ID: uc010vpp.1_intron_0_0_chr16_89940268_f.5p
GENE: TCF25(1)
chr16:89940218-89940467+


(4)
AGO2.ip
(4)
B-CELL
(1)
BRAIN
(9)
BREAST
(26)
CELL-LINE
(7)
CERVIX
(4)
HEART
(2)
HELA
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(1)
RRP40.ip
(42)
SKIN
(1)
XRN.ip

Sense strand
CCGGGGGCGCAGGGAAGGAGGGCGTCCGAGTCAACAACCGCTTCGAGCTGGTGAGGAGCGCGGCGGCCCGGGTGGGGGTGGGGTGGCCCTTGACGTTGTGGGGCGGGGCGAGCGTCCAGCCGGGTCGGGGAGCGGGGTTGTGATGCCAGGGGTGGGAAGGGTGACGTGGGTCCCAGCCGCAGTGGGGAGGGCGGGGCCGTGCGTCGGGGCCAGGGCGACGCGGGTGGGCGGTGGCGTGGGGTGAAGACGG
.....................................................................................(((((((((.......(((.((((....)))).)))..))))))).)).....................................................................................................................
................................................................................81..............................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925PAZD5SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
TAX577579(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040016(GSM532901)
G645N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
GSM532888(GSM532888)
G761T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
TAX577453(Rovira)
total RNA. (breast)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
........................................................................................................................CGGGTCGGGGAGCGGGGCGGA.............................................................................................................21236.5016.50-13.008.50--3.50-4.00--2.503.00-1.00-----------0.50------------------------------------------------0.50------------------------------
........................................................................................................................CGGGTCGGGGAGCGGGG.................................................................................................................17216.5016.50-6.00---1.00-0.50------3.00----1.50-----0.50-------0.50----0.50-----------------------1.00-------------------0.50-0.500.50--0.50----------------
........................................................................................................................CGGGTCGGGGAGCGGGGCGG..............................................................................................................2029.0016.50-0.501.50--1.50-1.00--1.00-0.500.50------------------------0.50-----------------0.50-----------------0.50--------0.50-------0.50-------------
........................................................................................................................CGGGTCGGGGAGCGGGGCG...............................................................................................................1924.0016.50-1.000.50--0.50-0.50--0.50---------------------------------------------0.50------------------------------------0.50-----------
........................................................................................................................CGGGTCGGGGAGCGGG..................................................................................................................1633.003.00-0.33------------0.33----1.00-------------0.33--0.33--------------------------------------------0.33--------------0.33--------
.....................................................................................GCCCTTGACGTTGTGAG....................................................................................................................................................173.000.00----------------3.00----------------------------------------------------------------------------------------
..........AGGGAAGGAGGGCGTCCG..............................................................................................................................................................................................................................1811.001.00---------------------------------------1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................................GCGGGTGGGCGGTGGCGGA............191.000.00---------1.00-----------------------------------------------------------------------------------------------
......................CGTCCGAGTCAACAACCGCTTCGAGCTGAT......................................................................................................................................................................................................301.000.00---------------------------------------------------------------1.00-----------------------------------------
.....................................................................................................................................................................................................................................GGTGGCGTGGGGTGAAG....1711.001.00-----------------------1.00---------------------------------------------------------------------------------
...............................CAACAACCGCTTCGAGCTG........................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------1.00---------------------------------
................................AACAACCGCTTCGAGCTTAG......................................................................................................................................................................................................201.000.00--------------------------------1.00------------------------------------------------------------------------
.......................................................................................................................................................................................GGGGAGGGCGGGGCCGCCG................................................191.000.00-------------------------------------------------1.00-------------------------------------------------------
...............................................................................................................................................................................................CGGGGCCGTGCGTCGGAG.........................................181.000.00-----------1.00---------------------------------------------------------------------------------------------
.........................CCGAGTCAACAACCGCTTCGAGCTGA.......................................................................................................................................................................................................261.000.00--------------------1.00------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GCGGGTGGGCGGTGGTTT.............1881.000.12----------------------------------------------------------------------------1.00----------------------------
.........CAGGGAAGGAGGGCGTC................................................................................................................................................................................................................................1711.001.00------------------1.00--------------------------------------------------------------------------------------
................................................TGGTGAGGAGCGCGGC..........................................................................................................................................................................................1621.001.00----------------------------------------------------------------------1.00----------------------------------
..................AGGGCGTCCGAGTCAACAAC....................................................................................................................................................................................................................2011.001.00------------------------------------------------------------------------------1.00--------------------------
............................................................................................ACGTTGTGGGGCGGGGGAC...........................................................................................................................................191.000.00-----------------------------------------------------------------1.00---------------------------------------
.....................................................................................................................................................................................GTGGGGAGGGCGGGG......................................................1501.001.00----------------------1.00----------------------------------------------------------------------------------
......................................................................................................................................................................................TGGGGAGGGCGGGGCCGGGA................................................201.000.00--------------------------------------------------1.00------------------------------------------------------
................................................................................................................................................................................................................................TGGGCGGTGGCGTGGCCGG.......191.000.00---------------------------------------------------------1.00-----------------------------------------------
.......................................................................................................................................................................................................................CGACGCGGGTGGGCGGCG.................181.000.00----------------------------------------------------------1.00----------------------------------------------
