ID: uc010uzr.1_intron_7_0_chr16_15212912_r.5p
GENE: (1)
chr16:15215501-15215750-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
B-CELL 		(1)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(2)
SKIN

Sense strand
GGATTACAGGCGTGAGCCACCGCGCCTGGCCAAAATATATAACCTTAAGTGTAAGTTTACTAACTTTGGAAAGTACATACACCAGCATAAACCAACCCCCTTTCAAGATCTACATTATTTTATTTATTTATTTATTTATTTGAGACAGTTTCTCCCTTGTTGCTGAGGCTGGAGTGCAATGGGCCAATATCAGCTCACCGCAACCTCTGCTTCCCAGGTTCGAGCGATTCTCCTGCCTCAGCCTCCCGAG
..........................................................................................................(((................................((((.....)))).((..((((............))))..)).....)))...........................................................
......................................................................................................103......................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040034(GSM532919)
G001N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM956925PAZD5SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		TAX577742(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTG................................................................................................................31697.000.00260.00251.00102.0068.0016.00-------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTTG...............................................................................................................32272.000.0083.0089.0062.0036.002.00-------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTG....................................................................................................................27133.000.0046.0044.0018.0022.003.00-------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTG................................................................................................................3098.000.0047.0041.004.006.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTATTTG............................................................................................................35980.0080.0027.3329.2212.6710.78--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTACTTG............................................................................................................3561.000.00-1.0039.0021.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTTG...................................................................................................................2853.000.0010.0015.0013.0012.003.00-------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTTTTG.............................................................................................................3446.000.0014.0016.0010.006.00--------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTTG...............................................................................................................3038.000.0021.0014.002.001.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTG........................................................................................................................2333.000.003.0015.005.008.002.00-------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTATCTG............................................................................................................3528.000.00--17.0011.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTTG...............................................................................................................3126.000.008.008.004.006.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTAG...............................................................................................................3224.000.004.003.0011.006.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTTTG..............................................................................................................3322.000.007.005.002.008.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTTTTT.................................................................................................................3019.000.008.009.00-1.001.00-------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTTTTG.................................................................................................................3018.000.004.009.004.001.00--------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTG....................................................................................................................2518.000.009.007.001.001.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTATTTG............................................................................................................34914.5614.567.674.891.001.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTG....................................................................................................................2614.000.005.008.001.00---------------------------
.................................................................................................................ATTATTTTATTTATTTATTTATTTTCG..............................................................................................................2712.000.002.006.002.002.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTTTTG.....................................................................................................................2611.000.005.004.001.001.00--------------------------
.....................................................................................................................TTTTATTTATTTATTTATTTATTTCTAG.........................................................................................................2811.000.00--5.006.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTATTTAG...........................................................................................................3510.000.001.007.001.001.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTTA...............................................................................................................3210.000.002.003.003.002.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTTG...................................................................................................................279.000.004.004.001.00---------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTATTTG............................................................................................................3398.008.004.002.441.110.44--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTCTG...............................................................................................................328.000.00--4.004.00--------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTATTTAG...........................................................................................................348.000.004.004.00----------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATCTTG...............................................................................................................327.000.00-1.006.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTTG.......................................................................................................................246.000.001.002.002.001.00--------------------------
...............................................................................................................ACATTATTTTATTTATTTATTTATTTATTTTTG..........................................................................................................335.000.00--2.002.001.00-------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTCG...............................................................................................................325.000.00--3.002.00--------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTATTCTG...........................................................................................................275.000.00-1.002.002.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTACTTG................................................................................................................315.000.001.00-1.001.002.00-------------------------
..................................................................................................................TTATTTTATTTATTTATTTATTTATCTAG...........................................................................................................295.000.00--4.001.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATCTG................................................................................................................315.000.00--4.00-1.00-------------------------
.....................................................................................................................TTTTATTTATTTATTTATTTATTCATG..........................................................................................................274.000.001.001.001.001.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTACTTG............................................................................................................344.000.00--3.001.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTG........................................................................................................................224.000.001.002.001.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTGAG..............................................................................................................334.000.00----4.00-------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTACTTG....................................................................................................................274.000.00--1.00-2.001.00------------------------
