ID: uc010upx.1_intron_3_0_chr15_90212904_r
GENE: PLIN1(5)
chr15:90212854-90213260-


(1)
BRAIN
(3)
BREAST
(11)
CELL-LINE
(2)
CERVIX
(1)
HEART
(5)
LIVER
(2)
OTHER
(30)
SKIN
(1)
TESTES

Sense strand
CATTGAGAAGGTGGTGGAGTACCTCCTCCCTCCAGACAAGGAAGAGTCAGGTACCTGCCATTCGGAGGCTCGGCCTGGGAGTGAGTTGTCACACACACTGCCTGGGAATCAGCAGGAGGTGGCTCAACCAGCCACTGCTCTGGAATAGGGAAGGCCAGTGGGATTTTCAGATGGATTCATAATCATTTACCCCCCCCACCCCCACCCCATCTGTAAAGAGGGAAAGTGAGTTGTGGAACTCACCAGTGAGTTTGTGGTGGACCTAGAACACCTACTTTCCAGTCCTAGACATGACCCAGATCTCTCCGGCCCCTCTCTGACCTGTTTTCTCTTCTTTCCCCCCAAATCCCTACCCAGCCCCTGCTCCTGGACACCAGCAAGCCCAGAAGTCTCCCAAGGCCAAGCCA
............................................................((((((((((...((..((((((.((......)).)))).))..))....)))....(((((((.....))))))).)))))))...(((..((...(((((......((((((........))))))......)))))..))..))).......................................................................................................................................................................................................
..................................................51..................................................................................................................................................................215..............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................................................................................................................CCCCCCCCACCCCCACCCCACG....................................................................................................................................................................................................2243.000.00--7.00-3.003.00-3.002.00-2.00--2.001.00-1.001.001.001.002.00--2.00-1.001.00--1.00-1.00------1.001.00------1.00-1.001.00-1.001.00-1.00----
.............................................................................................................................................................................................CCCCCCCCACCCCCACCCCACGTC..................................................................................................................................................................................................249.000.00----1.00-1.001.001.00---------1.001.00--------1.00-1.00--1.00-------------------------
.............................................................................................................................................................................................CCCCCCCCACCCCCACCCCACGT...................................................................................................................................................................................................234.000.00----1.001.00--------------------------1.00--1.00-----------------------
....................................................................................................................................CACTGCTCTGGAATAGG..................................................................................................................................................................................................................................................................1732.332.33------------2.33----------------------------------------------
...............................................................................................................................................AATAGGGAAGGCCAGCGG......................................................................................................................................................................................................................................................182.000.00---2.00-------------------------------------------------------
......................................................................................................TGGGAATCAGCAGGAGGTGGCTCATCC......................................................................................................................................................................................................................................................................................272.000.00---------------2.00-------------------------------------------
.....................................................................................................................................................................................................................................................................................................ACCCAGATCTCTCCGGCCCC..............................................................................................2012.002.00-----------2.00-----------------------------------------------
................................CAGACAAGGAAGAGTCAG.....................................................................................................................................................................................................................................................................................................................................................................1821.501.50--------------------------------------------------1.00-----0.50--
.........................................................................................................................................................................................................................GAGGGAAAGTGAGTTGTGGAACTCA.....................................................................................................................................................................2511.001.00---------------------------------------------1.00-------------
........................................................................................................................................................................................................................................................................................................................................................................CTGCTCCTGGACACCAGCAAGCC........................2311.001.00-----------1.00-----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................TCTCTTCTTTCCCCCCACACC...........................................................211.000.00---1.00-------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................TCTTCTTTCCCCCCAAAACC..........................................................201.000.00-------------------------------------------------------1.00---
...................................................................................................GCCTGGGAATCAGCAGGAGGTGGCTCATA.......................................................................................................................................................................................................................................................................................291.000.00----------------------1.00------------------------------------
.ATTGAGAAGGTGGTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------1.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................GACCTGTTTTCTCTTGTT.......................................................................181.000.00---------1.00-------------------------------------------------
.......................................................TGCCATTCGGAGGCTCGGC.............................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------1.00-----------------
......................................................................................................................................................................................................................AAAGAGGGAAAGTGAATC...............................................................................................................................................................................181.000.00----------------------1.00------------------------------------
.....................................................................................................................................................................................................................TAAAGAGGGAAAGTGAGTTGTGGAACT.......................................................................................................................................................................2711.001.00-----------------------------------------------1.00-----------
.............................................................................................................................................................................................CCCCCCCCACCCCCACCCCACGGC..................................................................................................................................................................................................241.000.00---------------------1.00-------------------------------------
