................................185.000.00---------------1.00--1.00-----------1.00----1.00--1.00--
.....................................................................................................................................TTACTCACTAAAGACAGAATGAATGTAG.........................................................................................2814.004.002.002.00---------------------------------------
..........................................................................................................................................CACTAAAGACAGAATGAATGTAG.........................................................................................2314.004.004.00----------------------------------------
....................................................................................................................................ATTACTCACTAAAGACAGAATGAATGTAG.........................................................................................2913.003.002.00-1.00--------------------------------------
...................................................................................................................CATGAGAACAGCAGTTGGTC...................................................................................................................203.000.00-------2.00-----------1.00---------------------
.............................................................................................................................................TAAAGACAGAATGAATGTAGAAAAGGC..................................................................................2713.003.00-----3.00-----------------------------------
.......................................................................................................................................................ATGAATGTAGAAAAGGCTG................................................................................1913.003.00----1.00--1.00----------------------------1.00----
....................................................................................................................................ATTACTCACTAAAGACAGAATGAATGTA..........................................................................................2813.003.003.00----------------------------------------
.........................................................................................................................................TCACTAAAGACAGAATGAATGTAG.........................................................................................2413.003.003.00----------------------------------------
.......................................................................................................................................ACTCACTAAAGACAGAATGAATGTAGAAAAGGCTG................................................................................3512.002.00--------2.00--------------------------------
.................................................................................................................................................................AAAAGGCTGAATTCTGTA.......................................................................1812.002.00---------2.00-------------------------------
............................................................................................................................................CTAAAGACAGAATGAATGTAG.........................................................................................2112.002.002.00----------------------------------------
...................................................................................................................................................CAGAATGAATGTAGAAAA.....................................................................................1812.002.00----2.00------------------------------------
....................................................................................................................ATGAGAACAGCAGTTGAAC...................................................................................................................192.000.00---------------1.00-1.00-----------------------
..........................................................................................................................................................................................................................ACAGATGGGCTGGAAGTAAGGA..........2211.001.00-----------------------------1.00-----------
..................................................GTAGTTCTGTTTCAAACTTGCATGTGGAGC..........................................................................................................................................................................3011.001.00-----1.00-----------------------------------
...............................................................................................................................................................AGAAAAGGCTGAATTCTGTAA......................................................................2111.001.00----1.00------------------------------------
.........................................................................................................................................................................................................................AACAGATGGGCTGGAAGTAAGGA..........2311.001.00-----------1.00-----------------------------
..............................................................................................................................................................TAGAAAAGGCTGAATTCTG.........................................................................1911.001.00--------------------------------1.00--------
..............................................................................................................................................................TAGAAAAGGCTGAATTCTGTAATAAAAGC...............................................................2911.001.00-----1.00-----------------------------------
.....................................................................................................................................................GAATGAATGTAGAAAAGG...................................................................................1811.001.00----1.00------------------------------------
........................................................................................................................................................TGAATGTAGAAAAGGCTGAATTCTGTAA......................................................................2811.001.00-----1.00-----------------------------------
.........................................................................................CAAATACTCATGCCAGCTCA.............................................................................................................................................2011.001.00----------------------------1.00------------
........................................................................................................................................................TGAATGTAGAAAAGGCTGA...............................................................................1911.001.00-------1.00---------------------------------
...............................................................................................................................................................................................................................TGGGCTGGAAGTAAGTGTA........191.000.00-------------------------1.00---------------
.......................................................................................................................................ACTCACTAAAGACAGAATGAATGTAGAAAAGGC..................................................................................3311.001.00---------1.00-------------------------------
...............................................................................................................................................AAGACAGAATGAATGTAGAAAAGG...................................................................................2411.001.00-------------1.00---------------------------
.................................................................................................................................TTTATTACTCACTAAAGACAGAATGAATGCAG.........................................................................................321.000.00-1.00---------------------------------------
.................................................................................................................................................GACAGAATGAATGTAG.........................................................................................1631.001.00-1.00---------------------------------------
....................................................................................................................................ATTACTCACTAAAGACAGAATGAATGTAGA........................................................................................3011.001.00---------------------------------1.00-------
................................................................................................................................................AGACAGAATGAATGTAGAAAAGGCT.................................................................................2511.001.00---------------------------1.00-------------
..................................................................................................................................TTATTACTCACTAAATCT......................................................................................................181.000.00--------------1.00--------------------------
.................................................................................................................................TTTATTACTCACTAAAGACAG....................................................................................................2111.001.001.00----------------------------------------
.................................................................................................................................TTTATTACTCACTAAAG........................................................................................................1711.001.001.00----------------------------------------
............................................................................................................................................................TGTAGAAAAGGCTGAAAAA...........................................................................191.000.00------------1.00----------------------------
..............................................................................................................................................AAAGACAGAATGAATGTAG.........................................................................................1911.001.001.00----------------------------------------
