ID: uc010uxw.1_intron_8_0_chr16_4920343_f
GENE: (9)
chr16:4920293-4920566+


(17)
B-CELL 		(19)
BREAST 		(45)
CELL-LINE 		(3)
FIBROBLAST 		(4)
HEART 		(7)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(41)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
GCAAGGATGCCCTGCTCAAGCGTGCTCGGAAACTTCACCTCTATGAACAGGTGGGTGACTCTAGAGTGAAGCCCTTTGGCTTTGGGGTCCTGGCGGAGGGGTGACTGAGTCTTAAGCAATGATGCGTCTGCTGCCCCACTGCCTCCTTGTGATCACCCCATCATGCGTCCTGAGCGTAAGAGCGATGTGTAAACCTGCCTTGAATTGTGTCCCGCTCTTCGCAGGGGGGCCGTCTGAAGGAGCCTCTCCAGAAGCTCAAGGAAGCCATTGGCAG
........................................................(((((...(((...(((((((.(((..((...)).))).))))))).))))))))....(((....))).....................................................................................................................................................
..................................................51.............................................................................130..............................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR038859(GSM458542)
MM386. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038853(GSM458536)
MELB. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343336SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.....................................................................................................TGACTGAGTCTTAAGCAATGATGCG....................................................................................................................................................2512378.002378.001083.00717.00129.0065.0053.0017.0017.00-24.007.007.0016.008.005.0010.003.0011.0010.006.005.0013.0011.005.003.004.009.008.0016.009.002.005.007.002.001.004.002.00--1.003.002.001.003.003.00-3.001.003.00-7.003.005.001.002.003.001.002.00---3.001.005.002.001.001.001.00-1.001.00----1.00------1.003.00---------------1.001.001.00--1.00---1.00-1.00-1.00-1.00-1.00--1.00----1.001.00---1.001.00-1.00----1.00--1.00--1.00-1.00--
....................................................................................................GTGACTGAGTCTTAAGCAATGATGCG....................................................................................................................................................2611991.001991.00569.00358.00197.0098.00116.0063.0041.00-27.0032.0027.0018.0023.0021.0013.0024.006.006.0016.0015.004.007.0011.0016.0013.008.0010.002.006.0015.0010.004.0010.007.008.009.00-9.009.004.005.007.006.005.008.004.006.002.004.00-4.001.006.005.003.004.004.006.005.00-2.004.00-3.003.002.002.003.002.002.00-3.001.003.002.001.003.003.002.001.003.002.00--2.002.00--1.002.00-1.002.001.002.001.00-----1.001.00-1.00-1.00----------1.00-1.00-1.001.00---1.001.00----1.00-----1.00--1.00-----
...................................................................................................GGTGACTGAGTCTTAAGCAATGATGCG....................................................................................................................................................271153.00153.0040.0033.0022.0012.005.005.00---7.004.00-2.006.001.00-1.003.001.00-1.00-1.00-1.00---2.00-----------1.00--1.00--1.00-1.00------1.00-----------------------------------------------------------------------------1.00-------------
..................................................................................................GGGTGACTGAGTCTTAAGCAATGATGCG....................................................................................................................................................281138.00138.0054.0037.006.007.002.0010.00---7.002.00------1.00----2.001.003.00------1.00-2.00--------------1.00---------1.00---------1.00------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATGC.....................................................................................................................................................24177.0077.0032.0023.002.0011.00-2.00----1.00-----1.001.00----------1.00-------------------------------------1.00--------------------2.00-----------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGC.....................................................................................................................................................25162.0062.0018.009.0011.004.001.001.00-----1.001.00---2.00---1.00-1.00---1.00-----1.001.00-----1.00-----1.00-------------4.00------------1.00--1.00---1.00-------------------------------------------------------------------
......................................................................................................GACTGAGTCTTAAGCAATGATGCG....................................................................................................................................................24146.0046.0015.003.0023.002.00----------------1.00-1.00--------------------------------------------------------------------------------------------------------------------------1.00-
.....................................................................................................TGACTGAGTCTTAAGCAATGAT.......................................................................................................................................................22138.0038.001.00------29.00----------------------------8.00--------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGAT.......................................................................................................................................................23125.0025.00-------22.00----------------------------3.00--------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATGCGT...................................................................................................................................................26122.0022.00-3.001.001.00-1.00--1.00-----2.00-2.00----1.00--------------------1.00-1.00--2.00---------------------------1.00---------------1.00-1.00--2.00-------------------------------------------------1.00
.................................................................................................GGGGTGACTGAGTCTTAAGCAATGATGCG....................................................................................................................................................29120.0020.007.006.00-3.001.001.00---1.00------------------------------1.00----------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGCGT...................................................................................................................................................27118.0018.004.001.001.00-1.001.00--3.001.00----2.00----1.001.00----------1.00----------------------------------------------1.00--------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATG......................................................................................................................................................23112.0012.004.00-1.005.00-------1.00-----------------------------------1.00---------------------------------------------------------------------------------------------------
.......................................................................................................ACTGAGTCTTAAGCAATGATGCG....................................................................................................................................................2319.009.001.00-8.00------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................GGTGACTGAGTCTTAAGCAATGATGC.....................................................................................................................................................2617.007.003.00-4.00------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGA........................................................................................................................................................2117.007.00-------7.00-------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................GGGTGACTGAGTCTTAAGCAATGATGC.....................................................................................................................................................2716.006.005.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................GAGGGGTGACTGAGTCTTAAGCAATGATGCG....................................................................................................................................................3115.005.002.002.00-----------------------1.00-------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGTGACTCTAGAGTG..............................................................................................................................................................................................................1814.004.00---4.00-----------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATTCG....................................................................................................................................................2614.0025.00----2.00-------1.00--1.00-----------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGCA....................................................................................................................................................2614.0062.001.00--1.00--------------1.001.00-------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATG......................................................................................................................................................2414.004.00--2.001.00------------------------------------1.00----------------------------------------------------------------------------------------------------------
