ID: uc010vms.1_intron_0_0_chr16_74366555_r.3p
GENE: LOC283922(14)
chr16:74366505-74366754-


(1)
AGO2.ip 		(7)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(1)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(27)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGATGTCACATAGGCAGTGCTCCATTCTCGGTGCCTCAGGACCTGGAAGTTAACCACTTTTGGGATGAAATTCTTGCCTTGACGTCTGTCTCCCTCAACAGTAAACAGAGGGTGCAGCACTAATGAAAGGTTTCCCCAGGCGTCCCTCCCTTGACAAGCAATGTGAGTGCCCAGGCTGACTGCTGCCTTTGTCCCTGCAGGAGATGAGCGTGGGCTATGCAAATGGGATCCGGGTGATGAGCATGACGCA
................................................................................................................................((((..((..((((...(((..(((.....)))...)))))))..))..)))).((((..........))))..................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR040012(GSM532897)
G648N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
....................................................................................................................................TCCCCAGGCGTCCCTCGGC...................................................................................................19212.001.004.006.00--------1.00-------------------1.00-------------------------------------------
....................................................................................................................................TCCCCAGGCGTCCCTCGG....................................................................................................18212.001.007.002.001.00----------1.00-1.00----------------------------------------------------------
...................................................................................................................................................................................................................................ATCCGGGTGATGAGCATGACGCA2326.506.50-----1.50-----------1.00----------1.00---0.50---0.500.50-----0.50-0.50-0.50--------------------------
...................................................................................................................................TTCCCCAGGCGTCCCTCGGC...................................................................................................2025.000.501.001.00--1.00-------1.00------------1.00------------------------------------------------
...................................................................................................................................TTCCCCAGGCGTCCCTCGGCG..................................................................................................2125.000.50-------1.00-1.00----1.00----1.00----1.00-------------------------------------------------
...................................................................................................................................TTCCCCAGGCGTCCCTCGG....................................................................................................1923.000.50----1.00------1.00----1.00---------------------------------------------------------
.....................................................................................................................................CCCCAGGCGTCCCTCGGC...................................................................................................1892.440.11-0.22-0.110.11---------------------------0.110.11----------------------0.330.220.22--0.11-0.110.110.110.110.11--0.11-0.110.11
...................................................................................................................................................................................................................................ATCCGGGTGATGAGCATGACG..2122.002.00---------------------------0.50-----------0.50----------0.500.50----------------------
....................................................................................................................................TCCCCAGGCGTCCCTCGTCG..................................................................................................2021.001.00-------------------------------1.00------------------------------------------
...................................................................................................................................................................................................................................ATCCGGGTGATGAGCATTCT...201.000.00---------------------1.00----------------------------------------------------
....................................................................................................................................TCCCCAGGCGTCCCTCG.....................................................................................................1721.001.00---1.00----------------------------------------------------------------------
...................................................................................................................................TTCCCCAGGCGTCCCTCGGA...................................................................................................2021.000.50------------------1.00-------------------------------------------------------
.....................................................................................................................................................................................................................................CCGGGTGATGAGCATGACGTT211.000.00--------------------------1.00-----------------------------------------------
.....................................................................................................................................................CTTGACAAGCAATGTGAG...................................................................................1811.001.00-----------------------------1.00--------------------------------------------
....................................................................................................................................TCCCCAGGCGTCCCTC......................................................................................................1621.001.00--------------------------------------------0.50-0.50---------------------------
.......................ATTCTCGGTGCCTCAGGACCTGG............................................................................................................................................................................................................2311.001.00--------------------1.00-----------------------------------------------------
...............................................................................................................................................................................CTGACTGCTGCCTTTGATTG.......................................................201.000.00-----------------------1.00--------------------------------------------------
...................................................................................................................................TTCCCCAGGCGTCCCTCG.....................................................................................................1821.000.50-1.00------------------------------------------------------------------------
...................................................................................................................................TTCCCCAGGCGTCCCTCTGC...................................................................................................2021.000.50--1.00-----------------------------------------------------------------------
...................................................................................................................................TTCCCCAGGCGTCCCTCGGTT..................................................................................................2121.000.50--------1.00-----------------------------------------------------------------
....................................................................................................................................................................................................................................TCCGGGTGATGAGCATGACGCA2221.001.00-----------------------------------------0.50-------0.50------------------------
......CACATAGGCAGTGCTCCATTC...............................................................................................................................................................................................................................2121.001.00------1.00-------------------------------------------------------------------