...................................................................................................................................................................................................................................................................................................................................................CCCCAAATCCCTACCCAGCCCC..............................................2211.001.00----------------------------------1.00------------------------
..............................................................................................................................................................................................CCCCCCCACCCCCACCCCGGC....................................................................................................................................................................................................211.000.00------1.00----------------------------------------------------
.............................................................................................................................................................................................CCCCCCCCACCCCCACCCCACGTT..................................................................................................................................................................................................241.000.00----------------1.00------------------------------------------
........................................................................................................................................................................................................................................................................................................CAGATCTCTCCGGCCCCGGC...........................................................................................201.000.00----------1.00------------------------------------------------
......................................................................................................................................................AAGGCCAGTGGGATTTTCAGATGG.........................................................................................................................................................................................................................................2411.001.00---------1.00-------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................TCCTGGACACCAGCAAGCCCAGAAGTC................2711.001.00--------------------------------------------1.00--------------
..........................................................................................................................................................................................................................AGGGAAAGTGAGTTGGGT...........................................................................................................................................................................181.000.00--------------1.00--------------------------------------------
...TGAGAAGGTGGTGGAGTACCTCCT............................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-------------------------------------------1.00---------------
............................................................................................................................................................................................................................................................................................................................................................................................GCCCAGAAGTCTCCCCTTG........191.000.00-------------------------------------1.00---------------------
...................................................................................................................................................................................TAATCATTTACCCCCAG...................................................................................................................................................................................................................171.000.00---------------------------1.00-------------------------------
...........................................................................................................................................CTGGAATAGGGAAGGCCA..........................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00-----
...................................................................................................................................................................................................................................................................................................................................GTTTTCTCTTCTTTCTCC..................................................................181.000.00----------------------------------------1.00------------------
...................................................................................................................................CCACTGCTCTGGAATAGGGAAGGCCA..........................................................................................................................................................................................................................................................2611.001.00------------------------------------1.00----------------------
.............................................................................................................................................................................................CCCCCCCCACCCCCACC.........................................................................................................................................................................................................1701.001.00---------------------1.00-------------------------------------
..........................................................................................................................................................................................................................AGGGAAAGTGAGTTGAGC...........................................................................................................................................................................181.000.00-----------------1.00-----------------------------------------
........................................................................................................................................................................................................................................................AGTTTGTGGTGGACC................................................................................................................................................1530.330.33---------------------------------------------------------0.33-
.................................AGACAAGGAAGAGTCAG.....................................................................................................................................................................................................................................................................................................................................................................1730.330.33------------------------0.33----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................TGGACACCAGCAAGC.........................1590.110.11----------------------------------------------------------0.11
.................................................................................................................................................................................................................................................................................................CATGACCCAGATCTC.......................................................................................................1590.110.11-------------------------0.11---------------------------------

Antisense strand
CATTGAGAAGGTGGTGGAGTACCTCCTCCCTCCAGACAAGGAAGAGTCAGGTACCTGCCATTCGGAGGCTCGGCCTGGGAGTGAGTTGTCACACACACTGCCTGGGAATCAGCAGGAGGTGGCTCAACCAGCCACTGCTCTGGAATAGGGAAGGCCAGTGGGATTTTCAGATGGATTCATAATCATTTACCCCCCCCACCCCCACCCCATCTGTAAAGAGGGAAAGTGAGTTGTGGAACTCACCAGTGAGTTTGTGGTGGACCTAGAACACCTACTTTCCAGTCCTAGACATGACCCAGATCTCTCCGGCCCCTCTCTGACCTGTTTTCTCTTCTTTCCCCCCAAATCCCTACCCAGCCCCTGCTCCTGGACACCAGCAAGCCCAGAAGTCTCCCAAGGCCAAGCCA
............................................................((((((((((...((..((((((.((......)).)))).))..))....)))....(((((((.....))))))).)))))))...(((..((...(((((......((((((........))))))......)))))..))..))).......................................................................................................................................................................................................