...................................................................................................................................................................TGAGGCTGGAGTGCAATGGGCGACC..............................................................253.000.00-----3.00------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTAG...................................................................................................................283.000.002.00-1.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTTT...................................................................................................................283.000.00-1.002.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTTCTG.............................................................................................................343.000.00--2.001.00--------------------------
...................................................................................................................TATTTTATTTATTTATTTATTTATTCTAG..........................................................................................................293.000.00--2.001.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTTTTG.................................................................................................................293.000.003.00-----------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTATCTTG...........................................................................................................353.000.00---3.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTTTTT.....................................................................................................................263.000.001.001.00-1.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTTTTT.................................................................................................................293.000.003.00-----------------------------
...................................................................................................................TATTTTATTTATTTATTTATTTATTATTG..........................................................................................................292.000.001.001.00----------------------------
...........................................................................................................ATCTACATTATTTTATTTATCTG........................................................................................................................232.000.00--1.001.00--------------------------
.....................................................................................................................TTTTATTTATTTATTTATTTATTTCCAG.........................................................................................................282.000.00--1.001.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTCTTG.............................................................................................................342.000.001.00--1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTT....................................................................................................................272.000.001.00--1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATCTTA...............................................................................................................322.000.00--1.001.00--------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTACATG............................................................................................................262.000.00--2.00---------------------------
.................................................................................................................ATTATTTTATTTATTTATTTATTTATCTAG...........................................................................................................302.000.00--2.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTCTG...................................................................................................................282.000.00----2.00-------------------------
.....................................................................................CATAAACCAACCCCCTTCAAG................................................................................................................................................212.000.00--2.00---------------------------
....................................................................................................................ATTTTATTTATTTATTTATTCATG..............................................................................................................242.000.00--1.001.00--------------------------
.............................................................................................................................................................................................TCAGCTCACCGCAACCTCTGGACG.....................................242.000.00------2.00-----------------------
...................................................................................................................TATTTTATTTATTTATTTATTTATTCAAG..........................................................................................................292.000.00--1.001.00--------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTATTTCTAG.........................................................................................................292.000.00--1.001.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTCG................................................................................................................312.000.00--2.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTT........................................................................................................................232.000.00--2.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTCAG...............................................................................................................322.000.00--2.00---------------------------
..................................................................................................................TTATTTTATTTATTTATTTATTTATTTCTGG.........................................................................................................312.000.00-----2.00------------------------
..........................................................................................................................................................................................ATATCAGCTCACCGCAACCTCTGCTTCCCGGGC...............................332.000.00-----2.00------------------------
..................................................................................................................TTATTTTATTTATTTATTTATTTCTCG.............................................................................................................272.000.001.00-1.00---------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTCG...............................................................................................................312.000.00--2.00---------------------------
..............................................................................................................TACATTATTTTATTTATTTATTTATTTATCTTG...........................................................................................................332.000.00--2.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTTTT..................................................................................................................292.000.002.00-----------------------------
...........................................................................................................ATCTACATTATTTTATTTTTTT.........................................................................................................................222.000.00-1.00-1.00--------------------------
............................................................................................................................................................................................ATCAGCTCACCGCAACCTCTGCTTCCCAGGC...............................312.000.00-----2.00------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTATTTTT...........................................................................................................342.000.00-2.00----------------------------
...........................................................................................................ATCTACATTATTTTATTTACTTG........................................................................................................................232.000.00--1.001.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTT....................................................................................................................262.000.00-2.00----------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTATCCG............................................................................................................352.000.00--2.00---------------------------
.................................................................................................................ATTATTTTATTTATTTATTTATTTCG...............................................................................................................262.000.00--1.00--1.00------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTTTG......................................................................................................................252.000.00-1.001.00---------------------------
