ID: uc010uqh.1_intron_1_0_chr15_91267375_f.5p
GENE: (2)
chr15:91267325-91267574+


(1)
AGO2.ip
(1)
B-CELL
(6)
BRAIN
(3)
BREAST
(16)
CELL-LINE
(1)
LIVER
(2)
OTHER
(4)
SKIN
(1)
XRN.ip

Sense strand
CCTCTAACTCCTGGGCTCAGATGATCCTTCTGCCTCAGCCTCCCGAGAAGGTGAGACTACAGGAGTGTACCACCATGCTTGGCTAACTTTTTTATTTTTTGTAGATACTGGGTCTTGCTTTGTTGCCTAGGCTGGTCTCAAACTCCTGGGCTCAAGCGATACTCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTTCATCTAGTCAATTTTTTTCTTTTTAAAGGCTGAATATTTC
................................................................................(((.......(((((.....)))))....((((.((((.(((..(((((((..(((.....)))))))))).))))))).))))..))).................................................................................
.............................................................................78...........................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
..................................................................................CTAACTTTTTTATTTTTTAAAG..................................................................................................................................................2217.000.00--11.006.00------------------------------
..................................................................................................................................................TGGGCTCAAGCGATACTCCTT...................................................................................215.000.00----------2.002.00-------------------1.00--
..................................................................................................................................................TGGGCTCAAGCGATACTCTAT...................................................................................214.000.00----4.00-----------------------------
..............................................................................................................................CTAGGCTGGTCTCAAACTCCTGG.....................................................................................................2303.003.00-------3.00--------------------------
.............................................................................................................................................................................................GATTACAAGCATGAGCATC..........................................193.000.00------3.00---------------------------
..............................................................................................................................................CTCCTGGGCTCAAGCGATAA........................................................................................202.000.00-----2.00----------------------------
.........................................................................................................................................................................................CTGGGATTACAAGCATGAGCAAAA.........................................241.000.00------------------1.00---------------
.......................................................................................................................TTGTTGCCTAGGCTGGTCTCCGG............................................................................................................231.000.00----------------------1.00-----------
.............................................................................................................................................ACTCCTGGGCTCAAGCGATAATAC.....................................................................................241.000.00--------------------------1.00-------
..................................................................................................................................................TGGGCTCAAGCGATACTCCTAA..................................................................................221.000.00------------------------------1.00---
........................................................................................................ATACTGGGTCTTGCTTTGTTG.............................................................................................................................2111.001.00--------------------------------1.00-
.....................TGATCCTTCTGCCTCAGCCTCCCGGG...........................................................................................................................................................................................................261.000.001.00---------------------------------
..........................................................................................................................................................AGCGATACTCCTGCCTTGGCCTCCCAG.....................................................................271.000.001.00---------------------------------
..................................................................................................................................................TGGGCTCAAGCGATACTATAA...................................................................................211.000.00----1.00-----------------------------
......................................................................................................................................GTCTCAAACTCCTGGGCTCAAGCGAT..........................................................................................2601.001.00--------1.00-------------------------
............................................................................................................................................AACTCCTGGGCTCAAGCGATACTCCTCC..................................................................................281.000.001.00---------------------------------
.....................................................................................ACTTTTTTATTTTTTGTAGGGAC..............................................................................................................................................231.000.001.00---------------------------------
..................................................................................................................................................TGGGCTCAAGCGATACTCCG....................................................................................201.000.00---------1.00------------------------
.........................................................................................................................................................................................................................TCAATTTTTTTCTTTTGGTC.............201.000.00------------1.00---------------------
................................................................................................................................AGGCTGGTCTCAAACTCCTGGGCGCT................................................................................................261.000.00-1.00--------------------------------
.................................................................................................................................................................CTCCTGCCTTGGCCTCCCAAAGAAAA...............................................................261.000.00-----1.00----------------------------
...................................................TGAGACTACAGGAGTGTACCACCATGCTTGGCC......................................................................................................................................................................331.000.00-1.00--------------------------------
.....................................................................................ACTTTTTTATTTTTTGTTTAT................................................................................................................................................211.000.00-1.00--------------------------------
..........................................................................................................................................CAAACTCCTGGGCTCAAGCGCA..........................................................................................221.000.00-------------1.00--------------------
............................TCTGCCTCAGCCTCCCGAGAAGGGGGG...................................................................................................................................................................................................271.000.00-1.00--------------------------------
..........................................................................................................................TTGCCTAGGCTGGTCGAAC.............................................................................................................191.000.00-1.00--------------------------------
...................................................................................................................................................................................................................ATCTAGTCAATTTTTTTCTTTTTAAAG............2711.001.00------------1.00---------------------
..................................................................................................................................................TGGGCTCAAGCGATACTCTAA...................................................................................211.000.00-----------------1.00----------------
..............................TGCCTCAGCCTCCCGAGAAGGGGAC...................................................................................................................................................................................................251.000.001.00---------------------------------
....................................................................................................GTAGATACTGGGTCTTGCTATG................................................................................................................................221.000.00----------------------------1.00-----
...........................................................................................................................................AAACTCCTGGGCTCAAGCGATACTCCTCT..................................................................................291.000.001.00---------------------------------
.......................ATCCTTCTGCCTCAGCCTCCGAGG...........................................................................................................................................................................................................241.000.00-1.00--------------------------------
............................................................................................................................................AACTCCTGGGCTCAAGCGATACTCCTGCCC................................................................................301.000.001.00---------------------------------
..........................................................ACAGGAGTGTACCACCATGCTTGGCC......................................................................................................................................................................261.000.001.00---------------------------------
..........................................................................................................................................................................................TGGGATTACAAGCATGAGCCAAAAT.......................................251.000.00--------------1.00-------------------
..........................................................................ATGCTTGGCTAACTTTTTTATTTTTTGCAG..................................................................................................................................................301.000.001.00---------------------------------
.......................................................................................TTTTTTATTTTTTGTAGATACT.............................................................................................................................................2240.250.25-------------0.25--------------------