................................................................................................AGGGGTGACTGAGTCTTAAGCAATGATGCG....................................................................................................................................................3014.004.001.003.00-------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................GACTGAGTCTTAAGCAATGATGC.....................................................................................................................................................2314.004.002.00-------------------1.00-------------------------------------------------------------------------------------------1.00----------------------------------
.....................................................................................................TGACTGAGTCTTAAGC.............................................................................................................................................................1614.004.003.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGCGTC..................................................................................................................................................2814.004.00--3.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................CTGAGTCTTAAGCAATGATGCG....................................................................................................................................................2214.004.003.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATG.........................................................................................................................................................2113.003.002.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGCGA...................................................................................................................................................2713.001991.00--3.00------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATTCG....................................................................................................................................................2513.0038.001.00-----1.00----------------------------------1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCA............................................................................................................................................................1713.003.002.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGA........................................................................................................................................................2212.002.00------------------------------------------------1.00----------1.00---------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATCCG....................................................................................................................................................2512.0038.002.00--------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGCT....................................................................................................................................................2612.0062.00-1.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................GGTGACTGAGTCTTAAGCAATGATGCGT...................................................................................................................................................2812.002.00--1.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGACGCG....................................................................................................................................................2612.002.00----1.00------1.00---------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................GGGTGACTGAGTCTTAAGCAATGATGCGT...................................................................................................................................................2912.002.00-----------------1.00-------------------------------------------------1.00-------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATG.........................................................................................................................................................2012.002.002.00--------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGAGGCG....................................................................................................................................................2612.002.00-----------1.00--1.00------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGAG....................................................................................................................................................2612.004.00-----1.00-----1.00---------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGCC....................................................................................................................................................2612.0062.00-1.00-----------------------------------------------------------------------------1.00-------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATGCT....................................................................................................................................................2512.0077.00----1.00------------------------------------------------------------------------------------------1.00---------------------------------------------------
...................................................................................................GGTGACTGAGTCTTAAGCAATG.........................................................................................................................................................2211.001.00-1.00-------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATCCG....................................................................................................................................................2611.0025.00----------------1.00----------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATGTG....................................................................................................................................................2511.0012.00-----------------------------------------1.00---------------------------------------------------------------------------------------------------------
..........................CGGAAACTTCACCTCTATGAACAGGG..............................................................................................................................................................................................................................261.000.00-------------------------------------------------------------------------------------------------1.00-------------------------------------------------
..................................................GTGGGTGACTCTAGAGTGAAGC..........................................................................................................................................................................................................2211.001.00---1.00-----------------------------------------------------------------------------------------------------------------------------------------------
.....................................................GGTGACTCTAGAGTGAAC...........................................................................................................................................................................................................181.000.00-------------------------------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................AGCGATGTGTAAACCTGC............................................................................1811.001.00-----------------------------------------------------------------------------------1.00---------------------------------------------------------------