.............................................................................................................................................................TGTTGCTGAGGCTGGAGTGGAGG......................................................................232.000.00------------------1.00-1.00---------
...................................................................................................................TATTTTATTTATTTATTTATTTATTTCTCG.........................................................................................................302.000.00---2.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTATTCTG...........................................................................................................352.000.00--2.00---------------------------
.................................................................................................................ATTATTTTATTTATTTATTTATTCTCG..............................................................................................................271.000.00--1.00---------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTATTCATG..........................................................................................................281.000.001.00-----------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTATCCTG...........................................................................................................271.000.00--1.00---------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTATGTAG...........................................................................................................341.000.001.00-----------------------------
...............................................................................................................ACATTATTTTATTTATTTATTTATTTATTCTTG..........................................................................................................331.000.00--1.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATCTG....................................................................................................................271.000.00--1.00---------------------------
...................................................................................................................TATTTTATTTATTTATTTATTTATTTCTTG.........................................................................................................301.000.00-----1.00------------------------
............................................................................................................TCTACATTATTTTATTTATTTTTTT.....................................................................................................................251.000.001.00-----------------------------
................................................................................................................CATTATTTTATTTATTTATTTATTTATTTATTG.........................................................................................................331.000.001.00-----------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTATTAG............................................................................................................351.000.00---1.00--------------------------
.................................................................................................................ATTATTTTATTTATTTATTCTG...................................................................................................................221.000.00--1.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTCG....................................................................................................................271.000.00--1.00---------------------------
................................................................................................................CATTATTTTATTTATTTATTTATTTATCTG............................................................................................................301.000.00----1.00-------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTTTTG.............................................................................................................321.000.001.00-----------------------------
.............................................................................................................................................................................................TCAGCTCACCGCAACCTCTGTT.......................................221.000.00-----------------1.00------------
............................................................................................................................................................................................ATCAGCTCACCGCAACCTCTGCTCCC....................................261.000.00-----1.00------------------------
.................................................................................................................................................................................................CTCACCGCAACCTCTGCTTCCCGTG................................251.000.00-----1.00------------------------
....................................................................................................................................................................................................ACCGCAACCTCTGCTTCCCAGGTCCG............................261.000.00------1.00-----------------------
....................................................................................................................ATTTTATTTATTTATTTATTTACG..............................................................................................................241.000.001.00-----------------------------
...................................................................................................................TATTTTATTTATTTATTTATTTATTAAT...........................................................................................................281.000.00--1.00---------------------------
..................................................................................................................TTATTTTATTTATTTATTTATTTACAG.............................................................................................................271.000.001.00-----------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTATTCTAG..........................................................................................................281.000.00--1.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTCG........................................................................................................................231.000.00--1.00---------------------------
...............................................................................................................ACATTATTTTATTTATTTATTTATTTATTTTTTG.........................................................................................................341.000.00--1.00---------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTATCTGG...........................................................................................................341.000.001.00-----------------------------
...........................................................................................................ATCTACATTATTTTATTCAT...........................................................................................................................201.000.00--1.00---------------------------
..............................................................................................................TACATTATTTTATTTATTTATTTATTTTTG..............................................................................................................301.000.00--1.00---------------------------
....................................................................................................................ATTTTATTTATTTATTTATTCAAA..............................................................................................................241.000.00-1.00----------------------------
...................................................................................................................TATTTTATTTATTTATTTCCG..................................................................................................................211.000.00---1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATATAT.......................................................................................................................241.000.00--1.00---------------------------
.......AGGCGTGAGCCACCGCGCCTGGAAGC.........................................................................................................................................................................................................................261.000.00-----1.00------------------------
...............................................................................................................ACATTATTTTATTTATTTATTTATTTATC..............................................................................................................291.000.00-----1.00------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTTTTG.............................................................................................................331.000.001.00-----------------------------
