ID: uc010wef.1_intron_1_0_chr17_37628017_f.3p
GENE: CDK12(2)
chr17:37646610-37646859+


(1)
BRAIN
(2)
BREAST
(8)
CELL-LINE
(2)
CERVIX
(3)
LIVER
(3)
OTHER
(3)
SKIN
(1)
TESTES

Sense strand
ACTCTGTCTCAAAAAAAAAAGAAAAAAATTAAGTATCTTTAGTTGTGATTAATTATTTTTTTTTATGTTATAGTACAGGTTTTTTTCCTTAAAAATTAGATCTTTCTAACCTTTTCGTAACCAGGCATTATGATCTTTGAAAATTTTTATTTGCGTATCTTTAATTGTAATTTTGTCATCTCTTCTCATTTATTGTTTAGTCCAAAAGAAACTCTTCCTTCAAAACCTGTGAAGAAAGAGAAGGAACAGA
..................................................((((((..((...(((((...((((.((((((((...........(((((....))))).....((((((.......)))))).....)))))))).)))).))))).....))..))))))..............................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189783SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM532876(GSM532876)
G547T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM532885(GSM532885)
G850N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................AATTATTTTTTTTTATACA.....................................................................................................................................................................................1921.000.0021.00----------------------
..................................................AATTATTTTTTTTTACATA.....................................................................................................................................................................................1919.000.0019.00----------------------
..................................................AATTATTTTTTTTTACACA.....................................................................................................................................................................................192.000.002.00----------------------
...................................................................................................................................................................................................................................TGTGAAGAAAGAGAAGGAACA..2112.002.00------1.00--1.00-------------
................................................................................................................................................................................................................AAACTCTTCCTTCAAAACCTGTGAAG................2612.002.00----------2.00------------
...................................................................................................................................................................................CTCTTCTCATTTATTTTC.....................................................182.000.00---1.00----1.00--------------
...................................................................................................................................................................................................................................TGTGAAGAAAGAGAAGGAACAG.2212.002.00---------1.00--------1.00----
.........................................................................................................................................................................................................CCAAAAGAAACTCTTCCTTCATA..........................231.000.00------1.00----------------
...............................................................................................................................................................................................................GAAACTCTTCCTTCAAAACC.......................2011.001.00-------------1.00---------
...................................................................................................................................................................................................................................TGTGAAGAAAGAGAAGGAACAGA2311.001.00------1.00----------------
.....................................................TATTTTTTTTTATGTTATCA.................................................................................................................................................................................201.000.00---1.00-------------------
................................................................................................................................................................................................................................ACCTGTGAAGAAAGAGAAGG......2011.001.00---------------1.00-------
...................................................................................................................................................................................................................................TGTGAAGAAAGAGAAGGTCTT..211.000.00-------1.00---------------
..............................................................................................................................................................................................................................AAACCTGTGAAGAAAGAGAA........2011.001.00------1.00----------------
.................................................TAATTATTTTTTTTTATGTCT....................................................................................................................................................................................211.000.001.00----------------------
..............................................................................................................................................................................................................................AAACCTGTGAAGAAAGAGAAG.......2111.001.00-------------------1.00---
...........................................................................................................................................................................................................................TCAAAACCTGTGAAGAAAGAGAAGGA.....2611.001.00-----------------1.00-----
.................................................TAATTATTTTTTTTTATTTG.....................................................................................................................................................................................201.000.00-----1.00-----------------
.................................................................................................................................................................................ATCTCTTCTCATTTATCAG......................................................191.000.00-------1.00---------------
................................................TTAATTATTTTTTTTTATTTAA....................................................................................................................................................................................221.000.00---1.00-------------------
..................................................................................................................................................................................TCTCTTCTCATTTATTTTC.....................................................191.000.00---1.00-------------------
.............................................................................................................................................................................................................................AAAACCTGTGAAGAACATC..........191.000.00------1.00----------------
.................................................................................................................................................................................................................................CCTGTGAAGAAAGAGAAGG......1911.001.00-----------1.00-----------
........................................................................................................................................................................................................TCCAAAAGAAACTCTTCCT...............................1911.001.00--------------1.00--------
