ID: uc010uks.1_intron_2_0_chr15_72950980_f.3p
GENE: GOLGA6B(3)
chr15:72951635-72951884+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(16)
CELL-LINE 		(2)
LIVER 		(2)
OTHER 		(3)
SKIN 		(1)
TESTES

Sense strand
TGTGGCTGTGGGCAAAAACCAACAAAGACCCAAGTCCTCTGTCCTTGGGAGCTTGAAGAGGGTTGACCAGTTTGTGTTGCCATTGGTTCTGAGAATGTTGCCTTTAAAATCCATTCCTGGACCCTGCCTACCGCTTCCAGGTCTGGGGAATAGAGTTGAGGGGGCCACTCTCAGTCACCTGAATTTGACTCTCCCCACAGAAACAGCAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGTAACGTGATT
....................................................................................((..((.......((..(((((...((((..((((((....((.....)).))))))..))))...)))))..)).))..))....................................................................................
....................................................................................85................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR189784SRR189785SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR343335SRR343334SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGA.........2284.000.0084.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAA........2328.000.0028.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAAAA......2515.000.0015.00------------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGAAA.......3014.000.0014.00------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAGAAGA.........2711.000.0011.00------------------------------------
............................................................................................................................................GTCTGGGGAATAGAGTTGAGGGGGTT....................................................................................2610.000.00---10.00---------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAAA.......249.000.009.00------------------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGAAA.......278.000.008.00------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGA.......................................................................................228.000.00---6.00-----1.00-------------------1.00-------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGT......................................................................................237.000.00---7.00---------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGA.........287.000.006.00-----------1.00------------------------
.......................................................................................................................................................................................................................CAAGTGGAACATCAGCTGGAAGAAGA.........266.000.006.00------------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGAAAA......315.000.004.00-------1.00----------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGAA........265.000.005.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGC.........224.000.004.00------------------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAAGAAGA.........304.000.001.00-----2.00-1.00----------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGG.........................................................................................2003.003.00------------1.00-------1.001.00---------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGAA........293.000.003.00------------------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGAAAA......283.000.003.00------------------------------------
.......................................................................................................................................................................................................................CAAGTGGAACATCAGCTGGAAGAAGAA........273.000.003.00------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAGAAGAAA.......293.000.003.00------------------------------------
.......................................................................................................................................................................................................................CAAGTGGAACATCAGCTGGAAGAAGAAA.......283.000.003.00------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAGAAGAA........283.000.003.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAT........233.000.003.00------------------------------------
....................................................................................................................................................................................................................AAACAAGTGGAACATCAGCTGGAAGAAGAA........303.000.003.00------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAGAAGCA........282.000.002.00------------------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGCAAA......282.000.002.00------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGAA.......................................................................................2202.003.00---------------2.00---------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGA.........252.000.002.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGCA........232.000.002.00------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGGT.....................................................................................2402.001.00---------2.00---------------------------
..........................................................................................................................................................................................................................GTGGAACATCAGCTGGAAGAAGAAA.......252.000.001.00----------------1.00-------------------
.........................................................................................................................................................................................................................AGTGGAACATCAGCTGGAAGAAGCA........252.000.00-------2.00-----------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGC.........252.000.002.00------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGT.......................................................................................222.000.00---2.00---------------------------------
.........................................................................................................................................................................................................................AGTGGAACATCAGCTGGAAGAAGAAA.......262.000.002.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGTT........232.000.002.00------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGAAAA......................................................................................232.000.00---2.00---------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAGGA............191.000.001.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAAA............191.000.001.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAAAA...........201.000.001.00------------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAT..........271.000.00------1.00------------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAAGAAGCA........311.000.00------1.00------------------------------
.........................................................................................................................................................................................................................AGTGGAACATCAGCTGGAAGAAGCAA.......261.000.00-------1.00-----------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGT............191.000.001.00------------------------------------
............................................................................................................................................GTCTGGGGAATAGAGTTGAGGGT.......................................................................................231.000.00-----------------------1.00-------------
................................................................................................................................................GGGGAATAGAGTTGAGGGA.......................................................................................191.000.00----------------1.00--------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGC.........281.000.001.00------------------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAG..............251.000.00----------1.00--------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGTAA......................................................................................2301.003.00----------------------1.00--------------
.................................................................................................................................................................................................................AAGAAACAAGTGGAACATCAGCTGGAAGAAGA.........321.000.00------1.00------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGGCT....................................................................................2501.001.00-------------------1.00-----------------
.......................................................................................................................................................................................................................CAAGTGGAACATCAGCTGGAAGAAGC.........261.000.001.00------------------------------------
.................................................................................................................................................................................................................AAGAAACAAGTGGAACATCAGCTGAAG..............271.000.001.00------------------------------------
..............................................................................................................................................CTGGGGAATAGAGTTGAGGA........................................................................................201.000.00------------------------1.00------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGCAAA......311.000.001.00------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGGC.....................................................................................2401.001.00-------------1.00-----------------------