....GGATGCCCTGCTCAAGCGTGCT........................................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------------------------------------------------------------------1.00---------
...................................................................................................GGTGACTGAGTCTTAAGCAATGATGCT....................................................................................................................................................2711.007.00------------------------------------------------1.00--------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................CTGAAGGAGCCTCTCCAGA......................1911.001.00----------------------------------------------------------------------------------------------------------------------------------1.00----------------
.........................................................................................CTGGCGGAGGGGTGAGA........................................................................................................................................................................171.000.00------------------------------------------------------------------------------------------------------------------------1.00--------------------------
......................................................GTGACTCTAGAGTGAAGCCC........................................................................................................................................................................................................2011.001.00----------------------------------------------------------------------------------------1.00----------------------------------------------------------
.....................GTGCTCGGAAACTTCACCTCTAT......................................................................................................................................................................................................................................2311.001.00--------------------------------------------------------------------------------------------------------------------------------------1.00------------
.............................................................................................................................................................................................................................CAGGGGGGCCGTCTGAAGGAGCCTCTCCATA......................311.000.00----1.00----------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................GGTGACTGAGTCTTAAGCAATGAGGCG....................................................................................................................................................271.000.00-1.00-------------------------------------------------------------------------------------------------------------------------------------------------
..........CCTGCTCAAGCGTGCTCGGAAACTCC..............................................................................................................................................................................................................................................261.000.00------------------------------------------------------------------------------------------1.00--------------------------------------------------------
............................................................CTAGAGTGAAGCCCTTGAGG..................................................................................................................................................................................................201.000.00----------------------------------------------------------------------1.00----------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGC.............................................................................................................................................................1711.001.00-1.00-------------------------------------------------------------------------------------------------------------------------------------------------
.........................TCGGAAACTTCACCTCTATGAACA.................................................................................................................................................................................................................................2411.001.00---------------------------------------------------------------------------------------------------------1.00-----------------------------------------
................................................................................................................................................................................TAAGAGCGATGTGTAAACCTGCCTTGAATTGTGT................................................................3411.001.00------------------------------------------------------------------------------------------------------------1.00--------------------------------------
............................................................................................................................................................................................................................................AAGGAGCCTCTCCAGAAGCCC.................211.000.00------------------------------------------------------------------------------------------1.00--------------------------------------------------------
.........................................................................................................................................................................................TGTGTAAACCTGCCTTGAATTGTGTCCC.............................................................2811.001.00-------------------------1.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATGCGA...................................................................................................................................................2611.002378.00--1.00------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................GTCTGAAGGAGCCTCTCCAG.......................2011.001.00---------------------------------------------------1.00-----------------------------------------------------------------------------------------------
..................................................................................TGGGGTCCTGGCGGAGGGGTGACCGAG.....................................................................................................................................................................271.000.00-----------------------------------------------------------------------------------------------------------------------------1.00---------------------
......................................................GTGACTCTAGAGTGAAGC..........................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------1.00--------------------------------------------------------------------------
......................................................................................................GACTGAGTCTTAAGCAATGATG......................................................................................................................................................2211.001.00---1.00-----------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................CTTGAATTGTGTCCCGCTCTTCGC....................................................2411.001.00---------------------------------------1.00-----------------------------------------------------------------------------------------------------------
.........................TCGGAAACTTCACCTCTATGAACAGGG..............................................................................................................................................................................................................................271.000.00-----------------------------------------------------------------------------------1.00---------------------------------------------------------------
.........CCCTGCTCAAGCGTGCTCG......................................................................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------------------------------------------------------------1.00-----------
.................................................................................................GGGGTGACTGAGTCTTAAGCAATGATGCT....................................................................................................................................................291.000.00----------1.00----------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGAT....................................................................................................................................................2611.004.00---------------------------------1.00-----------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGAAGCG....................................................................................................................................................2511.007.00---------------------1.00-----------------------------------------------------------------------------------------------------------------------------