...........................GAGTCAACAACCGCTTCGAGCTGAT......................................................................................................................................................................................................251.000.00---------------------------------------------------------------------1.00-----------------------------------
......GCGCAGGGAAGGAGGGTG..................................................................................................................................................................................................................................181.000.00-----------------------------------------1.00---------------------------------------------------------------
.............................................................................................................................................................AGGGTGACGTGGGTCCCAGCCGCAGTGGGG...............................................................3011.001.00-----------------------------------------------------------1.00---------------------------------------------
...................................................................................................................................................AGGGGTGGGAAGGGTGAC.....................................................................................1811.001.00---------------------------------1.00-----------------------------------------------------------------------
........................................................................................................................................GTTGTGATGCCAGGGGTGG...............................................................................................1911.001.00------------------------------------1.00--------------------------------------------------------------------
........................TCCGAGTCAACAACCGCTTCGAGCTGA.......................................................................................................................................................................................................271.000.00--------------------1.00------------------------------------------------------------------------------------
....................................................................CGGGTGGGGGTGGGGTCC....................................................................................................................................................................181.000.00-------------1.00-------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................GGCGGTGGCGTGGGGGGA......181.000.00-----------------------1.00---------------------------------------------------------------------------------
.............................................................................................................................................................................................GGCGGGGCCGTGCGTCGG...........................................1811.001.00-------------1.00-------------------------------------------------------------------------------------------
.CGGGGGCGCAGGGAAGGAGGGC...................................................................................................................................................................................................................................2211.001.00----------------------------------1.00----------------------------------------------------------------------
....................................................................................................................................................GGGGTGGGAAGGGTGAGGCG..................................................................................201.000.00------------------------------------------------------1.00--------------------------------------------------
.........................................................................................................................GGGTCGGGGAGCGGGG.................................................................................................................1641.001.00----------0.25----------------------------------------------------------------------0.25--------0.50--------------
.........................................................................................................................GGGTCGGGGAGCGGGGCG...............................................................................................................1840.751.00----------0.25-------------------------------------------------------------------------------------------0.250.25-
........................................................................................................................CGGGTCGGGGAGCGG...................................................................................................................1540.750.75-0.25-----------------0.25---------------------------------------------------------------------0.25---------------
........................................................................................................................CGGGTCGGGGAGCGGGAC................................................................................................................1830.673.00-0.33---0.33---------------------------------------------------------------------------------------------------
..........................................................CGCGGCGGCCCGGGT.................................................................................................................................................................................1540.500.50---------------------------------------------------------------------------------------0.50-----------------
........................................................................................................................CGGGTCGGGGAGCGGGGCGAA.............................................................................................................2120.5016.50----------0.50----------------------------------------------------------------------------------------------
...............................................CTGGTGAGGAGCGCG............................................................................................................................................................................................1520.500.50--------------------------------------------------------------------------------------0.50------------------
...............................................................................................................................................................................GCCGCAGTGGGGAGGGC..........................................................1720.500.50----------------------------------0.50----------------------------------------------------------------------
........................................................................................................................CGGGTCGGGGAGCGGGGCGA..............................................................................................................2020.5016.50--0.50------------------------------------------------------------------------------------------------------
.........................................................................................................................GGGTCGGGGAGCGGGGCGGA.............................................................................................................2040.501.00----------------------------------------------------------------------------------------------0.25----0.25-----
........................................................................................................................CGGGTCGGGGAGCGGGGCAGA.............................................................................................................2120.5016.50-------0.50-------------------------------------------------------------------------------------------------
........................................................................................................................CGGGTCGGGGAGCGGGGAGGA.............................................................................................................2120.5016.50-----0.50---------------------------------------------------------------------------------------------------
........................................................................................................................CGGGTCGGGGAGCGGGGCTG..............................................................................................................2020.5016.50--------------------------------------------------------------------------------------------0.50------------
........................................................................................................................CGGGTCGGGGAGCGGGGCCG..............................................................................................................2020.5016.50-------------------------0.50-------------------------------------------------------------------------------
.........................................................................................................................GGGTCGGGGAGCGGG..................................................................................................................1590.330.33-------------------0.11--------------------------------------------------------------------------0.11---------0.11
........................................................................................................................CGGGTCGGGGAGCGGGCC................................................................................................................1830.333.00-0.33-------------------------------------------------------------------------------------------------------