...................................................................................................................................................................ATTGTAATTTTGTCATGTCT...................................................................201.000.00----------------1.00------
................................................................................................................................................................................................................AAACTCTTCCTTCAAAACCCG.....................211.000.00------------1.00----------
...................................................................................................................................................................................................................................TGTGAAGAAAGAGAAGGAA....1920.500.50---------0.50-------------
...................................................................................................................................................................................................................................TGTGAAGAAAGAGAAGGA.....1820.500.50------0.50----------------
........................................................................................................................................................................................................................................AGAAAGAGAAGGAACAGA1880.250.25---------------------0.25-
......................................................................................................................................................................................................................................GAAGAAAGAGAAGGAAC...1770.140.14----------------------0.14

Antisense strand
ACTCTGTCTCAAAAAAAAAAGAAAAAAATTAAGTATCTTTAGTTGTGATTAATTATTTTTTTTTATGTTATAGTACAGGTTTTTTTCCTTAAAAATTAGATCTTTCTAACCTTTTCGTAACCAGGCATTATGATCTTTGAAAATTTTTATTTGCGTATCTTTAATTGTAATTTTGTCATCTCTTCTCATTTATTGTTTAGTCCAAAAGAAACTCTTCCTTCAAAACCTGTGAAGAAAGAGAAGGAACAGA
..................................................((((((..((...(((((...((((.((((((((...........(((((....))))).....((((((.......)))))).....)))))))).)))).))))).....))..))))))..............................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189783SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM532876(GSM532876)
G547T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM532885(GSM532885)
G850N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........AAAAAAAAAAGAAAAAAATTAAGTTTG..................................................................................................................................................................................................................... 276.000.00-1.00-3.002.00------------------
...........AAAAAAAAAGAAAAAAATTAAGTATG..................................................................................................................................................................................................................... 266.000.00---4.002.00------------------
..........AAAAAAAAAAGAAAAAAATTAAGTTTTG.................................................................................................................................................................................................................... 285.000.00---4.00-1.00-----------------
..........AAAAAAAAAAGAAAAAAATTAAGTATAG.................................................................................................................................................................................................................... 283.000.00---1.00-1.00--1.00--------------
.........CAAAAAAAAAAGAAAAAAACAGG.......................................................................................................................................................................................................................... 233.000.00--3.00--------------------
.......CTCAAAAAAAAAAGAAAAAAATTTGG......................................................................................................................................................................................................................... 263.000.00-3.00---------------------
.......CTCAAAAAAAAAAGAAAAAAATTTG.......................................................................................................................................................................................................................... 253.000.00-1.002.00--------------------
.........ACTTAATTTTTTTCTTTTTTTTTTG........................................................................................................................................................................................................................ 2513.003.00-1.00-1.00-1.00-----------------
.TTAATTTTTTTCTTTTTTTTTTGAGACAGAG.......................................................................................................................................................................................................................... 3112.002.00--2.00--------------------
.........CAAAAAAAAAAGAAAAAAATGTAG......................................................................................................................................................................................................................... 242.000.00--2.00--------------------
.........CAAAAAAAAAAGAAAAAAATTTTT......................................................................................................................................................................................................................... 242.000.001.00-1.00--------------------
.........CAAAAAAAAAAGAAAAAAACTTG.......................................................................................................................................................................................................................... 232.000.001.00-1.00--------------------
................AAAAGAAAAAAATTAAGTCGAG.................................................................................................................................................................................................................... 222.000.00-2.00---------------------
..........AAAAAAAAAAGAAAAAAATTAAGTTG...................................................................................................................................................................................................................... 262.000.00---2.00-------------------
.......CTCAAAAAAAAAAGAAAAAAACCGG.......................................................................................................................................................................................................................... 252.000.00-1.001.00--------------------
.........CAAAAAAAAAAGAAAAAAATGTT.......................................................................................................................................................................................................................... 232.000.00-2.00---------------------
.........ATACTTAATTTTTTTCTTTTTTTTTTG...................................................................................................................................................................................................................... 2712.002.00-2.00---------------------
.........CAAAAAAAAAAGAAAAAAATGCAG......................................................................................................................................................................................................................... 242.000.00--2.00--------------------
