ID: uc010vqa.1_intron_0_0_chr17_650523_r
GENE: GEMIN4(2)
chr17:650473-650834-


(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(9)
CELL-LINE 		(4)
CERVIX 		(2)
HEART 		(1)
HELA 		(6)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTGACACTTCTGCCGAAGACGTGGCCTTCTTCCTGGACGTCTGGTGGGAGGTGATGAAGCACAAGGGTCACCCGCAGGACCCCCTGCTCTCCCAGTTTAGTGCAATGGCCCATAAGTACCTGCCTGCCTTAGATGAGTTCCCCCATCCTCCAAAGAGGCTTAGGTCAGACCCAGACGCGTGCCCCACCATGCCCCTGTTGGCCATGCTGCTCCGCGGGCTGACACAGATCCAGAGTCGGATCCTGGGCCCGGGGAGGAAGTGCTGTGCGCTGGCCAACCTGGCTGACATGCTGACTGTGTTTGCGCTGACAGAGGACGACCCCCAGGAGGTGTCTGCAACCGTGTATCTGGACAAACTGGCC
.................................................................................................................................................((((((.....((((((((((.(((......(((((......)))))...(((..(((.(((......))))))..)))..........))).)).))))))))...)))))).((((...))))............................................................................................
...................................................................................................................................132.......................................................................................................................................270..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................................................................................................................................................................................................TGCAACCGTGTATCTGGACAAACTGGC.27134.0034.0034.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................GCTGACTGTGTTTGCGCTGACAGAGGAC.............................................28110.0010.0010.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................GCTGACTGTGTTTGCGCTGACAGAGGACGT...........................................3019.002.009.00-----------------------------------------------
.......................................................................................................................................................................................................................................................CCCGGGGAGGAAGTGACGA................................................................................................198.000.00-6.00---------2.00------------------------------------
.......................................................................................................................................................................................................................................................CCCGGGGAGGAAGTGACG.................................................................................................186.000.00-1.00----1.00--1.00------1.00----1.00-----------------1.00--------
...................................................................................................................................................................................................................................................................................................TGACTGTGTTTGCGCTGACAGAGGACGAC..........................................2915.005.004.00-----1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................GCTGACTGTGTTTGCGCTGACAGAGGACGA...........................................3014.004.004.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................GCTGACTGTGTTTGCGCTGACAGAGG...............................................2613.003.003.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................GCTGACTGTGTTTGCGCTGACAGAGGACG............................................2912.002.002.00-----------------------------------------------
...................................GACGTCTGGTGGGAGGTGAT...................................................................................................................................................................................................................................................................................................................2012.002.00-----2.00------------------------------------------
.......................................................................................................................................................................................................................................................................................................TGTGTTTGCGCTGACAGAGGACGA...........................................2412.002.001.00---------------------------------1.00-------------
......................................................................................................................................................................................................................................CAGAGTCGGATCCTGGGCCCGGGG............................................................................................................2412.002.00-------2.00----------------------------------------
.................................TGGACGTCTGGTGGGAGGTGATGA.................................................................................................................................................................................................................................................................................................................2412.002.001.00------1.00----------------------------------------
.................................TGGACGTCTGGTGGGAGGTGATGAAGCA.............................................................................................................................................................................................................................................................................................................2812.002.00--------2.00---------------------------------------
............................................................................................................................................................................................................TGCTGCTCCGCGGGCTGACACAGATCCAG.................................................................................................................................2912.002.00--2.00---------------------------------------------
........................................................................................................................................GTTCCCCCATCCTCCTCGG...............................................................................................................................................................................................................192.000.00------1.00------------------------1.00----------------
.............................................................................................................................................................................................................................................................................................ACATGCTGACTGTGTTTGCGCTGACAGA.................................................2811.001.00---1.00--------------------------------------------
............................................................................................................................................................................................................................................................................................................................................TCTGCAACCGTGTATCTGGACAAAC.....2511.001.001.00-----------------------------------------------
..........................................................................................................................................................................................................................................................................................................GTTTGCGCTGACAGAGGACGACCCCC......................................2611.001.00----1.00-------------------------------------------
................................................................................................................................................................................................................................................................................................................................................CAACCGTGTATCTGGACAAACTGGCC2611.001.001.00-----------------------------------------------
............................................................................................................................................................................................................................GACACAGATCCAGAGTCGGATCCTGGG...................................................................................................................2711.001.00---------1.00--------------------------------------
....................................................................................................................................................................................................................................................................................ACCTGGCTGACATGCTGACTGTGTTGCG..........................................................281.000.00--------------1.00---------------------------------
........................................................................................................................................................................................................................GGCTGACACAGATCCAGAGTC.............................................................................................................................2111.001.00-----1.00------------------------------------------