........................................................................................................................CGGGTCGGGGAGCGGA..................................................................................................................1640.250.75----------------------------------------------------------------------------------------------------0.25----
........................................................................................................................CGGGTCGGGGAGCGGAG.................................................................................................................1740.250.75-----0.25---------------------------------------------------------------------------------------------------
..........................................................................................................................GGTCGGGGAGCGGGG.................................................................................................................1580.250.25-------------------0.12-------------0.12-----------------------------------------------------------------------
.........................................................................................................................GGGTCGGGGAGCGGGGCGG..............................................................................................................1940.251.00--------------------------------------------------------------------------------------------------0.25------
........................................................................................................................CGGGTCGGGGAGCGGT..................................................................................................................1640.250.75-----------------------------------------------------------------------------------------------------0.25---
......................................................................................................................GCCGGGTCGGGGAGC.....................................................................................................................1540.250.25-----------------------------------------------------------------------------------------0.25---------------
...........................................................................................................................................................................................................................GCGGGTGGGCGGTGG................1580.120.12-------------------------------------0.12-------------------------------------------------------------------

Antisense strand
CCGGGGGCGCAGGGAAGGAGGGCGTCCGAGTCAACAACCGCTTCGAGCTGGTGAGGAGCGCGGCGGCCCGGGTGGGGGTGGGGTGGCCCTTGACGTTGTGGGGCGGGGCGAGCGTCCAGCCGGGTCGGGGAGCGGGGTTGTGATGCCAGGGGTGGGAAGGGTGACGTGGGTCCCAGCCGCAGTGGGGAGGGCGGGGCCGTGCGTCGGGGCCAGGGCGACGCGGGTGGGCGGTGGCGTGGGGTGAAGACGG
.....................................................................................(((((((((.......(((.((((....)))).)))..))))))).)).....................................................................................................................
................................................................................81..............................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925PAZD5SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
TAX577579(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040016(GSM532901)
G645N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
GSM532888(GSM532888)
G761T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
TAX577453(Rovira)
total RNA. (breast)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
........................GAAGCGGTTGTTGACTCGGA.............................................................................................................................................................................................................. 20118.0018.008.00-----4.00----------1.00------------2.00------------1.00--------1.00----------------------1.00-----------------------------
........................AGCGGTTGTTGACTCGGA................................................................................................................................................................................................................ 1827.007.000.50-----2.50--3.00-----1.00-----------------------------------------------------------------------------------------
....................CGGTTGTTGACTCGGACGCC.................................................................................................................................................................................................................. 2016.006.002.00--------------------2.00------2.00----------------------------------------------------------------------------
.....................GTTGTTGACTCGGACGC.................................................................................................................................................................................................................... 1715.005.00---3.001.00------------1.00---------------------------------------------------------------------------------------
....................GAAGCGGTTGTTGACTCGGACGCC.............................................................................................................................................................................................................. 2415.005.00---4.00------------------------------------1.00----------------------------------------------------------------
..........................GAAGCGGTTGTTGACTCG.............................................................................................................................................................................................................. 1814.004.00----3.00---------------------------------------1.00------------------------------------------------------------
........................AAGCGGTTGTTGACTCGGA............................................................................................................................................................................................................... 1914.004.00----1.00-1.00---------------1.00-------------------1.00--------------------------------------------------------------
..................................ACCAGCTCGAAGCGGTTG...................................................................................................................................................................................................... 1812.002.00---2.00-----------------------------------------------------------------------------------------------------
....................GTTGTTGACTCGGACGCC.................................................................................................................................................................................................................... 1812.002.00---------------------------1.00-------------------------1.00---------------------------------------------------
.............................................................................................................CACAACCCCGCTCCCCGACCCGGCTGGACGCTC............................................................................................................ 3312.002.00------------2.00--------------------------------------------------------------------------------------------
.................GTTGACTCGGACGCCCTC....................................................................................................................................................................................................................... 1812.002.00--------1.00----------------------------------------------1.00-------------------------------------------------
....................GGCGTCCGAGTCAACAACCGCTTCA............................................................................................................................................................................................................. 252.000.00---------------2.00-----------------------------------------------------------------------------------------
....................GCGGTTGTTGACTCGGACGCC................................................................................................................................................................................................................. 2112.002.00----2.00----------------------------------------------------------------------------------------------------
......................AGCGGTTGTTGACTCGGACG................................................................................................................................................................................................................ 2012.002.001.00--------------------------------------------------1.00-----------------------------------------------------
...........................GCTCGAAGCGGTTGTTGACTC.......................................................................................................................................................................................................... 2112.002.002.00--------------------------------------------------------------------------------------------------------
.........................CCGAGTCAACAACCGCTTCG............................................................................................................................................................................................................. 202.000.002.00--------------------------------------------------------------------------------------------------------
