ID: uc010vpd.1_intron_1_0_chr16_88930788_r
GENE: (5)
chr16:88930738-88931310-


(2)
B-CELL
(2)
BRAIN
(1)
BREAST
(7)
CELL-LINE
(2)
CERVIX
(1)
HELA
(1)
OTHER
(1)
RRP40.ip
(14)
SKIN
(1)
UTERUS

Sense strand
AGGCCGCCGTGGAGCTGGACCAGAGCCTCTTCCGGGGCCGGGTCATCAAGGTGCGCCGGTGCTCCCCAGGTCCAGGAACATGAGCGCAGAGGGGCTGGCCCACTGGCCCTGGGACACACAGCAGCCCCAGCTGGCTCCTCTCTGCACAGCGTGTCTCAGGCACGGTGCTTGGCTGGGCCTGGACAGGATGTGGCGGGACCCTCGGACCTGAAGCTGGGTTTGGTCTGCCAGTGGCATGGTGGGGAAGTGTCCCCTCTCGGGCGGGAGCCCCCTCTGCAGGGGTGCTGGCCGTGACCCCCCCCTCTGCAGGGGTGCTGGCCGTGACCCCCCCCTCTGCAGGGGTGCTGGCCGTGACGGGGTGTCATATGACAGCTATGGTAGGCAAAGGCAGGGAACCCTGTAGGCCCGAATGGTATCCTGAGCCGGGCAGGACCCCATGCTCCGGGGTGGTGGGGGCTGCGGGGGCTGTGAGCTGGGTCTCGGCTGCTCCTTGAGGAGGACTCAAAACAGGCCTTTGCTCCAGGTGCTGCCGAAAAGAACCAACTTCCCTGGGATCAGCTCCACAGACCGCGG
...........................................................................................................................................................................................................................................................................................................................................................................................................((((((((.(((...((.((((((((((.(((......)))..)))).)))))).))))).))))))))......(((((.....)))))........................................................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................390............................................................................................485......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189784SRR189782SRR189786SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATTTGT..............................................................................................................................................................2120.000.007.004.003.004.00---------------1.00----1.00-----------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATTTGC..............................................................................................................................................................213.000.001.002.00----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATCTGT..............................................................................................................................................................213.000.002.00--------1.00--------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGGCTGTGAGCTGGGGCTT............................................................................................223.000.00----3.00-------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................AACCCTGTAGGCCCGAATTTGT..............................................................................................................................................................222.000.002.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATTCGT..............................................................................................................................................................212.000.00--1.001.00--------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATTTG...............................................................................................................................................................202.000.00--2.00---------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATTTGG..............................................................................................................................................................212.000.002.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATTGGT..............................................................................................................................................................211.000.001.00-----------------------------------
.....................................................................................................................................................................................................................CTGGGTTTGGTCTGCCGGA.....................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------1.00--------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATCGG...............................................................................................................................................................201.000.00--1.00---------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATTGT...............................................................................................................................................................201.000.001.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATGTGTT.............................................................................................................................................................221.000.001.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATGGGTT.............................................................................................................................................................221.000.001.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATTCGC..............................................................................................................................................................211.000.001.00-----------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................AACCCTGTAGGCCCGAATTTGC..............................................................................................................................................................221.000.001.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATGGGTTC............................................................................................................................................................231.000.001.00-----------------------------------
........................................................................CAGGAACATGAGCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................161.000.00-------------1.00----------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCTGCGGGGGCTGGGAG.....................................................................................................201.000.00-----------------1.00------------------
................................................................................................................................................................................................................................................GGGGAAGTGTCCCCTAGG...........................................................................................................................................................................................................................................................................................................................181.000.00---------1.00--------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATTTTT..............................................................................................................................................................211.000.00--1.00---------------------------------
..........................................................................................................................................................................................................................................................................................................................................................GGCCGTGACGGGGTGCTA.................................................................................................................................................................................................................181.000.00-----------------------1.00------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGGGGCTGCGGA..............................................................................................................181.000.00----------------1.00-------------------
.........................................................................................................................................................................................................TCGGACCTGAAGCTGG....................................................................................................................................................................................................................................................................................................................................................................1611.001.00----------------------1.00-------------
.....................................................................................................................................................................TGCTTGGCTGGGCCTAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------1.00---------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATCTG...............................................................................................................................................................201.000.00--1.00---------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGTAGGCCCGAATCTGC..............................................................................................................................................................211.000.001.00-----------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCACAGACCGCGGACT191.000.00---------------------1.00--------------
..........................................................................................................................................................................................................................................CATGGTGGGGAAGTGAGGC................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------1.00-------
................................................................................................................................................................................................................................................................................................................................................................................................AAGGCAGGGAACCCTG.............................................................................................................................................................................1660.170.17----------------------------------0.17-