.....................................................................................................................TTTTATTTATTTATTTATTTATTTCTAT.........................................................................................................281.000.00--1.00---------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTTG...................................................................................................................261.000.001.00-----------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTC.....................................................................................................................261.000.00----1.00-------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTACCTG............................................................................................................261.000.00--1.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTACCTG............................................................................................................351.000.00--1.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTCG...................................................................................................................281.000.00--1.00---------------------------
............................................................................................................................................................TTGTTGCTGAGGCTGGAGTGCAGCGG....................................................................261.000.00-----1.00------------------------
...................................................................................................................TATTTTATTTATTTATTTATTTCAAT.............................................................................................................261.000.001.00-----------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTAC...................................................................................................................281.000.00----1.00-------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTC................................................................................................................301.000.001.00-----------------------------
................................................................................................................CATTATTTTATTTATTTATTTACTTG................................................................................................................261.000.00---1.00--------------------------
................................................................................................................CATTATTTTATTTATTTATTTATTTAC...............................................................................................................271.000.00---1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTCCTT..................................................................................................................291.000.00---1.00--------------------------
.............................................................................................................................................................................................TCAGCTCACCGCAACCTCTGCTCCCC...................................261.000.00------1.00-----------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTTTTT.................................................................................................................281.000.001.00-----------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTATTAG............................................................................................................331.000.00---1.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATCTTG...............................................................................................................311.000.00--1.00---------------------------
...............................................................................................................................................................................................AGCTCACCGCAACCTCTGCTTCCGAG.................................261.000.00-----1.00------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTATCT.............................................................................................................321.000.00-1.00----------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTTA...............................................................................................................301.000.001.00-----------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATCTAC...............................................................................................................321.000.00----1.00-------------------------
................................................................................................................CATTATTTTATTTATTTATTTATTTATTCTA...........................................................................................................311.000.00---1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTCCG...............................................................................................................321.000.00---1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTATC..............................................................................................................331.000.00--1.00---------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTATCAAG...........................................................................................................271.000.00--1.00---------------------------
..................................................................................................................TTATTTTATTTATTTATTTATTTATCTAA...........................................................................................................291.000.00---1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTCTT...............................................................................................................321.000.00----1.00-------------------------
...............................................................................................................ACATTATTTTATTTATTTACTTG....................................................................................................................231.000.00---1.00--------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTTTG..................................................................................................................271.000.00---1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTAG................................................................................................................311.000.001.00-----------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTATTTTA...........................................................................................................351.000.001.00-----------------------------
.................................................................................................................ATTATTTTATTTATTTATTTATTTATTTGTTT.........................................................................................................321.000.00----1.00-------------------------
.............................................................................................................................................................................................TCAGCTCACCGCAACCTCTGCTTCCCCGGG...............................301.000.00------1.00-----------------------
....................................................................................................................ATTTTATTTATTTATTTATTTATTTCTGG.........................................................................................................291.000.00------1.00-----------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTTTTA.............................................................................................................341.000.001.00-----------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTACTTG............................................................................................................331.000.00---1.00--------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTCTTG..............................................................................................................321.000.001.00-----------------------------
...............................................................................................................................................................................................AGCTCACCGCAACCTTAC.........................................181.000.00------1.00-----------------------
...................................................................................................................TATTTTATTTATTTATTTATTTATCTCG...........................................................................................................281.000.00--1.00---------------------------
.............................................................................................................CTACATTATTTTATTTATTTTG.......................................................................................................................221.000.001.00-----------------------------
.....ACAGGCGTGAGCCACCGCGCCTGGCCAACCGC.....................................................................................................................................................................................................................321.000.00-----1.00------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTTTG..................................................................................................................291.000.00--1.00---------------------------
...............................................................................................................ACATTATTTTATTTATTTATTTTG...................................................................................................................241.000.00-1.00----------------------------