...................................................................................................................................................................................................................CCGCGGGCTGACACAGATCCAGAGTCG............................................................................................................................2711.001.00-------------------------------------------1.00----
.............................................................................................................................................................GCTTAGGTCAGACCCAGACGCGTG.....................................................................................................................................................................................2411.001.00---------------1.00--------------------------------
................................................................................................................................................................TAGGTCAGACCCAGACGCGTGCCCCA................................................................................................................................................................................2611.001.00----------1.00-------------------------------------
............................................................................................................................................................................................................................GACACAGATCCAGAGTCGGATCCTGGGC..................................................................................................................2811.001.001.00-----------------------------------------------
....................................................................................................................................................................................................................................................................................................................................AGGAGGTGTCTGCAAATTT...................191.000.00------------------1.00-----------------------------
.................................................................................................................................................................................................................................................................................................GCTGACTGTGTTTGCGCTGACAGAGGACGG...........................................3011.002.001.00-----------------------------------------------
................................................................................................................................................................TAGGTCAGACCCAGACGA........................................................................................................................................................................................181.000.001.00-----------------------------------------------
.......................................................................................................................................................................................................................................................CCCGGGGAGGAAGTGCCGA................................................................................................191.000.00---------------------------1.00--------------------
...............................................................................................................................................................................................................................................................................GGCCAACCTGGCTGACATGCT......................................................................2111.001.00----1.00-------------------------------------------
......................................................................................................................................................................................................TGGCCATGCTGCTCCGCGGGCTGACACAGACCC...................................................................................................................................331.000.00---1.00--------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................TGCAACCGTGTATCTGGACAAACTGGCC2811.001.001.00-----------------------------------------------
..................................................................................................................................................................................................................................................................................................CTGACTGTGTTTGCGCTGACAGAGGAC.............................................2711.001.001.00-----------------------------------------------
.........................................................................................TCCCAGTTTAGTGCAATGGC.............................................................................................................................................................................................................................................................2011.001.00------------------------1.00-----------------------
..............................................................................................................................................................................................................................................................................................................................................TGCAACCGTGTATCTGGACAAACTG...2511.001.001.00-----------------------------------------------
........................................................................................................................................................................................................................................................................................................................AGGACGACCCCCAGGAGGTGTCCGC.........................251.000.00--1.00---------------------------------------------
................................................................................................................................................................................................................................................................................................TGCTGACTGTGTTTGCGCTGACAGAGG...............................................2711.001.00----------------------------1.00-------------------
..................................................................................................................................................................................................................................................................................................CTGACTGTGTTTGCGCTGACAGAGGACGA...........................................2911.001.00-----------------------------------------1.00------
................................CTGGACGTCTGGTGGGAGGTGA....................................................................................................................................................................................................................................................................................................................2211.001.00----1.00-------------------------------------------
............CCGAAGACGTGGCCTTTT............................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------1.00--------------
......................................GTCTGGTGGGAGGTGATGAA................................................................................................................................................................................................................................................................................................................2011.001.00------------------------------------1.00-----------
.......................................................................................................................................................................................................................................................................................................TGTGTTTGCGCTGACAGAGGAC.............................................2211.001.00----------1.00-------------------------------------
....................................................................................................................................................................................................................................................................................................................ACAGAGGACGACCCCCAGGAG.................................2111.001.00--1.00---------------------------------------------
.....................................................................................................................................................................................................................................................GGCCCGGGGAGGAAGGCGG..................................................................................................191.000.00-----------------1.00------------------------------
............................................................................................CAGTTTAGTGCAATGGCCC...........................................................................................................................................................................................................................................................1911.001.00-----------------------1.00------------------------
