ID: uc010vjn.1_intron_5_0_chr16_67478610_r.5p
GENE: ATP6V0D1(3)
chr16:67487247-67487496-


(3)
BREAST 		(4)
CELL-LINE 		(16)
CERVIX 		(2)
HEART 		(2)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
XRN.ip

Sense strand
ATGAGGAACCATGCCTATGAGCCACTCGCCAGCTTCCTAGACTTCATTACGTGAGTGTGCTTTGTAGCGCCTTCTTCTCTTACCTGGGCAGGATAGCTACACCTGCAGGAGCTGGGTTCAGTGTGGCTTAGGCTAGCTGCCTTCGTGCCTGTGTCAGCTGTCAGAGCTGATGGCAGCTCTGTCAGGCCAGGTGTCCCAGGACCCTACCTTCAGAGTCCTCCCTGACTGTGTGCGTGGTCATTCAACAACC
....................................................(((.(((((....))))).)))........((((((.(((.((((((..(((((....((((....))))...))..))).)))))))))....(((((.((...(((.((((((((....)))))))).))))))))))..))))))..................................................
..................................................51............................................................................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040006(GSM532891)
G601N. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAATCC.............................................219.000.002.00---1.00---1.001.00-1.00-2.00----------1.00------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAAT...............................................196.000.002.00-2.00--1.00-1.00-----------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGTAT...............................................194.000.001.001.001.00-------1.00--------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAATC..............................................204.000.001.001.001.00----------------------1.00-----
.............CCTATGAGCCACTCGCCAGCTT.......................................................................................................................................................................................................................2213.003.00---3.00---------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGTGT...............................................193.000.003.00------------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGATTCC.............................................213.000.001.001.00---1.00-------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGCAT...............................................192.000.00-------1.00--------------1.00--------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGATT...............................................192.000.00-------1.00----1.00------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGATG...............................................192.000.001.00---------------1.00--------------
..................................................GTGAGTGTGCTTTGTAG.......................................................................................................................................................................................1712.002.00---2.00---------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGATTC..............................................202.000.00-1.00----------------1.00------------
..............................AGCTTCCTAGACTTCATTACT.......................................................................................................................................................................................................212.000.00------2.00------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGACT...............................................191.000.00-----1.00-------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGGCT...............................................191.000.001.00------------------------------
..GAGGAACCATGCCTATGAGCC...................................................................................................................................................................................................................................2111.001.00----------------------------1.00--
....................GCCACTCGCCAGCTTCCTAGACTTCATTACTTAC....................................................................................................................................................................................................341.000.00-------------------1.00-----------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAT................................................181.000.00----------1.00--------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGTATT...............................................191.000.00--------1.00----------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGGGT...............................................191.000.001.00------------------------------
...............................................................................................................................................................................................................CTTCAGAGTCCTCCCTGACTGTGTGCGTGGTC...........3211.001.00--------------------------1.00----
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAATCA.............................................211.000.00----1.00--------------------------
....................................................................................................................TTCAGTGTGGCTTAGGTACG..................................................................................................................201.000.00--------------1.00----------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAATA..............................................201.000.00-1.00-----------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGGTT...............................................191.000.001.00------------------------------
.........................................................................................................................................................................................GCCAGGTGTCCCAGGAAG...............................................181.000.001.00------------------------------
.......................................................................................................................................................................................AGGCCAGGTGTCCCAGGAATA..............................................211.000.00---------1.00---------------------
...AGGAACCATGCCTATGAG.....................................................................................................................................................................................................................................1811.001.00------1.00------------------------
..................................................................................CCTGGGCAGGATAGCTGGCG....................................................................................................................................................201.000.00---------------1.00---------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAATCG.............................................211.000.00-1.00-----------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGTCGT...............................................191.000.00-1.00-----------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGAAAT...............................................191.000.00---------------------------1.00---
.......................................................................................................................AGTGTGGCTTAGGCTAGCCGCC.............................................................................................................221.000.00-----------------------1.00-------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAAGCC.............................................211.000.00------------1.00------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGCTT...............................................191.000.00--1.00----------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGGATC..............................................201.000.00----1.00--------------------------
.........................................................................................................................................................................................................................CTCCCTGACTGTGTGCGTGGTC...........2211.001.00---------------------1.00---------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGTAG...............................................191.000.001.00------------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGACTC..............................................201.000.00----1.00--------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAAA...............................................191.000.001.00------------------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAAGC..............................................201.000.00-----------1.00-------------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAAG...............................................191.000.00-----1.00-------------------------
...AGGAACCATGCCTATGAGCC...................................................................................................................................................................................................................................2011.001.00-----------------1.00-------------
........................................................................................................................................................................................GGCCAGGTGTCCCAGGAATAA.............................................211.000.00--1.00----------------------------

Antisense strand
ATGAGGAACCATGCCTATGAGCCACTCGCCAGCTTCCTAGACTTCATTACGTGAGTGTGCTTTGTAGCGCCTTCTTCTCTTACCTGGGCAGGATAGCTACACCTGCAGGAGCTGGGTTCAGTGTGGCTTAGGCTAGCTGCCTTCGTGCCTGTGTCAGCTGTCAGAGCTGATGGCAGCTCTGTCAGGCCAGGTGTCCCAGGACCCTACCTTCAGAGTCCTCCCTGACTGTGTGCGTGGTCATTCAACAACC
....................................................(((.(((((....))))).)))........((((((.(((.((((((..(((((....((((....))))...))..))).)))))))))....(((((.((...(((.((((((((....)))))))).))))))))))..))))))..................................................
..................................................51............................................................................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040006(GSM532891)
G601N. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
..................................................................GCGCCTTCTTCTCTTG........................................................................................................................................................................ 161.000.00--------------------1.00----------
....................................................................CCAGGTAAGAGAAGAAGGC................................................................................................................................................................... 1920.500.50-----------------------------0.50-
....................................................................GGTAAGAGAAGAAGGC...................................................................................................................................................................... 1650.200.20------------------------------0.20