.........CAAAAAAAAAAGAAAAAAAGGC........................................................................................................................................................................................................................... 222.000.00-2.00---------------------
.........CAAAAAAAAAAGAAAAAAACAGT.......................................................................................................................................................................................................................... 231.000.00-1.00---------------------
.........CAAAAAAAAAAGAAAAAAATGGG.......................................................................................................................................................................................................................... 231.000.00--1.00--------------------
...........AAAAAAAAAGAAAAAAATTAAGTAG...................................................................................................................................................................................................................... 251.000.00--------1.00--------------
.......ACTTAATTTTTTTCTTTTTTTTTTGAG........................................................................................................................................................................................................................ 2711.001.00-1.00---------------------
.........CAAAAAAAAAAGAAAAAAATGCT.......................................................................................................................................................................................................................... 231.000.00-1.00---------------------
.................................................................................................................................................................TAATTGTAATTTTGTTTTT...................................................................... 191.000.00-------1.00---------------
....TGTCTCAAAAAAAAAAGAAAAAATAAG........................................................................................................................................................................................................................... 271.000.001.00----------------------
.........TACTTAATTTTTTTCTTTTTTTTTTG....................................................................................................................................................................................................................... 2611.001.00---1.00-------------------
.CTCTGTCTCAAAAAAAAAAGAAAAACG.............................................................................................................................................................................................................................. 271.000.001.00----------------------
.........CAAAAAAAAAAGAAAAAAAGCG........................................................................................................................................................................................................................... 221.000.00-1.00---------------------
.........CAAAAAAAAAAGAAAAAAATCAG.......................................................................................................................................................................................................................... 231.000.00-1.00---------------------
.......CTCAAAAAAAAAAGAAAAAAACCG........................................................................................................................................................................................................................... 241.000.00-1.00---------------------
..TCTGTCTCAAAAAAAAAAGAAAAAAATTA........................................................................................................................................................................................................................... 291.000.00--1.00--------------------
.........CAAAAAAAAAAGAAAAAAACTCC.......................................................................................................................................................................................................................... 231.000.00--1.00--------------------
...........AAAAAAAAAGAAAAAAATTGCTG........................................................................................................................................................................................................................ 231.000.00-1.00---------------------
............AAAAAAAAGAAAAAAATTAACTTC...................................................................................................................................................................................................................... 241.000.00---1.00-------------------
..........AAAAAAAAAAGAAAAAAATTAAGTATTG.................................................................................................................................................................................................................... 281.000.00---1.00-------------------
.....GTCTCAAAAAAAAAAGAAAAAAATGAC.......................................................................................................................................................................................................................... 271.000.00-1.00---------------------
...........AAAAAAAAAGAAAAAAATTAGGTG....................................................................................................................................................................................................................... 241.000.00--1.00--------------------
...........AAAAAAAAAGAAAAAAATTAAG......................................................................................................................................................................................................................... 221.000.00---1.00-------------------
.........CAAAAAAAAAAGAAAAAAATTCGT......................................................................................................................................................................................................................... 241.000.00-1.00---------------------
............AAAAAAAAGAAAAAAATTAACAG....................................................................................................................................................................................................................... 231.000.00----1.00------------------
.........CAAAAAAAAAAGAAAAAAATTGCC......................................................................................................................................................................................................................... 241.000.00-1.00---------------------
................AAAAGAAAAAAATTAAGTATG..................................................................................................................................................................................................................... 211.000.00---1.00-------------------
................AAAAGAAAAAAATTAAGTAGC..................................................................................................................................................................................................................... 211.000.001.00----------------------
................AAAAGAAAAAAATTAAGACG...................................................................................................................................................................................................................... 201.000.00-----1.00-----------------