..............................TCCTGGACGTCTGGTG............................................................................................................................................................................................................................................................................................................................1611.001.001.00-----------------------------------------------
......................................................................................................................................................................................................................................................................................................CTGTGTTTGCGCTGACAGAGGACGA...........................................2511.001.001.00-----------------------------------------------
............................................................................................................................................................................................................TGCTGCTCCGCGGGCTGACACAGACCC...................................................................................................................................271.000.00--1.00---------------------------------------------
.....................................................................................................................................................................CAGACCCAGACGCGTGCCCCACCATGC..........................................................................................................................................................................2711.001.001.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................GCTGACTGTGTTTGCGCTGACAGAGGACA............................................2911.0010.001.00-----------------------------------------------
................................................................................................................................................................................................................................................................................................TGCTGACTGTGTTTGCGCTGACAGAGGAC.............................................2911.001.001.00-----------------------------------------------
....................................................................................................................................................................................................................................................................................................................................AGGAGGTGTCTGCAACCGTT..................201.000.00----------------1.00-------------------------------
.....................................................................................................................................................................................................................................................................................CCTGGCTGACATGCTGACTGTGTTT............................................................2511.001.001.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................GCTGACTGTGTTTGCGCTGACAGAGGACGC...........................................3011.002.001.00-----------------------------------------------
.............................TTCCTGGACGTCTGGTTG...........................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------------------1.00---
.................................................................................................................................................................................................................................................................................................GCTGACTGTGTTTGCGCTGACAG..................................................2311.001.00-------------1.00----------------------------------
.................................................................................................................................................................................................................................................................................................................................CCCAGGAGGTGTCTGCAACCG....................2111.001.00---------------1.00--------------------------------
......................................................................................................................................................................................................................CGGGCTGACACAGATCCAGAGTCG............................................................................................................................2411.001.00----1.00-------------------------------------------
.........................................................................................................................................................................................................CCATGCTGCTCCGCGGGCTGACACAGATCC...................................................................................................................................3011.001.00------------1.00-----------------------------------
......................................................................................................................................................................................................................................................................................................CTGTGTTTGCGCTGACAGAGGACGAC..........................................2611.001.001.00-----------------------------------------------
......................................................................................................................................................................AGACCCAGACGCGTGCCCCACCATGCCCCTGC....................................................................................................................................................................321.000.00---1.00--------------------------------------------
..................................................................................................................................AGATGAGTTCCCCCACG.......................................................................................................................................................................................................................171.000.00---1.00--------------------------------------------
.................................TGGACGTCTGGTGGGAGGTGATGAAGC..............................................................................................................................................................................................................................................................................................................2711.001.001.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................GCGCTGACAGAGGACGACC.........................................1911.001.00-------------------------1.00----------------------
......................................................................................................................................................................................................................................................GCCCGGGGAGGAAGTGCCGAA...............................................................................................211.000.00-----------------------------------1.00------------
.....................................................................................................................................................................................................................................CCAGAGTCGGATCCTGGGCCCGGGGAG..........................................................................................................2711.001.00----------------------1.00-------------------------
...........................................................................................................................................................................................................................................................................................TGACATGCTGACTGTGTTTGCGC........................................................2311.001.00-------------1.00----------------------------------
...................................GACGTCTGGTGGGAGA.......................................................................................................................................................................................................................................................................................................................161.000.00---------------------------------------------1.00--
...................................................................................................................................................................................................................................................................................................................................CAGGAGGTGTCTGCAACCGTGTA................2311.001.00----1.00-------------------------------------------
...ACACTTCTGCCGAAGACGTGGCCTTC.............................................................................................................................................................................................................................................................................................................................................2611.001.00-----------------------------1.00------------------
......................................................................................................................................................CAAAGAGGCTTAGGTCAG..................................................................................................................................................................................................1811.001.00-----1.00------------------------------------------