Antisense strand
AGGCCGCCGTGGAGCTGGACCAGAGCCTCTTCCGGGGCCGGGTCATCAAGGTGCGCCGGTGCTCCCCAGGTCCAGGAACATGAGCGCAGAGGGGCTGGCCCACTGGCCCTGGGACACACAGCAGCCCCAGCTGGCTCCTCTCTGCACAGCGTGTCTCAGGCACGGTGCTTGGCTGGGCCTGGACAGGATGTGGCGGGACCCTCGGACCTGAAGCTGGGTTTGGTCTGCCAGTGGCATGGTGGGGAAGTGTCCCCTCTCGGGCGGGAGCCCCCTCTGCAGGGGTGCTGGCCGTGACCCCCCCCTCTGCAGGGGTGCTGGCCGTGACCCCCCCCTCTGCAGGGGTGCTGGCCGTGACGGGGTGTCATATGACAGCTATGGTAGGCAAAGGCAGGGAACCCTGTAGGCCCGAATGGTATCCTGAGCCGGGCAGGACCCCATGCTCCGGGGTGGTGGGGGCTGCGGGGGCTGTGAGCTGGGTCTCGGCTGCTCCTTGAGGAGGACTCAAAACAGGCCTTTGCTCCAGGTGCTGCCGAAAAGAACCAACTTCCCTGGGATCAGCTCCACAGACCGCGG
...........................................................................................................................................................................................................................................................................................................................................................................................................((((((((.(((...((.((((((((((.(((......)))..)))).)))))).))))).))))))))......(((((.....)))))........................................................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................390............................................................................................485......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189784SRR189782SRR189786SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................................................................................................................................................................................GGGTGCTGGCCGTGAATAG....................................................................................................................................................................................................................... 193.000.00-3.00----------------------------------
.......................................................................................................................................................................................................................................................................................GGGTGCTGGCCGTGATCCC................................................................................................................................................................................................................................................................................... 193.000.00-3.00----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCAGCACCTGGAG....................................... 1732.002.00-----2.00------------------------------
.................................................................................................................ACACACAGCAGCCCCATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00------------------1.00-----------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGAGCTGATCCCAGGGAAGTTGG...... 2811.001.00----------1.00-------------------------
.........................................................................................................................TGTGCAGAGAGGAGCCAGCTGGGGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................... 2711.001.00------1.00-----------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................CATTCGGGCCTACAGGGTTCCCTGC................................................................................................................................................................. 2511.001.00----------1.00-------------------------
..................................................................................................................................................................................................................................................................GGGCGGGAGCCCCCTCCCG........................................................................................................................................................................................................................................................................................................ 191.000.00-----------1.00------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGTCTCGGCTGCTCCTTGAGGAGGACTCC..................................................................... 331.000.00-------1.00----------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGTGGGGGCTGCGGGGAGG.......................................................................................................... 231.000.00--------1.00---------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGGGGCTGCGGGGGCGC......................................................................................................... 221.000.00--------------------1.00---------------
..................................................................................AGCGCAGAGGGGCTGGTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00---------------1.00--------------------
..................................................GTGCGCCGGTGCTCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 161.000.00-------1.00----------------------------
........................................................................................................................CACGCTGTGCAGAGAGGAGCCAGCTGGGGCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................... 3311.001.00-------------------------1.00----------
........................................................................................................................................................................................................................................................................................................................................................................................CCCTGCCTTTGCCTACC.................................................................................................................................................................................... 1731.001.00-----------------------------0.330.33-0.33---
..................................................................................................................................................................................................................................................................................................................................................................CGGGGTGTCATATGACT.......................................................................................................................................................................................................... 171.000.00--1.00---------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAACCAACTTCATTT...................... 191.000.00--------------------------1.00---------
...............................................................................................................................................................................................................................CTTCCCCACCATGCCACTGGCAGA...................................................................................................................................................................................................................................................................................................................................... 2411.001.00--------------1.00---------------------
........................................................................................................................................................AAGCACCGTGCCTGAGAC................................................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00------------1.00-----------------------
....................CAGAGCCTCTTCCGGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------1.00-----------------------------
........................................................................................................................................................................................................................................................................................................................................................................................TCCCTGCCTTTGCCTACC................................................................................................................................................................................... 1830.330.33-------------------------------0.33----
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCCGCAGCCCCCAC........................................................................................................... 1740.250.25---------------------------------0.25--
..........................................................................................................................................................................................................................................................CCCGCCCGAGAGGGG.................................................................................................................................................................................................................................................................................................................... 1540.250.25-----------0.25------------------------
........................................................................................................................................................................................................................................................................................................................................................................................CCTGCCTTTGCCTACC..................................................................................................................................................................................... 1680.250.25------------0.12----------------------0.12