ID: uc010uvd.1_intron_1_0_chr16_1470614_r.3p
GENE: (3)
chr16:1470564-1470813-


(2)
AGO2.ip 		(1)
AGO3.ip 		(8)
B-CELL 		(3)
BRAIN 		(10)
BREAST 		(34)
CELL-LINE 		(6)
CERVIX 		(3)
HEART 		(4)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CCTGGTATGGCGCCCGGTTTCCGGTTTCCGGCGACGGAAGTGACGCTATCACGGCGCGCCAAGGCGTCAGTCGAGGAGTCAAGGCAGCAATGAATCGTGTCTTGTGTGCCCCGGCGGCCGGGTGAGCTCCTCAAGGTCTCGGAGGGCCGAGGGCAGACACCGGCGGGCGGGCGGAGCGCTTACTGCTCTCTCTCTTCCAGGGCCGTCCGGGCGCTGAGGCTCATAGGCTGGGCTTCCCGAAGCCTTCATC
......................................................................................(((.(((...(((..((((.(((((.....(((((((..((.((((..(((((....)))))))))))..)).)))))))))).))))..)))))).)))................................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189783SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		GSM532872(GSM532872)
G652T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................................TTACTGCTCTCTCTCTTCCAG..................................................21120.0020.0018.00---------1.00--------------1.00-------------------------------------------------------------------------
...........................................................................................GAATCGTGTCTTGTGTG..............................................................................................................................................17113.0013.00---13.00-----------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTACTGCTCTCTCTCTTCCAGT.................................................22113.0020.004.00---------1.00------1.00--------------------------1.001.00----------1.00--------------------1.00----1.001.00------1.00--------
.........................................................................................................................................CTCGGAGGGCCGAGGGC................................................................................................17112.0012.00-9.003.00------------------------------------------------------------------------------------------------
..............................................................................................TCGTGTCTTGTGTGCAG...........................................................................................................................................177.000.005.00---------1.00----------------------------------------------1.00-----------------------------------------
.................................................................................................................................CTCAAGGTCTCGGAGGGC.......................................................................................................1817.007.00--2.00--3.00-----1.00--------1.00------------------------------------------------------------------------------
......................................................................................................................CGGGTGAGCTCCTCAAGGTATC..............................................................................................................227.000.00------7.00--------------------------------------------------------------------------------------------
.............................................................................................ATCGTGTCTTGTGTGCCCCGGCG......................................................................................................................................2314.004.00-------2.00-------------2.00-----------------------------------------------------------------------------
..................................................................................................................................TCAAGGTCTCGGAGGGCC......................................................................................................1814.004.00-4.00-------------------------------------------------------------------------------------------------
.....................................................................................AGCAATGAATCGTGTCTTGTG................................................................................................................................................2114.004.00----1.00----------3.00-----------------------------------------------------------------------------------
......................................................................................GCAATGAATCGTGTCTTGTG................................................................................................................................................2013.003.00----3.00----------------------------------------------------------------------------------------------
...................................................................................................................................CAAGGTCTCGGAGGGCCGAGGG.................................................................................................2213.003.00----3.00----------------------------------------------------------------------------------------------
.................................................................GTCAGTCGAGGAGTCAAGGCAA...................................................................................................................................................................223.000.00----------------3.00----------------------------------------------------------------------------------
.........................................................................................ATGAATCGTGTCTTGTGTGCCCCGGC.......................................................................................................................................2613.003.00-3.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................AGGTCTCGGAGGGCCGAGGG.................................................................................................2013.003.00-------1.00-1.00---------------------1.00-------------------------------------------------------------------
...................................................................CAGTCGAGGAGTCAAGGC.....................................................................................................................................................................1813.003.00-3.00-------------------------------------------------------------------------------------------------
...................................................................CAGTCGAGGAGTCAAGGCAG...................................................................................................................................................................2013.003.00-3.00-------------------------------------------------------------------------------------------------
.............................................................................................ATCGTGTCTTGTGTGCCCCGG........................................................................................................................................2113.003.00----2.00--------------------------------------------------------------1.00-------------------------------
................................................................................................................................CCTCAAGGTCTCGGAGGGC.......................................................................................................1912.002.00-1.001.00------------------------------------------------------------------------------------------------
....................................................................................................................GCCGGGTGAGCTCCTCAAG...................................................................................................................1912.002.00---------1.00---1.00-------------------------------------------------------------------------------------
.........................................................................................................................................CTCGGAGGGCCGAGGGCA...............................................................................................1812.002.00-----2.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTACTGCTCTCTCTCTTCCAGA.................................................2212.0020.00------------------------------------------------------------------------------------1.00-1.00------------
..................................................................................................................................................................................CTTACTGCTCTCTCTCTTCCAGT.................................................2312.001.001.00-----------------------1.00--------------------------------------------------------------------------
........................................................................................AATGAATCGTGTCTTGTG................................................................................................................................................1812.002.00-1.001.00------------------------------------------------------------------------------------------------