.........CAAAAAAAAAAGAAAAAAATGGTA......................................................................................................................................................................................................................... 241.000.00--1.00--------------------
...........ATACTTAATTTTTTTCTTTTTTTTT...................................................................................................................................................................................................................... 2511.001.00---1.00-------------------
.........CAAAAAAAAAAGAAAAAAATTTACT........................................................................................................................................................................................................................ 251.000.00--1.00--------------------
.........CAAAAAAAAAAGAAAAAAATTAGTG........................................................................................................................................................................................................................ 251.000.00--1.00--------------------
...........AAAAAAAAAGAAAAAAATTCAAG........................................................................................................................................................................................................................ 231.000.00---1.00-------------------
................................................................................................................................................................................CATCTCTTCTCATTTGTT........................................................ 181.000.00--------------------1.00--
.........CAAAAAAAAAAGAAAAAAATCGAG......................................................................................................................................................................................................................... 241.000.00-1.00---------------------
............AAAAAAAAGAAAAAAATTAAGGCT...................................................................................................................................................................................................................... 241.000.00--1.00--------------------
.......CTCAAAAAAAAAAGAAAAAAACAGG.......................................................................................................................................................................................................................... 251.000.00-1.00---------------------
.......CTCAAAAAAAAAAGAAAAAACAGG........................................................................................................................................................................................................................... 241.000.00-1.00---------------------
...........AAAAAAAAAGAAAAAAATTAAGTAG...................................................................................................................................................................................................................... 251.000.00-1.00---------------------
..........AAAAAAAAAAGAAAAAAATTAAGATTG..................................................................................................................................................................................................................... 271.000.00-----1.00-----------------
.........CAAAAAAAAAAGAAAAAAATCAGG......................................................................................................................................................................................................................... 241.000.00--1.00--------------------
.....GTCTCAAAAAAAAAAGAAAAAAATGCG.......................................................................................................................................................................................................................... 271.000.00-1.00---------------------
.......CTCAAAAAAAAAAGAAAAAACGGG........................................................................................................................................................................................................................... 241.000.00-1.00---------------------
.........CAAAAAAAAAAGAAAAAAATTCAGG........................................................................................................................................................................................................................ 251.000.00--1.00--------------------
..........AAAAAAAAAAGAAAAAAATTAATAAG...................................................................................................................................................................................................................... 261.000.001.00----------------------
............AAAAAAAAGAAAAAAATTAAGTATGAG................................................................................................................................................................................................................... 271.000.00-1.00---------------------
...........AAAAAAAAAGAAAAAAATTAAGTGA...................................................................................................................................................................................................................... 251.000.00-1.00---------------------
.........CAAAAAAAAAAGAAAAAAATTAGC......................................................................................................................................................................................................................... 241.000.00-1.00---------------------
.......CTCAAAAAAAAAAGAAAAAAACAGC.......................................................................................................................................................................................................................... 251.000.00-1.00---------------------
..........AAAAAAAAAAGAAAAAAATTAAGTATTAG................................................................................................................................................................................................................... 291.000.00----1.00------------------
.......CTCAAAAAAAAAAGAAAAAAATTTGT......................................................................................................................................................................................................................... 261.000.00-1.00---------------------
.........CAAAAAAAAAAGAAAAAAATTAAGCT....................................................................................................................................................................................................................... 261.000.00--1.00--------------------
.CTCTGTCTCAAAAAAAAAAGAAAACCGA............................................................................................................................................................................................................................. 281.000.00-1.00---------------------
......TCTCAAAAAAAAAAGAAAAAAAACGG.......................................................................................................................................................................................................................... 261.000.00--1.00--------------------
.........CAAAAAAAAAAGAAAAAAAGGCC.......................................................................................................................................................................................................................... 231.000.00-1.00---------------------