.....................CGGTTGTTGACTCGGACGC.................................................................................................................................................................................................................. 1911.001.00---1.00-----------------------------------------------------------------------------------------------------
.........GGACGCCCTCCTTCCCTG............................................................................................................................................................................................................................... 1811.001.00-------------------------------1.00-------------------------------------------------------------------------
.....................GGTTGTTGACTCGGACGC................................................................................................................................................................................................................... 1811.001.00------------------------------------------------------------------1.00--------------------------------------
...............................CAACAACCGCTTCGAGCGCTC...................................................................................................................................................................................................... 211.000.001.00--------------------------------------------------------------------------------------------------------
.....................GCGGTTGTTGACTCGGACGC................................................................................................................................................................................................................. 2011.001.00------------------------1.00--------------------------------------------------------------------------------
..................................................................................................................................................................................GCAGTGGGGAGGGCGTTC...................................................... 181.000.00--------------------------1.00------------------------------------------------------------------------------
.....................AGCGGTTGTTGACTCGGACGC................................................................................................................................................................................................................ 2111.001.00-------------------------------------------------------------------1.00-------------------------------------
...........................GAGTCAACAACCGCTTCCGA........................................................................................................................................................................................................... 201.000.001.00--------------------------------------------------------------------------------------------------------
.....................................................................................................................................GGGGTTGTGATGCCAGGGGTGT............................................................................................... 221.000.00--------1.00------------------------------------------------------------------------------------------------
.............GTTGACTCGGACGCCCTCCTTC....................................................................................................................................................................................................................... 2211.001.00--------------------------1.00------------------------------------------------------------------------------
................................AACAACCGCTTCGAGTACT....................................................................................................................................................................................................... 191.000.001.00--------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................TTCACCCCACGCCACCGC..... 1811.001.00------------------------------------------------1.00--------------------------------------------------------
.......................................................................................................CGGCTGGACGCTCGCCCCG................................................................................................................................ 1911.001.00--------1.00------------------------------------------------------------------------------------------------
...........................GAGTCAACAACCGCTTCTGA........................................................................................................................................................................................................... 201.000.001.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................GGGACCCACGTCACCCTTC............................................................................ 1911.001.00------------------------------------------------------------1.00--------------------------------------------
...........................GAGTCAACAACCGCTTCCG............................................................................................................................................................................................................ 191.000.001.00--------------------------------------------------------------------------------------------------------
.............................CTCGAAGCGGTTGTTGAC........................................................................................................................................................................................................... 1811.001.00----1.00----------------------------------------------------------------------------------------------------
.........................AGCTCGAAGCGGTTGTTGACTCGG......................................................................................................................................................................................................... 2411.001.00----------------------------------------------1.00----------------------------------------------------------
.................CGGTTGTTGACTCGGACGCCCTC.................................................................................................................................................................................................................. 2311.001.00----------------------------------------------------------------1.00----------------------------------------
.................GTTGTTGACTCGGACGCCCTC.................................................................................................................................................................................................................... 2111.001.00--------1.00------------------------------------------------------------------------------------------------
.............................................................GGCGGCCCGGGTGGGGCGGA......................................................................................................................................................................... 201.000.00------------------1.00--------------------------------------------------------------------------------------
......................CTCGAAGCGGTTGTTGACTCGGACG........................................................................................................................................................................................................... 2511.001.00-------------------------------------------------------------1.00-------------------------------------------
..........................GCTCGAAGCGGTTGTTGACTCG.......................................................................................................................................................................................................... 2211.001.00------------1.00--------------------------------------------------------------------------------------------
...............................CAACAACCGCTTCGAGGCT........................................................................................................................................................................................................ 191.000.001.00--------------------------------------------------------------------------------------------------------
........CTCGGACGCCCTCCTTCCCTGC............................................................................................................................................................................................................................ 2211.001.00------------------------1.00--------------------------------------------------------------------------------
......................................................................................................CCGGCTGGACGCTCGCCCCGC............................................................................................................................... 2111.001.00------------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................................................................................ACCCGCGTCGCCCTGGCCC......................... 1911.001.00--------------------------------1.00------------------------------------------------------------------------
............................................................................................................................................................................................................CGGGGCCAGGGCGACTGG............................ 181.000.00---------1.00-----------------------------------------------------------------------------------------------