.......................................................................................................................................GTCTCGGAGGGCCGAGGG.................................................................................................1812.002.00--1.00--------------------------------------------------------------------------------------------1.00---
.................................................................................................................................CTCAAGGTCTCGGAGGGCCGAGG..................................................................................................2312.002.00----------------------------------------------------------1.00--------------------------1.00-------------
..................................................................TCAGTCGAGGAGTCAAGGCAGCAATGAATCG.........................................................................................................................................................3112.002.00--2.00------------------------------------------------------------------------------------------------
..................................................................................................................CGGCCGGGTGAGCTCCTCAAG...................................................................................................................2112.002.00-------------1.00--------------1.00----------------------------------------------------------------------
.................................................................GTCAGTCGAGGAGTCAAGGC.....................................................................................................................................................................2012.002.00-----------------2.00---------------------------------------------------------------------------------
..............................................................................................TCGTGTCTTGTGTGCAGCC.........................................................................................................................................192.000.00---------------------------1.00---------------1.00-------------------------------------------------------
.............................................................................................................................GCTCCTCAAGGTCTCGGA...........................................................................................................1812.002.00----------------------------------------------------------------------------1.00---1.00------------------
.............................................................................GTCAAGGCAGCAATGAATCGT........................................................................................................................................................2112.002.00-------2.00-------------------------------------------------------------------------------------------
....................................................................AGTCGAGGAGTCAAGGCAGCAACG..............................................................................................................................................................2412.001.00------------------------------2.00--------------------------------------------------------------------
.................................................................................AGGCAGCAATGAATCGTG.......................................................................................................................................................1812.002.00-----1.00-----1.00---------------------------------------------------------------------------------------
.................................................................................................................................................GCCGAGGGCAGACACCGGCGGGCGGGGGG............................................................................291.000.00------------1.00--------------------------------------------------------------------------------------
...........................................................................................................................................CGGAGGGCCGAGGGCAGACACCGGCGGGC..................................................................................2911.001.00------------1.00--------------------------------------------------------------------------------------
........................................................................................AATGAATCGTGTCTTGTGTGCCCCCG........................................................................................................................................2611.001.00----------------------------------------------------1.00----------------------------------------------
...............................................................................................................................TCCTCAAGGTCTCGGAG..........................................................................................................1711.001.00---------1.00-----------------------------------------------------------------------------------------
..................................................................................................GTCTTGTGTGCCCCGGCG......................................................................................................................................1811.001.00-----------------------------------1.00---------------------------------------------------------------
................................................................................................................................................................CGGCGGGCGGGCGGAGGGG.......................................................................191.000.00-----------------------------------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................GCGCTGAGGCTCATAGGCTGGGA.................231.000.00--------------------1.00------------------------------------------------------------------------------
...........................................................................................GAATCGTGTCTTGTGTGCCCCGGCG......................................................................................................................................2511.001.00-------------------------------------------------------------1.00-------------------------------------
.............................................................................................ATCGTGTCTTGTGTGCCC...........................................................................................................................................1811.001.00-1.00-------------------------------------------------------------------------------------------------
..............................................................................................TCGTGTCTTGTGTGCAGC..........................................................................................................................................181.000.00-----------------------1.00---------------------------------------------------------------------------
....................................................................................................CTTGTGTGCCCCGGCGGCCGGGTGAG............................................................................................................................2611.001.00-------------1.00-------------------------------------------------------------------------------------
....................................................................................................................GCCGGGTGAGCTCCTCAAGGTC................................................................................................................2211.001.00------------------------------------------------------1.00--------------------------------------------
.........................................................................................ATGAATCGTGTCTTGTGTGC.............................................................................................................................................2011.001.00---------1.00-----------------------------------------------------------------------------------------
..............................................................................TCAAGGCAGCAATGAATC..........................................................................................................................................................1811.001.00---------------------------1.00-----------------------------------------------------------------------
.........................................................................................................GTGCCCCGGCGGCCGGGTGA.............................................................................................................................2011.001.00-----------------------------------------------------1.00---------------------------------------------