.....................................................................................................................TTTTATTTATTTATTTATTTATTCCG...........................................................................................................261.000.00---1.00--------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTACCTT............................................................................................................261.000.00------1.00-----------------------
..........................................................................................................................................................................................................................TTCGAGCGATTCTCCTGCCT............2001.001.00---------------------1.00--------
..............................................................................................................TACATTATTTTATTTATTTATTTATTTATCTG............................................................................................................321.000.00--1.00---------------------------
.................................................................................................................ATTATTTTATTTATTTATTTATTTATTCAG...........................................................................................................301.000.001.00-----------------------------
..........................................................................................................................................................................................ATATCAGCTCACCGCAACCTCTGA........................................241.000.00------1.00-----------------------
.................................................................................................................................................................................................CTCACCGCAACCTCTGCTTCCGGGG................................251.000.00-----1.00------------------------
...................................................................................................................................................................TGAGGCTGGAGTGCAAAA.....................................................................181.000.00--------------1.00---------------
..............................................................................................................................................................................................................................AGCGATTCTCCTGCCTCAGCCTGGTG..261.000.00-----1.00------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATATTG...................................................................................................................281.000.001.00-----------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTATTATTG..........................................................................................................281.000.001.00-----------------------------
...................................................................................................................TATTTTATTTATTTATTTATTTATTTCTAG.........................................................................................................301.000.00---1.00--------------------------
.......................................................................................................................................TTATTTGAGACAGTTAG..................................................................................................171.000.00----------------1.00-------------
.............................................................................................................................................................................................TCAGCTCACCGCAACCTCTTCCC......................................231.000.00-----1.00------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTCTTG.................................................................................................................301.000.00---1.00--------------------------
...................................................................................................................TATTTTATTTATTTATTTATTTATCC.............................................................................................................261.000.00-----1.00------------------------
............................................................................................................TCTACATTATTTTATTTATTTTTTG.....................................................................................................................251.000.00-1.00----------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTTTTC.....................................................................................................................261.000.00-1.00----------------------------
.....ACAGGCGTGAGCCACCGCGCGGCA.............................................................................................................................................................................................................................241.000.00-----1.00------------------------
.....................................................................................................................TTTTATTTATTTATTTATTTATTCACG..........................................................................................................271.000.00--1.00---------------------------
...................................................................................................................TATTTTATTTATTTATTTATTTCGCG.............................................................................................................261.000.00-----1.00------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTCTG...............................................................................................................301.000.00---1.00--------------------------
.......................................................................................................................................................................................................GCAACCTCTGCTTCCCAGGAATA............................231.000.00---------------------------1.00--
...............................................................................................................ACATTATTTTATTTATTTATTTATTTACTTG............................................................................................................311.000.00---1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATCTAT...................................................................................................................281.000.00----1.00-------------------------
...................................................................................................................................................................................................................TCCCAGGTTCGAGCGATCA....................191.000.00-------1.00----------------------
.....ACAGGCGTGAGCCACCGCGCCTGGGTC..........................................................................................................................................................................................................................271.000.00-----1.00------------------------
..................................................................................................................TTATTTTATTTATTTATTTATTTATTTCAT..........................................................................................................301.000.00--1.00---------------------------
..................................................................................................................TTATTTTATTTATTTATTCTAG..................................................................................................................221.000.00---1.00--------------------------
................................................................................................................................................................................................GCTCACCGCAACCTCTGCTTCCCCGG................................261.000.00------1.00-----------------------
...............................................................................................................ACATTATTTTATTTATTTATTTATTTATA..............................................................................................................291.000.00-----1.00------------------------
............................................................................................................................................................TTGTTGCTGAGGCTGGAGTGCAACG.....................................................................251.000.00--1.00---------------------------
...............................................................................................................ACATTATTTTATTTATTTATTTATTTTTTC.............................................................................................................301.000.00------1.00-----------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTAG...............................................................................................................301.000.00--1.00---------------------------
.....ACAGGCGTGAGCCACCGCGCCTCGGC...........................................................................................................................................................................................................................261.000.00-----1.00------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTA.................................................................................................................301.000.001.00-----------------------------