..................................................................................................GGGTGACTGAGTCTTAAGCAATGAG.......................................................................................................................................................251.000.00-----------------------1.00---------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATGCGTC..................................................................................................................................................2711.001.00-1.00-------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................GGGTGACTGAGTCTTAAGCAATGATGCGTC..................................................................................................................................................3011.001.00-1.00-------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATGCA....................................................................................................................................................2511.0077.001.00--------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGATGAG....................................................................................................................................................2511.0012.00-----------------1.00---------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCAATGATGCGTCTGCTGCCCCACTGA....................................................................................................................................281.000.00---------------------------------------1.00-----------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATACG....................................................................................................................................................2611.0025.00---------------------1.00-----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TGACTGAGTCTTAAGCAATGACGCG....................................................................................................................................................2511.007.00----1.00----------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAATGATGGG....................................................................................................................................................2611.004.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCAAT..........................................................................................................................................................2011.001.00-------1.00-------------------------------------------------------------------------------------------------------------------------------------------
............................................................CTAGAGTGAAGCCCTCG.....................................................................................................................................................................................................171.000.00----------------------------------------------------------------------1.00----------------------------------------------------------------------------
.....................................................GGTGACTCTAGAGTGACGG..........................................................................................................................................................................................................191.000.00-----------------------------------------------------------------1.00---------------------------------------------------------------------------------
....................................................................................................GTGACTGAGTCTTAAGCCAT..........................................................................................................................................................2011.001.00-----------------1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................CAAGGAAGCCATTGGC..1620.500.50-----------------------------------------------------------------------------------0.50---------------------------------------------------------------
......................................................................................GTCCTGGCGGAGGGG.............................................................................................................................................................................1540.250.25------------------------------------------------------------------------------------0.25--------------------------------------------------------------
..................................................................................................GGGTGACTGAGTCTT.................................................................................................................................................................1570.140.140.14--------------------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
GCAAGGATGCCCTGCTCAAGCGTGCTCGGAAACTTCACCTCTATGAACAGGTGGGTGACTCTAGAGTGAAGCCCTTTGGCTTTGGGGTCCTGGCGGAGGGGTGACTGAGTCTTAAGCAATGATGCGTCTGCTGCCCCACTGCCTCCTTGTGATCACCCCATCATGCGTCCTGAGCGTAAGAGCGATGTGTAAACCTGCCTTGAATTGTGTCCCGCTCTTCGCAGGGGGGCCGTCTGAAGGAGCCTCTCCAGAAGCTCAAGGAAGCCATTGGCAG
........................................................(((((...(((...(((((((.(((..((...)).))).))))))).))))))))....(((....))).....................................................................................................................................................
..................................................51.............................................................................130..............................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR038859(GSM458542)
MM386. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038853(GSM458536)
MELB. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343336SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..................................................................................TGGGGTCCTGGCGGATAG.............................................................................................................................................................................. 182.000.00--------------------------------------------------------------------------------------2.00------------------------------------------------------------
......................................................................GCCCTTTGGCTTTGGAGC.......................................................................................................................................................................................... 182.000.00--------------------------------------------------------------------------------------------------------------------------------------------1.00--1.00---
.................................................................................................GGGGTGACTGAGTCTTACC.............................................................................................................................................................. 191.000.00--------------------------------------------------------------------------------------------------------------------1.00------------------------------
................................................................................................................................................................................................................................GGGGGCCGTCTGAAGGTCCC.............................. 201.000.00------------------------------------------------------------------------------------------------------------------1.00--------------------------------
.......................................................................................................................................................................................................................................................CCAGAAGCTCAAGGAGAG......... 181.000.00--------------------------------------------------------------------------------------------------------------1.00------------------------------------
.................................................................................................GGGGTGACTGAGTCTTACCG............................................................................................................................................................. 201.000.00----------------------------------------------------------------------1.00----------------------------------------------------------------------------