...................................................................................................................................................................................TTACTGCTCTCTCTCTTCC....................................................1911.001.00------------------1.00--------------------------------------------------------------------------------
........................................................................GAGGAGTCAAGGCAGCAATGAATCG.........................................................................................................................................................2511.001.00-----------------------------------------------1.00---------------------------------------------------
.............................................................................................ATCGTGTCTTGTGTGCCCCG.........................................................................................................................................2011.001.00-1.00-------------------------------------------------------------------------------------------------
...............................................................................................................................................................CCGGCGGGCGGGCGGTCCC........................................................................191.000.00------------------------------------------------------------------1.00--------------------------------
.........................................................................................................................GTGAGCTCCTCAAGGTCTCGGAGGGC.......................................................................................................2611.001.00----------------------1.00----------------------------------------------------------------------------
........................................................................GAGGAGTCAAGGCAGCAATGAATC..........................................................................................................................................................2411.001.00-----1.00---------------------------------------------------------------------------------------------
....................................................................................................................................AAGGTCTCGGAGGGCCGAGGGC................................................................................................2211.001.00--1.00------------------------------------------------------------------------------------------------
.........................................................................................ATGAATCGTGTCTTGTGTG..............................................................................................................................................1911.001.00-------1.00-------------------------------------------------------------------------------------------
.........................................................................................................GTGCCCCGGCGGCCGGGTGAGCTCCT.......................................................................................................................2611.001.00--------------1.00------------------------------------------------------------------------------------
...................................................................................................................................................................CGGGCGGGCGGAGCGGGCA....................................................................191.000.00------------------------1.00--------------------------------------------------------------------------
..............................................................................................................................................AGGGCCGAGGGCAGACAC..........................................................................................1811.001.00-----------1.00---------------------------------------------------------------------------------------
...........................................................................................GAATCGTGTCTTGTGT...............................................................................................................................................1611.001.00----------------------------------------------------------------------------------------1.00----------
.............................................................................................................................GCTCCTCAAGGTCTCGGAGG.........................................................................................................2011.001.00-------------------------------------------------1.00-------------------------------------------------
...................................................................................................................................................................................TTACTGCTCTCTCTCTTCCA...................................................2011.001.00----------1.00----------------------------------------------------------------------------------------
.............................................................................................................CCCGGCGGCCGGGTGAGCTCCTCAAGGT.................................................................................................................2811.001.00--1.00------------------------------------------------------------------------------------------------
...........................................................................................................................GAGCTCCTCAAGGTCTCGGAG..........................................................................................................2111.001.00-----------------------------------------------------------------------------------------1.00---------
........................................................................................AATGAATCGTGTCTTGTGTGCCCC..........................................................................................................................................2411.001.00----------------------1.00----------------------------------------------------------------------------
.............................................................................................ATCGTGTCTTGTGTGCCCCGGCGGCC...................................................................................................................................2611.001.00-----1.00---------------------------------------------------------------------------------------------
....................................................................AGTCGAGGAGTCAAGGCAGCAA................................................................................................................................................................2211.001.00---------------------------------------------------------------------------------------------1.00-----
..........................................................................................................................................TCGGAGGGCCGAGGGCAGACACCGGC......................................................................................2611.001.00--------------------------------------------------------------------1.00------------------------------
..................................................................................................................................................................................CTTACTGCTCTCTCTCTTCCAG..................................................2211.001.00-------------------------------------------------------------------------1.00-------------------------
...................................................................................................................................................................................TTACTGCTCTCTCTCTTCCATT.................................................2211.001.00-----------------------------------------------------------------1.00---------------------------------
....................................................................AGTCGAGGAGTCAAGGCAGCAATG..............................................................................................................................................................2411.001.00--1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................GTCTCGGAGGGCCGAGGGCAGACACCGGC......................................................................................2911.001.00-1.00-------------------------------------------------------------------------------------------------
...............................................................................................................CGGCGGCCGGGTGAGCTCCTCA.....................................................................................................................2211.001.00---------------------------------------------------------------------------------1.00-----------------
.............................................................................GTCAAGGCAGCAATGAATA..........................................................................................................................................................191.000.00------------------------------------------------------------1.00--------------------------------------