Antisense strand
CCTCTAACTCCTGGGCTCAGATGATCCTTCTGCCTCAGCCTCCCGAGAAGGTGAGACTACAGGAGTGTACCACCATGCTTGGCTAACTTTTTTATTTTTTGTAGATACTGGGTCTTGCTTTGTTGCCTAGGCTGGTCTCAAACTCCTGGGCTCAAGCGATACTCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTTCATCTAGTCAATTTTTTTCTTTTTAAAGGCTGAATATTTC
................................................................................(((.......(((((.....)))))....((((.((((.(((..(((((((..(((.....)))))))))).))))))).))))..))).................................................................................
.............................................................................78...........................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
................................................................................................................................................................ACTCCTGCCTTGGCCTCCCACC.................................................................... 221.000.001.00---------------------------------
......................................................................................................................................................CTCAAGCGATACTCCGACA................................................................................. 191.000.00-------------------------1.00--------
....TAACTCCTGGGCTCAGAAGC.................................................................................................................................................................................................................................. 201.000.001.00---------------------------------
.................................................................................................................................................................CTCCTGCCTTGGCCTCCCAAAGTGCTCACC........................................................... 301.000.001.00---------------------------------
.........................................................................................................................GTTGCCTAGGCTGGTCTCAAACTGACA...................................................................................................... 271.000.001.00---------------------------------
............................................................................................................................AGTTTGAGACCAGCCTAGGC.......................................................................................................... 2001.001.00---------------------------1.00------
......................................................................................................................................................CTCAAGCGATACTCCGAG.................................................................................. 181.000.00-------------------1.00--------------
........................TCCTTCTGCCTCAGCCTCCCGAACCC........................................................................................................................................................................................................ 261.000.001.00---------------------------------
.................................................................................................................................................CTGGGCTCAAGCGATACTCCTCAG................................................................................. 241.000.00-1.00--------------------------------
.......................ATCCTTCTGCCTCAGCCTCCCGAAG.......................................................................................................................................................................................................... 251.000.00---------------------------------1.00
.................................................................................................................................GGCTGGTCTCAAACTCCTGGGCTCAGAA............................................................................................. 281.000.00-1.00--------------------------------
..........................................................................................................................TTGCCTAGGCTGGTCTCAAACTCCTGGGC................................................................................................... 291.000.00---------1.00------------------------
.............................................................................................................................................................GATACTCCTGCCTTGAATA.......................................................................... 191.000.00---------------------1.00------------
.................................................................................................................................................................CTCCTGCCTTGGCCTCCCAAAGTCTC............................................................... 261.000.001.00---------------------------------
.....AACTCCTGGGCTCAGATGATGAA.............................................................................................................................................................................................................................. 231.000.00------------------------1.00---------
.................................................................................................................................................................CTCCTGCCTTGGCCTCCCACCCC.................................................................. 231.000.00-1.00--------------------------------
..........................................................................................................................................CAAACTCCTGGGCTCAAGCGATACC....................................................................................... 251.000.00-1.00--------------------------------
...........................TTCTGCCTCAGCCTCCCGAA........................................................................................................................................................................................................... 201.000.00-----------------------1.00----------
.................................................................................................................................................CTGGGCTCAAGCGATATAG...................................................................................... 191.000.00----------------1.00-----------------
.............................................................................................................................................................................CCTCCCAAAGTGCTGGGATTACAAGAC.................................................. 271.000.00--------1.00-------------------------
.................................................................................................................................................................CTCCTGCCTTGGCCTCCCACACC.................................................................. 231.000.001.00---------------------------------
.......CTCCTGGGCTCAGATGATCCTGCGG.......................................................................................................................................................................................................................... 251.000.00-1.00--------------------------------
.................................................................................................................................GGCTGGTCTCAAACTCCTGGGCTCAGAGC............................................................................................ 291.000.00-1.00--------------------------------
........................TCCTTCTGCCTCAGCCTCCCGAAA.......................................................................................................................................................................................................... 241.000.00--------------------1.00-------------
........................TCCTTCTGCCTCAGCAAA................................................................................................................................................................................................................ 181.000.00---------------1.00------------------
................................................................................................................................................CCTGGGCTCAAGCGATACTCCTGGCT................................................................................ 261.000.001.00---------------------------------
................................................................................................................................................................................................TACAAGCATGAGCCACTCCCC..................................... 211.000.001.00---------------------------------
.................................................................................................................................GGCTGGTCTCAAACTCCTGGGCTCAGGAC............................................................................................ 291.000.00-1.00--------------------------------
.......................ATCCTTCTGCCTCAGCCTCCCGAAACT........................................................................................................................................................................................................ 271.000.00-----------------------------1.00----