....................................................................................................................................................TCCAAAGAGGCTTAGGTCAGACCCAGA...........................................................................................................................................................................................2711.001.001.00-----------------------------------------------
............................................................................................................................................................................................................................................................................................GACATGCTGACTGTGTTTGCGCTGACAGAGGAC.............................................3311.001.00--------------------------------1.00---------------
...................................................................................................................................................................................................................................................................................................TGACTGTGTTTGCGCTGACAGAGGAC.............................................2611.001.001.00-----------------------------------------------
..............................................................................................................................................................................ACGCGTGCCCCACCATGCCCCTGTTGGC................................................................................................................................................................2811.001.001.00-----------------------------------------------
.........................................................................................................................................................................................................................................................................................................TGTTTGCGCTGACAGAGGACGACCCCC......................................2711.001.00--1.00---------------------------------------------
................................................................................................................................................................................................................GCTCCGCGGGCTGACACAGATCCAGA................................................................................................................................2611.001.00--------------------1.00---------------------------
.........................................................................................................................................................AGAGGCTTAGGTCAGACCCAGA...........................................................................................................................................................................................2211.001.00------------------------------1.00-----------------
.......................................................................................................................................................................................................................................................................................................TGTGTTTGCGCTGACAGAGGACGAC..........................................2511.001.001.00-----------------------------------------------
...........................................................................................................................CTGCCTTAGATGAGTT...............................................................................................................................................................................................................................1630.330.33-----------------------------------------------0.33
..........................................................................................................................................................................................................................................................................................................................................................TCTGGACAAACTGGC.1560.170.170.17-----------------------------------------------

Antisense strand
TTGACACTTCTGCCGAAGACGTGGCCTTCTTCCTGGACGTCTGGTGGGAGGTGATGAAGCACAAGGGTCACCCGCAGGACCCCCTGCTCTCCCAGTTTAGTGCAATGGCCCATAAGTACCTGCCTGCCTTAGATGAGTTCCCCCATCCTCCAAAGAGGCTTAGGTCAGACCCAGACGCGTGCCCCACCATGCCCCTGTTGGCCATGCTGCTCCGCGGGCTGACACAGATCCAGAGTCGGATCCTGGGCCCGGGGAGGAAGTGCTGTGCGCTGGCCAACCTGGCTGACATGCTGACTGTGTTTGCGCTGACAGAGGACGACCCCCAGGAGGTGTCTGCAACCGTGTATCTGGACAAACTGGCC
.................................................................................................................................................((((((.....((((((((((.(((......(((((......)))))...(((..(((.(((......))))))..)))..........))).)).))))))))...)))))).((((...))))............................................................................................
...................................................................................................................................132.......................................................................................................................................270..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................CCCTGCTCTCCCAGTTAGA...................................................................................................................................................................................................................................................................... 191.000.00----------------------------------------------1.00-
.............................................................................................................................................................................................................................................................................................................................................TTTGTCCAGATACACGGTTGCAG...... 2311.001.00-------------------------------------1.00----------
.................................................................................................................................................................................................................................................................AAGTGCTGTGCGCTGGTGT...................................................................................... 191.000.00--------------1.00---------------------------------
......................................................................................................................................GAGTTCCCCCATCCTCCATG................................................................................................................................................................................................................ 201.000.00----------------------------------------1.00-------
.....................................................................................................................................TGAGTTCCCCCATCCTCCAAGCC.............................................................................................................................................................................................................. 231.000.00--------------------------1.00---------------------
......................................................................................................................................GAGTTCCCCCATCCTCCAAAGTG............................................................................................................................................................................................................. 231.000.00------------1.00-----------------------------------
.........................................................AGCACAAGGGTCACCCGCAGCT........................................................................................................................................................................................................................................................................................... 221.000.00-------------------1.00----------------------------
...............................................................................................................................................................................................................................................................................GGCCAACCTGGCTGACATTCG...................................................................... 211.000.00---1.00--------------------------------------------
..............................................................................ACTGGGAGAGCAGGGGGT.......................................................................................................................................................................................................................................................................... 1811.001.00------------------------------------------1.00-----
.............................................................................................................................................................................................................................................CCTCCCCGGGCCCAGGATCC......................................................................................................... 2011.001.00--------------------------------------1.00---------