...........................................................................................................................................................................CAGGCTGACTGCTGCCTTTGTCCCTGCAGGAGC..............................................331.000.00---1.00----------------------------------------------------------------------
................................................................................................................................................................................................CCCTGCAGGAGATGAGC.........................................1740.750.75---0.50------------------------------0.25---------------------------------------
.....................................................................................................................................CCCCAGGCGTCCCTCGGCG..................................................................................................1990.670.11-------0.11------------------------0.11-0.11---------------------------------0.110.11-0.11--
...................................................................................................................................................................................................................................ATCCGGGTGATGAGCATGACGC.2220.500.50------------------------------------------------0.50-------------------------
............................................................................................................................................................................AGGCTGACTGCTGCCTTTGTCCCTGCAG..................................................2820.500.50--------------------------------------0.50-----------------------------------
.................................................................................................................................................................................................................GTGGGCTATGCAAATG.........................1620.500.50----------------------------------------0.50---------------------------------
........................................................................CTTGCCTTGACGTCTGTCTCCCTC..........................................................................................................................................................2420.500.50------0.50-------------------------------------------------------------------
..............................................................................................................................................................................................................................ATGGGATCCGGGTGATGAGCATGACGCA2820.500.50--0.50-----------------------------------------------------------------------
............................................................................................................................................................................................................................AAATGGGATCCGGGTGATGAGC........2220.500.50--0.50-----------------------------------------------------------------------
......................................................................................................................................................................................................................................CGGGTGATGAGCATGACGCA2020.500.50----------------------------------------------------0.50---------------------
................................................................................................................................................................................................................................GGGATCCGGGTGATGAGCATGACG..2420.500.50------------------------------------------------------0.50-------------------
.............................................................................................................................................................................................................................AATGGGATCCGGGTGATGAGCAT......2320.500.50---------------------------0.50----------------------------------------------
......................................................................................................................................................................................................................................CGGGTGATGAGCATGACGC.1920.500.50---------------------------------0.50----------------------------------------
...................................................................................................................................TTCCCCAGGCGTCCCTC......................................................................................................1720.500.50--0.50-----------------------------------------------------------------------
.....................................................................................................................................................................................................................................CCGGGTGATGAGCATGACGCA2120.500.50------------------------------------------0.50-------------------------------
..............................................................................................................................................................................................GTCCCTGCAGGAGATGA...........................................1730.330.33-------------------------------------------------------0.33------------------
...................................................................................................................................TTCCCCAGGCGTCCCT.......................................................................................................1650.200.20-----------------------------------------------------------0.20--------------
...................................................................................................................................TTCCCCAGGCGTCCCTA......................................................................................................1750.200.20------------------------------------------------------------0.20-------------
.................................................................................................................................................................................................CCTGCAGGAGATGAGC.........................................1670.140.14----------------------------------0.14---------------------------------------
....................................................................................................................................TCCCCAGGCGTCCCT.......................................................................................................1590.110.11--0.11-----------------------------------------------------------------------
.....................................................................................................................................CCCCAGGCGTCCCTC......................................................................................................1590.110.11--------------------------------------------------------------0.11-----------

Antisense strand
AGATGTCACATAGGCAGTGCTCCATTCTCGGTGCCTCAGGACCTGGAAGTTAACCACTTTTGGGATGAAATTCTTGCCTTGACGTCTGTCTCCCTCAACAGTAAACAGAGGGTGCAGCACTAATGAAAGGTTTCCCCAGGCGTCCCTCCCTTGACAAGCAATGTGAGTGCCCAGGCTGACTGCTGCCTTTGTCCCTGCAGGAGATGAGCGTGGGCTATGCAAATGGGATCCGGGTGATGAGCATGACGCA
................................................................................................................................((((..((..((((...(((..(((.....)))...)))))))..))..)))).((((..........))))..................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR040012(GSM532897)
G648N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..................................................................GAAATTCTTGCCTTGGGGA..................................................................................................................................................................... 191.000.00----------------------1.00---------------------------------------------------
.....................................................................................................................................................................................................................................TCATGCTCATCACCCGG.... 1720.500.50-----------------------------------0.50--------------------------------------
........................................................................................................................................................................................TCTCCTGCAGGGACAAAGGC.............................................. 2020.500.50-----------------------------------------------------0.50--------------------