.....GTCTCAAAAAAAAAAGAAAAAATCGC........................................................................................................................................................................................................................... 261.000.00--1.00--------------------
.................................................................................................................................................................TAATTGTAATTTTGTCTTG...................................................................... 191.000.00-------1.00---------------
.......CTCAAAAAAAAAAGAAAAAAATTTTG......................................................................................................................................................................................................................... 261.000.00-1.00---------------------
.......CTCAAAAAAAAAAGAAAAACCG............................................................................................................................................................................................................................. 221.000.00--1.00--------------------
...CTGTCTCAAAAAAAAAAGAAAACAA.............................................................................................................................................................................................................................. 251.000.00-1.00---------------------
..............AAAAAAGAAAAAAATTAAGTAGAG.................................................................................................................................................................................................................... 241.000.00-1.00---------------------
..........AAAAAAAAAAGAAAAAAATTAATTAG...................................................................................................................................................................................................................... 261.000.00---1.00-------------------
.......CTCAAAAAAAAAAGAAAAAAAGAGG.......................................................................................................................................................................................................................... 251.000.00--1.00--------------------
.....GTCTCAAAAAAAAAAGAAAAAAATGGG.......................................................................................................................................................................................................................... 271.000.00--1.00--------------------
.......CTCAAAAAAAAAAGAAAAAAATTC........................................................................................................................................................................................................................... 241.000.00-1.00---------------------
.......CTCAAAAAAAAAAGAAAAAACCGG........................................................................................................................................................................................................................... 241.000.00--1.00--------------------
......TCTCAAAAAAAAAAGAAAAAAATGGG.......................................................................................................................................................................................................................... 261.000.00--1.00--------------------
.........CAAAAAAAAAAGAAAAAAATGATC......................................................................................................................................................................................................................... 241.000.00-1.00---------------------
.CTCTGTCTCAAAAAAAAAAGAAAAAGCT............................................................................................................................................................................................................................. 281.000.00-1.00---------------------
...........AAAAAAAAAGAAAAAAATTAACTG....................................................................................................................................................................................................................... 241.000.00--------1.00--------------
............................................................................................................................................................ATCTTTAATTGTAATCGC............................................................................ 181.000.00-------1.00---------------
.......CTCAAAAAAAAAAGAAAAAAATTTTGG........................................................................................................................................................................................................................ 271.000.00-1.00---------------------
..........AAAAAAAAAAGAAAAAAATTAAGAAAG..................................................................................................................................................................................................................... 271.000.00---1.00-------------------
.......CTCAAAAAAAAAAGAAAAAAATGTG.......................................................................................................................................................................................................................... 251.000.00--1.00--------------------
............AAAAAAAAGAAAAAAATTAACAT....................................................................................................................................................................................................................... 231.000.00----1.00------------------
......TCTCAAAAAAAAAAGAAAAAAATTCGC......................................................................................................................................................................................................................... 271.000.00--1.00--------------------
........TCAAAAAAAAAAGAAAAAAATTTT.......................................................................................................................................................................................................................... 241.000.00--1.00--------------------
......TCTCAAAAAAAAAAGAAAAAAATGGGC......................................................................................................................................................................................................................... 271.000.00--1.00--------------------
.......CTCAAAAAAAAAAGAAAAAAATCCGG......................................................................................................................................................................................................................... 261.000.00-1.00---------------------
....TAATTTTTTTCTTTTTTTTTTGAGACA........................................................................................................................................................................................................................... 2760.170.17--0.17--------------------
.AATTTTTTTCTTTTTTTTTTGAGACAGAG............................................................................................................................................................................................................................ 2970.140.14-0.14---------------------
.......................................................................................................................................................................................................AGAGTTTCTTTTGGAC................................... 1670.140.14-----------0.14-----------