....................................................................................................CTGGACGCTCGCCCCGCCC................................................................................................................................... 1911.001.00-----------------------------1.00---------------------------------------------------------------------------
....................................................................................................................................CTGGCATCACAACCCCG..................................................................................................... 1711.001.00-----------------------------------1.00---------------------------------------------------------------------
........GACGCCCTCCTTCCCTGC................................................................................................................................................................................................................................ 1811.001.00---------------------------------------------1.00-----------------------------------------------------------
...........................GAGTCAACAACCGCTTCCGG........................................................................................................................................................................................................... 201.000.001.00--------------------------------------------------------------------------------------------------------
...................CAGCTCGAAGCGGTTGTTGACTCGGACGCCC........................................................................................................................................................................................................ 3111.001.00----1.00----------------------------------------------------------------------------------------------------
..............................TCAACAACCGCTTCGAGAAC........................................................................................................................................................................................................ 201.000.001.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................CACGTCACCCTTCCCACCCCTGGCATCAC.................................................................................. 2911.001.00-------------------------------1.00-------------------------------------------------------------------------
..............................................................................................................CCCCGACCCGGCTGGACGCT........................................................................................................................ 2011.001.00--------1.00------------------------------------------------------------------------------------------------
.................................................................................................................TCCCCGACCCGGCTGGAC....................................................................................................................... 1811.001.00-----------------------------------------------1.00---------------------------------------------------------
.........................................................................GGGGGTGGGGTGGCCGACG.............................................................................................................................................................. 191.000.00--------------------------------------------------------------------------------1.00------------------------
.............................................................................................................CCCGACCCGGCTGGACGCTC......................................................................................................................... 2011.001.00------------------------------------------------------------------------1.00--------------------------------
....................................................................................................................................CACCCCTGGCATCACAACCCCG................................................................................................ 2211.001.00--------1.00------------------------------------------------------------------------------------------------
.....................TTGTTGACTCGGACGC..................................................................................................................................................................................................................... 1611.001.00---------------------------1.00-----------------------------------------------------------------------------
.........................CCGAGTCAACAACCGCTTGC............................................................................................................................................................................................................. 201.000.001.00--------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................GCCCACCCGCGTCGCCCTGGC..................... 2111.001.00-------------------------------------------------------------------------------1.00-------------------------
.......................AAGCGGTTGTTGACTCGGAC............................................................................................................................................................................................................... 2011.001.001.00--------------------------------------------------------------------------------------------------------
.........................................................GCGCGGCGGCCCGGGTGGGGGA........................................................................................................................................................................... 221.000.00-----------------------------1.00---------------------------------------------------------------------------
..........................CTCGAAGCGGTTGTTGACTCG........................................................................................................................................................................................................... 2111.001.00-----------------------------------------------------------------------------1.00---------------------------
.......................GTTGTTGACTCGGAC.................................................................................................................................................................................................................... 1511.001.00-------------------------------------1.00-------------------------------------------------------------------
.....................GAAGCGGTTGTTGACTCGGACGC.............................................................................................................................................................................................................. 2311.001.00-----------------1.00---------------------------------------------------------------------------------------
.......................................................................................................................CCGGGTCGGGGAGCGGGA................................................................................................................. 181.000.00-------------------------------------------------------------------------1.00-------------------------------
..........................GCGGTTGTTGACTCG................................................................................................................................................................................................................. 1520.500.50---0.50-----------------------------------------------------------------------------------------------------
.........................AGCGGTTGTTGACTCGG................................................................................................................................................................................................................ 1720.500.50-----------------------------------0.50---------------------------------------------------------------------
........................GCGGTTGTTGACTCGGA................................................................................................................................................................................................................. 1720.500.50--------------------0.50------------------------------------------------------------------------------------
........................CGGTTGTTGACTCGGA.................................................................................................................................................................................................................. 1620.500.50-------------------------0.50-------------------------------------------------------------------------------
...CTCCTTCCCTGCGCCCC...................................................................................................................................................................................................................................... 1730.330.33-------------------------------------------------------------------------------------------------0.33-------
..........................................................................................................CGGCTGGACGCTCGCC................................................................................................................................ 1630.330.33-----------------------------------------------------------------------------------------------0.33---------