...............................................................................................................ACATTATTTTATTTATTTATTTATCCGG...............................................................................................................281.000.00-----1.00------------------------
...............................................................................................................................................................................................AGCTCACCGCAACCTCTGCTTCCCAGGCTCG............................311.000.00-----1.00------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTATTTATATTA...........................................................................................................351.000.00--1.00---------------------------
.............................................................................................................CTACATTATTTTATTTATTTG........................................................................................................................211.000.001.00-----------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATATG................................................................................................................311.000.00-1.00----------------------------
...............................................................................................................ACATTATTTTATTTATTTATTTATTTAG...............................................................................................................281.000.00-1.00----------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTTTTG.................................................................................................................281.000.001.00-----------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTAG...................................................................................................................261.000.001.00-----------------------------
...........................................................................................................ATCTACATTATTTTATTTATTATTT......................................................................................................................251.000.001.00-----------------------------
...................................................................................................................TATTTTATTTATTTATTTATTTATCAAG...........................................................................................................281.000.00--1.00---------------------------
................................................................................................................................................................TGCTGAGGCTGGAGTGCA........................................................................1801.001.00------------------------1.00-----
....................................................................................................................ATTTTATTTATTTATTTATTTACTTC............................................................................................................261.000.00------1.00-----------------------
.....ACAGGCGTGAGCCACCGCGCCTGGGTGG.........................................................................................................................................................................................................................281.000.00-----1.00------------------------
..............................................................................................................TACATTATTTTATTTATTTATTTG....................................................................................................................241.000.00-1.00----------------------------
...................................................................................................................TATTTTATTTATTTATTTATATAG...............................................................................................................241.000.00--1.00---------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTATTG.............................................................................................................341.000.00-1.00----------------------------
.....ACAGGCGTGAGCCACCGCGCCTGGGGGG.........................................................................................................................................................................................................................281.000.00-----1.00------------------------
....................................................................................................................................................................................................ACCGCAACCTCTGCTTCCCGTG................................221.000.00------1.00-----------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATTTATTGG............................................................................................................351.000.00---1.00--------------------------
...........................................................................................................ATCTACATTATTTTATTTATTTTT.......................................................................................................................241.000.00---1.00--------------------------
....................................................................................................................ATTTTATTTATTTATTTATTTATCTG............................................................................................................261.000.00---1.00--------------------------
.........................................................................................................................................................CCCTTGTTGCTGAGGCTGGAGTGCAATGGTGCG................................................................331.000.00-------1.00----------------------
...........................................................................................................ATCTACATTATTTTATTTATTTATTTATCTCT...............................................................................................................321.000.00----1.00-------------------------
...............................................................................................................ACATTATTTTATTTATTTATTCTTG..................................................................................................................251.000.00--1.00---------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTATG...................................................................................................................271.000.00--1.00---------------------------
............................................................................................................TCTACATTATTTTATTTATTTATTTTA...................................................................................................................271.000.00--1.00---------------------------
...............................................................................................................ACATTATTTTATTTATTCAT.......................................................................................................................201.000.00-----1.00------------------------
...............................................................................................................ACATTATTTTATTTATTTACG......................................................................................................................211.000.00---1.00--------------------------
.............................................................................................................CTACATTATTTTATTTATTTATTTATTTATCTG............................................................................................................331.000.00-1.00----------------------------
.................................................................................................................ATTATTTTATTTATTTATGTTG...................................................................................................................221.000.00---1.00--------------------------
....TACAGGCGTGAGCCACCGCGCCTGGCCAACGA......................................................................................................................................................................................................................321.000.00-----1.00------------------------
..............................................................................................................TACATTATTTTATTTATTTATTTATTTATTTG............................................................................................................3290.440.440.220.11-0.11--------------------------
............................................................................................................................................................TTGTTGCTGAGGCTGGAGTGCAATGGGCCAA...............................................................3130.330.33-----------------------------0.33

Antisense strand
GGATTACAGGCGTGAGCCACCGCGCCTGGCCAAAATATATAACCTTAAGTGTAAGTTTACTAACTTTGGAAAGTACATACACCAGCATAAACCAACCCCCTTTCAAGATCTACATTATTTTATTTATTTATTTATTTATTTGAGACAGTTTCTCCCTTGTTGCTGAGGCTGGAGTGCAATGGGCCAATATCAGCTCACCGCAACCTCTGCTTCCCAGGTTCGAGCGATTCTCCTGCCTCAGCCTCCCGAG
..........................................................................................................(((................................((((.....)))).((..((((............))))..)).....)))...........................................................