...........................................................................................GAATCGTGTCTTGTGTGCC............................................................................................................................................1911.001.00-----------------------------------------1.00---------------------------------------------------------
.................................................................GTCAGTCGAGGAGTCAAGGCAGCAATG..............................................................................................................................................................2711.001.001.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................CCGAGGGCAGACACCGGC......................................................................................1811.001.00-----------------------------------------------------------------------1.00---------------------------
...................................................................................................................................................................CGGGCGGGCGGAGCGGGAA....................................................................191.000.00-------------------------------------------------------------------------------1.00-------------------
..............................................................................................................................................AGGGCCGAGGGCAGACACCG........................................................................................2011.001.00----------------------------------------1.00----------------------------------------------------------
...............................................................................CAAGGCAGCAATGAATCGTG.......................................................................................................................................................2011.001.00-----1.00---------------------------------------------------------------------------------------------
.........................................................................................................................................CTCGGAGGGCCGAGGGCAGACACCGG.......................................................................................2611.001.00--------------------------------------------------------------------------------------------1.00------
..............................................................................................................................CTCCTCAAGGTCTCGGAG..........................................................................................................1811.001.00------------------------------------1.00--------------------------------------------------------------
...............................................................................................CGTGTCTTGTGTGCCCCG.........................................................................................................................................1811.001.00-1.00-------------------------------------------------------------------------------------------------
...............................................................................CAAGGCAGCAATGAATCG.........................................................................................................................................................1811.001.00-----1.00---------------------------------------------------------------------------------------------
........................................................................GAGGAGTCAAGGCAGCAATGAA............................................................................................................................................................2211.001.00------------------1.00--------------------------------------------------------------------------------
........................................................................................................................GGTGAGCTCCTCAAGGTCTC..............................................................................................................2011.001.00---------------------------------------------------------------------1.00-----------------------------
................................................................................................................................................................CGGCGGGCGGGCGGAGCGGAGC....................................................................221.000.00--------------------------------------------------------------------------1.00------------------------
...................................................................................................................................................................................TTACTGCTCTCTCTCTTCCAGTT................................................2311.0020.00----1.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................GCCGTCCGGGCGCTGAG................................1711.001.00-------------------------------1.00-------------------------------------------------------------------
...................................................................................................................................................................................TTACTGCTCTCTCTCTTCCAGG.................................................2211.001.001.00--------------------------------------------------------------------------------------------------
.......................................................................CGAGGAGTCAAGGCAGCAATG..............................................................................................................................................................2111.001.00--------------1.00------------------------------------------------------------------------------------
.............................................................................................................................................GAGGGCCGAGGGCAGACA...........................................................................................1811.001.00-----------------------------1.00---------------------------------------------------------------------
...........................................................................GAGTCAAGGCAGCAATGAA............................................................................................................................................................1911.001.00--------------------------------1.00------------------------------------------------------------------
............................................................................................................................................................................GGAGCGCTTACTGCTCTCTCTCTTCCAGGGCCGT............................................3411.001.00--------------------------------1.00------------------------------------------------------------------
..............................................................................................................................CTCCTCAAGGTCTCGGAGGGC.......................................................................................................2111.001.00--1.00------------------------------------------------------------------------------------------------
.................................................................................................................................CTCAAGGTCTCGGAGGGCCGAGGGCAG..............................................................................................2711.001.00---------------------------------------------------1.00-----------------------------------------------
.......................................................................................................GTGTGCCCCGGCGGCCGG.................................................................................................................................1811.001.00-----------------------1.00---------------------------------------------------------------------------
..........................................................................................................................................TCGGAGGGCCGAGGGCAA..............................................................................................181.000.00---------------------------------------------------------------1.00-----------------------------------
............................................................................................................CCCCGGCGGCCGGGTGAGCTCCTCAAG...................................................................................................................2711.001.00-------------------------------------------------------------------------------------------1.00-------