.............................................................................................................................................................GTAGAAAAGGCTGAATTCTGTAAT.....................................................................2411.001.00----------------------1.00------------------
.......................................................................................................................................................ATGAATGTAGAAAAGGCT.................................................................................1811.001.00----1.00------------------------------------
.................................................................................................................................................................AAAAGGCTGAATTCTGTAATAAA..................................................................2311.001.00-----------1.00-----------------------------
...............................................................................................................................................................AGAAAAGGCTGAATTCTAA........................................................................191.000.00------------1.00----------------------------
...................................................................................................................CATGAGAACAGCAGTTGA.....................................................................................................................181.000.00----------------1.00------------------------
.........TGAGAAGCGTGCAGCTGAGAGGCACCC......................................................................................................................................................................................................................271.000.00------1.00----------------------------------
..........................................................................................................................................................................................................................ACAGATGGGCTGGAAGTAAGGAAACACGT...291.000.00------1.00----------------------------------
....................................................................................................................................................AGAATGAATGTAGAAAAGGCTG................................................................................2211.001.00----------1.00------------------------------
.............................................................................................................................................................................................................................GATGGGCTGGAAGTAAGGAAACATGTA..2711.001.00-----------------------1.00-----------------
............................................................................................................................................CTAAAGACAGAATGAATGTAGAAAAGGC..................................................................................2811.001.00--------1.00--------------------------------
.....................................................................................................................................................................................................................................GGAAGTAAGGAAACATGTAA.2011.001.00----1.00------------------------------------
..................................................................................................................................TTATTACTCACTAAAGACAGA...................................................................................................2111.001.001.00----------------------------------------
...............................................................................................................................................AAGACAGAATGAATGTAG.........................................................................................1811.001.001.00----------------------------------------
....ACCACTGAGAAGCGTGCAG...................................................................................................................................................................................................................................1911.001.00---------------------1.00-------------------
............................................................................................................................................CTAAAGACAGAATGAATGTAGAAAAGGCTGAAT.............................................................................3311.001.00-------------------------------------1.00---
.........................................................................................................................................................................................................................AACAGATGGGCTGGAAGTAAGGAAAC.......2611.001.00-------------1.00---------------------------
.......................................................................................................................................................ATGAATGTAGAAAAGGCTGA...............................................................................2011.001.00----------1.00------------------------------
............................................................................................................................................................................................................................AGATGGGCTGGAAGTAAGGA..........2011.001.00-----------1.00-----------------------------
..............................................................................................................................................................TAGAAAAGGCTGAATTCTGTAATAA...................................................................2511.001.00-------------------------------1.00---------
.......ACTGAGAAGCGTGCAGCTGAGAGGCATC.......................................................................................................................................................................................................................2811.001.00------------------------1.00----------------
.....................................................................................................................................................GAATGAATGTAGAAAAGGT..................................................................................1911.001.00----------1.00------------------------------
...............................................................................................................................................AAGACAGAATGAATGTAGAAAAGGCT.................................................................................2611.001.00-----1.00-----------------------------------
...........................................................................................................................................................ATGTAGAAAAGGCTGAAT.............................................................................1820.500.50---------------------------------------0.50-
...........................................................................................................................................................ATGTAGAAAAGGCTGAATT............................................................................1920.500.50----------------------------------------0.50
...............................................................................................................................................................................................................................TGGGCTGGAAGTAAGGAA.........1820.500.50----0.50------------------------------------

Antisense strand
GAACACCACTGAGAAGCGTGCAGCTGAGAGGCATCCAGAAAAGTATCAGGGTAGTTCTGTTTCAAACTTGCATGTGGAGCCATGTGGCACAAATACTCATGCCAGCTCATTACAGCATGAGAACAGCAGTTTATTACTCACTAAAGACAGAATGAATGTAGAAAAGGCTGAATTCTGTAATAAAAGCAAACAGCCTGGCTTAGCAAGGAGCCAACATAACAGATGGGCTGGAAGTAAGGAAACATGTAAT
................................................................................................................((((.........(((.((((((..((......))...))))))))).......))))................................................................................
...............................................................................................................112...........................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR189784SRR029128(GSM416757)
H520. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189785SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		TAX577746(Rovira)
total RNA. (breast)		GSM532883(GSM532883)
G871N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR189786SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
....................................................................................................................................................AGAATGAATGTAGAAAATC................................................................................... 191.000.00--------------------------1.00--------------
....................................................................................................................................................AGAATGAATGTAGAATCTG................................................................................... 191.000.00--------------1.00--------------------------
..ACACCACTGAGAAGCGAT...................................................................................................................................................................................................................................... 181.000.00--------------------1.00--------------------
..........................................................GTTTCAAACTTGCATGTCTG............................................................................................................................................................................ 201.000.00----------------------------------1.00------
......................................................................................................................GAGAACAGCAGTTTAGCAC................................................................................................................. 191.000.00------1.00----------------------------------
...................GCAGCTGAGAGGCATCCAGAT.................................................................................................................................................................................................................. 211.000.00----------------1.00------------------------