......................................................................................................103......................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040034(GSM532919)
G001N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM956925PAZD5SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		TAX577742(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.......................................................................................................................................................................................................GCAACCTCTGCTTCCCAGGTTCGATG......................... 262.000.00-----2.00------------------------
........................................................................................................................TATTTATTTATTTATTTATTTGAGATCCG..................................................................................................... 292.000.00--------2.00---------------------
................CCACCGCGCCTGGCCAAAAT...................................................................................................................................................................................................................... 202.000.00---------2.00--------------------
.......................................................................................................................................................................................................GCAACCTCTGCTTCCCAGGTCACG........................... 242.000.00------2.00-----------------------
......................................................................................................................................................................................................CGCAACCTCTGCTTCCCAGGTAG............................. 231.000.00-----1.00------------------------
..............................................................................................................................................................................................CAGCTCACCGCAACCTCTGCTTCCCAGGTGGAC........................... 331.000.00------1.00-----------------------
.....................................................................................................................................................................................................................CCAGGTTCGAGCGATTCATTG................ 211.000.00--------------------------1.00---
...........................................................................................................ATCTACATTATTTTATAAGG........................................................................................................................... 201.000.00-------------------------1.00----
........................................................................................................................................................................................................AACCTGGGAAGCAGAGGTTG.............................. 2001.001.00----------1.00-------------------
.......................................................................................................................................................................................................................GGAGGCTGAGGCAGGAGAATCGCTCGAACCT.... 3101.001.00-------------1.00----------------
......................................................................................................................................................................................................CGCAACCTCTGCTTCCCAGGTTAGCC.......................... 261.000.00-----1.00------------------------
..................................................................................................................................................................................................................TTCCCAGGTTCGAGCGATTCTCCTAC.............. 261.000.00----1.00-------------------------
......CAGGCGTGAGCCACCGCGACA............................................................................................................................................................................................................................... 211.000.00----------------------------1.00-
...............................................................................................................................................................................................AGCTCACCGCAACCTCTTT........................................ 191.000.00------------1.00-----------------
...................CCGCGCCTGGCCAAAATCTC................................................................................................................................................................................................................... 201.000.00-----1.00------------------------
......................................................................................................................................................................................................................CAGGTTCGAGCGATTCTCCTCGAG............ 241.000.00------1.00-----------------------
............................................................................................................................................................................................................................CGAGCGATTCTCCTGCCTCAGG........ 221.000.00-------------------1.00----------
................................................................................................................................................................................................................GCTTCCCAGGTTCGAGCGATTCTCG................. 251.000.00-----1.00------------------------
.......................................................................................TAAACCAACCCCCTTCA.................................................................................................................................................. 171.000.00-----------------------1.00------
...............................................................................................................................................................................................AGCTCACCGCAACCTTTGG........................................ 191.000.00---------------1.00--------------
.......................................................................................................................................................................................................GCAACCTCTGCTTCCCAGGTTCGAGAGCG...................... 291.000.00------1.00-----------------------
.......................................................................................................................................................................................................GCAACCTCTGCTTCCCAGGTTCACG.......................... 251.000.00-----1.00------------------------
...................................................................................................................................................................................................................TCCCAGGTTCGAGCGATTCTCCTGCCTCG.......... 291.000.00-----1.00------------------------
..........................................................................................................................................................................................................................GAGGCTGAGGCAGGAGAATCGCTCGAA..... 2701.001.00----------1.00-------------------
................................................................................................................................................................................................GCTCACCGCAACCTCTGCTTCCCACAGG.............................. 281.000.00------1.00-----------------------
...........GTGAGCCACCGCGCCTGGCCAAACCCC.................................................................................................................................................................................................................... 271.000.00------1.00-----------------------
........................................................................................................................................................................................................................GGTTCGAGCGATTCTCCTGCATG........... 231.000.00----------------------1.00-------
......................................................................................................................................................................................................CGCAACCTCTGCTTCCCAGGTAGCC........................... 251.000.00------1.00-----------------------
...........................................................................................................................................................................................................CCTCTGCTTCCCAGGTTCGACTA........................ 231.000.00------1.00-----------------------
....................................................................................................................................................................................................................CCCAGGTTCGAGCGATTCTCCTGCCTCATGG....... 311.000.00-----1.00------------------------
..........................................................................................................................................................................................................................TTCGAGCGATTCTCCTGCCTCAGAACC..... 271.000.00-----1.00------------------------
.........................................................................................AACCAACCCCCTTTCGGT............................................................................................................................................... 181.000.00-----------1.00------------------