..................................................51..................................................................................................................................................................215..............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
..........................................................................................................................CTCAACCAGCCACTGCGTTT......................................................................................................................................................................................................................................................................... 207.000.003.004.00---------------------------------------------------------
..........................................................................................................................CTCAACCAGCCACTGCGATT......................................................................................................................................................................................................................................................................... 206.000.004.002.00---------------------------------------------------------
..........................................................................................................................CTCAACCAGCCACTGCTCATTT....................................................................................................................................................................................................................................................................... 223.000.003.00----------------------------------------------------------
..........................................................................................................................CTCAACCAGCCACTGCTCATT........................................................................................................................................................................................................................................................................ 212.000.00-2.00---------------------------------------------------------
...........................................................................................................................................................................................TACCCCCCCCACCCCTAGC......................................................................................................................................................................................................... 192.000.00------2.00----------------------------------------------------
............................................................................................................................................................................................ACCCCCCCCACCCCCTTTT........................................................................................................................................................................................................ 191.000.00------------------------------------------1.00----------------
............................................................................................................................CAACCAGCCACTGCTCGGAT....................................................................................................................................................................................................................................................................... 201.000.001.00----------------------------------------------------------
..........................................................................................................................CTCAACCAGCCACTGCGGTT......................................................................................................................................................................................................................................................................... 201.000.00-1.00---------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................TCCCCCCAAATCCCTGGAC.................................................... 191.000.00---1.00-------------------------------------------------------
..........................................................................................................................CTCAACCAGCCACTGCGTT.......................................................................................................................................................................................................................................................................... 191.000.001.00----------------------------------------------------------
...........................................................................................................................TCAACCAGCCACTGCTCTAT........................................................................................................................................................................................................................................................................ 201.000.001.00----------------------------------------------------------
.......................................................................................................................................................................................CATTTACCCCCCCCACCCCCACCGG....................................................................................................................................................................................................... 251.000.00---1.00-------------------------------------------------------
...........................................................................................................................TCAACCAGCCACTGCTAAT......................................................................................................................................................................................................................................................................... 191.000.001.00----------------------------------------------------------
..........................................................................................................................CTCAACCAGCCACTGCGA........................................................................................................................................................................................................................................................................... 181.000.001.00----------------------------------------------------------
..........................................................................................................................................................................................TTACCCCCCCCACCCCCGG.......................................................................................................................................................................................................... 191.000.00------------------------1.00----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................AGACTTCTGGGCTTGCTGG............... 1920.500.50--------0.50--------------------------------------------------
...........................................................................................................................TCAACCAGCCACTGCATTT......................................................................................................................................................................................................................................................................... 190.440.000.220.22---------------------------------------------------------
...........................................................................................................................TCAACCAGCCACTGCAATT......................................................................................................................................................................................................................................................................... 190.110.000.11----------------------------------------------------------
...........................................................................................................................GCAGTGGCTGGTTGA............................................................................................................................................................................................................................................................................. 1590.110.11-0.11---------------------------------------------------------
...........................................................................................................................TCAACCAGCCACTGCTATT......................................................................................................................................................................................................................................................................... 190.110.000.11----------------------------------------------------------