ID: uc010vee.1_intron_4_0_chr16_29923371_r.3p
GENE: (2)
chr16:29923321-29923570-


(2)
AGO2.ip
(1)
B-CELL
(6)
BREAST
(13)
CELL-LINE
(2)
HEART
(2)
HELA
(3)
LIVER
(4)
OTHER
(18)
SKIN
(1)
UTERUS

Sense strand
GAAGCAGCAAGGTGTCCGTGGGACCAAGGCCCAGCAAGCAAAGGGAGAGTGGCAGAGAGGCTGGCGGAGCTTGGAGCCTGCAGAGCCCTGCGGACCACTGAGGAGTCTGGAGTTGTTCCCAACCAGCTTTTGAAGGCTTTTAAGTGGGGGAGTACGTGGCCTTTGGTTGTGCTGTTAACCACCTTCCGCTTCTTCCCCAGCAAAAAAGGGAGACGCTGTCCCCGCTGTGCCTCATCCCCATGGTGACATC
...................................................((((...((((.((((.((.....))))))..)))))))).....(((.((((((((.((((((........))))))....)))))))).)))(((((((...((((....((((((......))))))....))))..)))))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR029131(GSM416760)
MCF7. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR037935(GSM510473)
293cand3. (cell line)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAGA.................................................22119.005.00--3.003.00--1.00--1.00-2.001.00-1.001.00------1.00----1.00-----1.00------1.00--1.00--1.00---
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAGT.................................................2219.005.00-----1.00-2.00---------------1.001.00-1.00----1.00------1.001.00----------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAG..................................................2115.005.004.00---------------------------------1.00---------------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAGTT................................................2313.005.00---------1.00---------------1.00--1.00---------------------
................................................................................................................................................................CTTTGGTTGTGCTGTTATTG......................................................................202.000.00--------2.00-----------------------------------------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAGTA................................................2312.005.00--------------------1.00----------------1.00------------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAGC.................................................2212.002.00-2.00------------------------------------------------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCA...................................................2011.001.00------------------1.00-------------------------------
.....................................................................................................................................................................................................CAGCAAAAAAGGGAGTTA...................................181.000.00-----------------------------------1.00--------------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAAT.................................................2211.001.001.00-------------------------------------------------
.........................................................................................................................................................................................................AAAAAAGGGAGACGCTGTCC.............................2011.001.00----------1.00---------------------------------------
....................................................................................................................................................................................ACCTTCCGCTTCTTCCCCAGT.................................................211.000.00-----1.00--------------------------------------------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCATA.................................................2211.001.00-------------------1.00------------------------------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAGAT................................................2311.005.001.00-------------------------------------------------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCC.....................................................1811.001.00-----------------------------------------------1.00--
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAGCTT...............................................2411.002.00------------------------------------------------1.00-
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAGAA................................................2311.005.00-----------------------------------------1.00--------
......................................................GAGAGGCTGGCGGAGGCGT.................................................................................................................................................................................191.000.00-------------1.00------------------------------------
......................................................GAGAGGCTGGCGGAGCAAG.................................................................................................................................................................................191.000.00-1.00------------------------------------------------
.......................................................................................................................................................................................TTCCGCTTCTTCCCCAG..................................................1711.001.00--------------------------------------------1.00-----
................................................................................................................................................TGGGGGAGTACGTGGCCTTTGGT...................................................................................2311.001.00------1.00-------------------------------------------
.....................................................................................................................................................................GTTGTGCTGTTAACCCTGC..................................................................191.000.00---------------------------------------------1.00----
..........................................................................................................................................................................................................................TCCCCGCTGTGCCTCCA...............171.000.00-----------------1.00--------------------------------
......................................................................................................................................................................TTGTGCTGTTAACCACCTTCCGCTTCATA.......................................................291.000.00----------1.00---------------------------------------
.....................................................................................................................................................................GTTGTGCTGTTAACCAC....................................................................1711.001.00----1.00---------------------------------------------
...................................................................................................................................................................................CACCTTCCGCTTCTTCCCCAATAA...............................................2411.001.00----------------1.00---------------------------------
..............................CCAGCAAGCAAAGGGAGAGTGGC.....................................................................................................................................................................................................2311.001.00------------------------------------1.00-------------
.................................................................GGAGCTTGGAGCCTGCAGAGCC...................................................................................................................................................................2211.001.00------------------------------1.00-------------------
.............................................................TGGCGGAGCTTGGAGCC............................................................................................................................................................................1711.001.00----1.00---------------------------------------------

Antisense strand
GAAGCAGCAAGGTGTCCGTGGGACCAAGGCCCAGCAAGCAAAGGGAGAGTGGCAGAGAGGCTGGCGGAGCTTGGAGCCTGCAGAGCCCTGCGGACCACTGAGGAGTCTGGAGTTGTTCCCAACCAGCTTTTGAAGGCTTTTAAGTGGGGGAGTACGTGGCCTTTGGTTGTGCTGTTAACCACCTTCCGCTTCTTCCCCAGCAAAAAAGGGAGACGCTGTCCCCGCTGTGCCTCATCCCCATGGTGACATC
...................................................((((...((((.((((.((.....))))))..)))))))).....(((.((((((((.((((((........))))))....)))))))).)))(((((((...((((....((((((......))))))....))))..)))))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR029131(GSM416760)
MCF7. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR037935(GSM510473)
293cand3. (cell line)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
............................................GAGAGTGGCAGAGAGGC............................................................................................................................................................................................. 171.000.00------------------------------------------1.00-------
...........................................................GCTGGCGGAGCTTGGGCAG............................................................................................................................................................................ 191.000.00---------------------1.00----------------------------
...................................................................................................................................................................................CACCTTCCGCTTCTTAGC..................................................... 181.000.00-------------------------------------------------1.00
...........................................................................................................TGGAGTTGTTCCCAACAAC............................................................................................................................ 191.000.00-----------------------------1.00--------------------
....................................................................................................................TCCCAACCAGCTTTTGGG.................................................................................................................... 181.000.00--------------------------------1.00-----------------
............................................................................................................................................................................................................AAAGGGAGACGCTGTGCTG........................... 191.000.00-1.00------------------------------------------------
..................................................................................................................................................................................................CCTTTTTTGCTGGGG......................................... 1560.170.17----0.17---------------------------------------------