...........................................................................................................GCCCCGGCGGCCGGGTGAGCTCC........................................................................................................................2311.001.00--------------------------------------1.00------------------------------------------------------------
...............................................................................................................................................................CCGGCGGGCGGGCGGTCC.........................................................................181.000.00----------------------------------------------------------------1.00----------------------------------
.......................................................................................................................................................................CGGGCGGAGCGCTTACTG.................................................................1811.001.00----------------------------------------------------------------------1.00----------------------------
...................................................................................................................................................................CGGGCGGGCGGAGCGGGGT....................................................................191.000.00------------------------------------------------1.00--------------------------------------------------
.............................................................................................ATCGTGTCTTGTGTGC.............................................................................................................................................1611.001.00--------------------------------------------------1.00------------------------------------------------
.............................................................................................................................GCTCCTCAAGGTCTCGGAGGGC.......................................................................................................2211.001.00-1.00-------------------------------------------------------------------------------------------------
................GTTTCCGGTTTCCGGCACCA......................................................................................................................................................................................................................201.000.00--------------1.00------------------------------------------------------------------------------------
.............................................................................................................................................................CACCGGCGGGCGGGCGGCGTC........................................................................211.000.00---------------------------------------------------------------------------1.00-----------------------
..........................................................................GGAGTCAAGGCAGCAATGAATCGT........................................................................................................................................................2411.001.00--------------------------1.00------------------------------------------------------------------------
..........................................................................................TGAATCGTGTCTTGTGTGC.............................................................................................................................................1911.001.00---------------------------------------1.00-----------------------------------------------------------
.................................................................................................................................CTCAAGGTCTCGGAGGG........................................................................................................1711.001.00-------1.00-------------------------------------------------------------------------------------------
...........................................................................................................GCCCCGGCGGCCGGGGCAC............................................................................................................................191.000.00------------1.00--------------------------------------------------------------------------------------
...............................................................GCGTCAGTCGAGGAGTCAAGGC.....................................................................................................................................................................2211.001.00-1.00-------------------------------------------------------------------------------------------------
...................................................................................................................................CAAGGTCTCGGAGGGCCG.....................................................................................................1811.001.00--1.00------------------------------------------------------------------------------------------------
.................................................................................................TGTCTTGTGTGCCCCGGC.......................................................................................................................................1811.001.00--1.00------------------------------------------------------------------------------------------------
......................................................................TCGAGGAGTCAAGGCATCA.................................................................................................................................................................191.000.00------------------------------------------1.00--------------------------------------------------------
.............................................................................................................CCCGGCGGCCGGGTGAGCTCCTC......................................................................................................................2311.001.00---------------------------------------------------------------------------------------1.00-----------
..............................................................................................................................................................ACCGGCGGGCGGGCGGAG..........................................................................1811.001.00--------------------------------------------------------------1.00------------------------------------
....................................................................................................................GCCGGGTGAGCTCCTCAAGGT.................................................................................................................2111.001.00-------------------------------------------------------1.00-------------------------------------------
............................................................................AGTCAAGGCAGCAATGAATCG.........................................................................................................................................................2111.001.00-1.00-------------------------------------------------------------------------------------------------
....................................................................................CAGCAATGAATCGTGTCTTGT.................................................................................................................................................2111.001.00-----------------------------------------------------------1.00---------------------------------------
............................................................................................AATCGTGTCTTGTGTGCCCCGGC.......................................................................................................................................2311.001.00----1.00----------------------------------------------------------------------------------------------
.....................................................................................AGCAATGAATCGTGTCTTGT.................................................................................................................................................2011.001.00--------------------------1.00------------------------------------------------------------------------
..........................................................................GGAGTCAAGGCAGCAATGA.............................................................................................................................................................1911.001.00------------------------------------------------------------------------1.00--------------------------
........................................................................GAGGAGTCAAGGCAGCAATG..............................................................................................................................................................2011.001.00---------------------------------1.00-----------------------------------------------------------------
.................................................................................................................................CTCAAGGTCTCGGAGGGT.......................................................................................................1811.001.00-----1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................................ACCGGCGGGCGGGCGGAGCG........................................................................2011.001.00-----------------------------1.00---------------------------------------------------------------------
................................................................................................GTGTCTTGTGTGCCCCGGC.......................................................................................................................................1911.001.00----1.00----------------------------------------------------------------------------------------------
...............................................................................CAAGGCAGCAATGAATC..........................................................................................................................................................1720.500.50------------------0.50--------------------------------------------------------------------------------
....................................................................AGTCGAGGAGTCAAG.......................................................................................................................................................................1520.500.50-0.50-------------------------------------------------------------------------------------------------
...............................................................................................................CGGCGGCCGGGTGAG............................................................................................................................1550.200.20------------------------------------0.20--------------------------------------------------------------
...................................................................................................................................................................CGGGCGGGCGGAGCGC.......................................................................1670.140.14-------------------------------------------------------------------------------------------------0.14-
...............................................................................................................................................................CCGGCGGGCGGGCGGA...........................................................................1690.110.11--------------------------------------0.11------------------------------------------------------------
.................................................................................................................................................................GGCGGGCGGGCGGAGC.........................................................................1690.110.11--------------------------------------------------------------------------------------------------0.11

Antisense strand
CCTGGTATGGCGCCCGGTTTCCGGTTTCCGGCGACGGAAGTGACGCTATCACGGCGCGCCAAGGCGTCAGTCGAGGAGTCAAGGCAGCAATGAATCGTGTCTTGTGTGCCCCGGCGGCCGGGTGAGCTCCTCAAGGTCTCGGAGGGCCGAGGGCAGACACCGGCGGGCGGGCGGAGCGCTTACTGCTCTCTCTCTTCCAGGGCCGTCCGGGCGCTGAGGCTCATAGGCTGGGCTTCCCGAAGCCTTCATC
......................................................................................(((.(((...(((..((((.(((((.....(((((((..((.((((..(((((....)))))))))))..)).)))))))))).))))..)))))).)))................................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189783SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		GSM532872(GSM532872)
G652T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................GAGGGCCGAGGGCAGACG........................................................................................... 1811.000.005.00-------5.00----------------1.00-------------------------------------------------------------------------
..................................................................................................................................................................................................TTCCAGGGCCGTCCGTCGG..................................... 192.000.00----------------------------------2.00----------------------------------------------------------------
.................................................................................................................................................................................................CTTCCAGGGCCGTCCGGGCGG.................................... 211.000.00-----------1.00---------------------------------------------------------------------------------------
............................................................................................................................................GGAGGGCCGAGGGCAGCG............................................................................................ 181.000.00--------1.00------------------------------------------------------------------------------------------
...............................................................................................................................................................................................CTCTTCCAGGGCCGTCGC......................................... 181.000.00---------------------------------1.00-----------------------------------------------------------------
.........................................................................................................................GTGAGCTCCTCAAGGTCTAGC............................................................................................................ 211.000.00-------------------------------------1.00-------------------------------------------------------------
.............................................................................................................................................................................................CTCTCTTCCAGGGCCGG............................................ 171.000.00-------------------1.00-------------------------------------------------------------------------------
..............................................................................................................CCGGCGGCCGGGTGAGCCCC........................................................................................................................ 201.000.001.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................TTCCAGGGCCGTCCGTCG...................................... 181.000.00----------------------------1.00----------------------------------------------------------------------
.............................................................................................................................................................CACCGGCGGGCGGGCGGTG.......................................................................... 191.000.00----------------------------------------------1.00----------------------------------------------------
..........................................................................................................ACCCGGCCGCCGGGGCA............................................................................................................................... 1711.001.00------------------------------------------------------------------------------1.00--------------------
.........................................................................................................................GTGAGCTCCTCAAGGTTA............................................................................................................... 181.000.00----------------------------------------------------------------------------------------------1.00----
...............................................................................................................................................................................................CTCTTCCAGGGCCGTCGG......................................... 181.000.00-------------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................CGGCCCTGGAAGAGAG............................................. 1620.500.50-------------------0.50-------------------------------------------------------------------------------
..............GGAAACCGGAAACCG............................................................................................................................................................................................................................. 1550.200.20------------------------------------------------------------------------------------------------0.20--
..............................................................................................................................................................................................................AGCCTCAGCGCCCGG............................. 1550.200.20-------------------------------------0.20-------------------------------------------------------------