..............................................................................................................................................................................................................CAGAAGAAACAAGTGGAACATCAGCTGGGAG.............311.000.00-------------------------------1.00-----
............................................................................................................................................GTCTGGGGAATAGAGTTGAGGGGGT.....................................................................................251.000.00---------------------------------1.00---
....................................................................................................................................................................................................................AAACAAGTGGAACATCAGCTGGAAGAAGAAA.......311.000.00--------------------------------1.00----
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGG......................................................................................2301.001.00-------------1.00-----------------------
..............................................................................................................................................CTGGGGAATAGAGTTGAGGGGGT.....................................................................................231.000.00---------------------------1.00---------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAAT.......241.000.001.00------------------------------------
....................................................................................................................................................................................................................AAACAAGTGGAACATCAGCTGGAAGAAGA.........291.000.00--------1.00----------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGTAAA......281.000.001.00------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGAA......................................................................................231.000.00--------------------------1.00----------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGA.........................................................................................201.000.00-------------------------1.00-----------
.........................................................................................TGAGAATGTTGCCTTATAA..............................................................................................................................................191.000.00----------------------------------1.00--
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGA......................................................................................231.000.00------------------------------1.00------
..........................................................................................................................................................................................................................GTGGAACATCAGCTGGAAGAAGA.........231.000.00----------------1.00--------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAG........231.000.001.00------------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAATT.........281.000.001.00------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAA.............231.000.001.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAGGAA...........201.000.001.00------------------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAAGAAGAAA.......321.000.001.00------------------------------------
............................................................................................................................................................................................................................GGAACATCAGCTGGAAGAAGA.........211.000.001.00------------------------------------
.......................................................................................................................................................................................TTTGACTCTCCCCACGCAC................................................191.000.00-1.00-----------------------------------
............................................................................................................................................................................................CTCTCCCCACAGAAAAAG............................................181.000.00-----------------------------------1.00-
....................................................................................................................................................................................................................AAACAAGTGGAACATCAGCGGGA...............231.000.00----------1.00--------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAAGAAGAAAA......331.000.00------1.00------------------------------
..........................................................................................................................................................................................................................GTGGAACATCAGCTGGAAGAAGAAAA......261.000.00------------------1.00------------------
......................................................................................................................................TTCCAGGTCTGGGGAATAGAGTTGAGGGG.......................................................................................2950.200.200.20------------------------------------
.......................................................................................................................................................................................................GAAACAGCAGAAGAAACAAGTG.............................2270.140.14-----------------0.14-------------------
.............................................................................................................................................................................................................GCAGAAGAAACAAGTGGAACAT.......................2270.140.14-------0.14-----------------------------
............................................................................................................................................................................................................AGCAGAAGAAACAAGTGG............................1880.120.12-----------------0.12-------------------
............................................................................................................................................................................................................AGCAGAAGAAACAAGTGGA...........................1980.120.12-------0.12-----------------------------

Antisense strand
TGTGGCTGTGGGCAAAAACCAACAAAGACCCAAGTCCTCTGTCCTTGGGAGCTTGAAGAGGGTTGACCAGTTTGTGTTGCCATTGGTTCTGAGAATGTTGCCTTTAAAATCCATTCCTGGACCCTGCCTACCGCTTCCAGGTCTGGGGAATAGAGTTGAGGGGGCCACTCTCAGTCACCTGAATTTGACTCTCCCCACAGAAACAGCAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGTAACGTGATT
....................................................................................((..((.......((..(((((...((((..((((((....((.....)).))))))..))))...)))))..)).))..))....................................................................................
....................................................................................85................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR189784SRR189785SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR343335SRR343334SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................TTGACCAGTTTGTGTTGATAG....................................................................................................................................................................... 21247.000.00-192.0026.00-16.0010.00-----2.00--1.00----------------------
..............................................................TTGACCAGTTTGTGTTGATA........................................................................................................................................................................ 2013.000.00-11.002.00----------------------------------
.............................................................GTTGACCAGTTTGTGTTGAATA....................................................................................................................................................................... 229.000.00-8.001.00----------------------------------
..............................................................TTGACCAGTTTGTGTTGTAG........................................................................................................................................................................ 205.000.00-5.00-----------------------------------
.............................................................GTTGACCAGTTTGTGTTGAAT........................................................................................................................................................................ 215.000.00-5.00-----------------------------------
..............................................................TTGACCAGTTTGTGTTGA.......................................................................................................................................................................... 183.000.00-3.00-----------------------------------
.............................................................GTTGACCAGTTTGTGTTGAG......................................................................................................................................................................... 203.000.00-2.00------------1.00----------------------
...............................................................TGACCAGTTTGTGTTGCAAT....................................................................................................................................................................... 203.000.00-3.00-----------------------------------
..............................................................TTGACCAGTTTGTGTTGAT......................................................................................................................................................................... 192.000.00-2.00-----------------------------------
...............................................................TGACCAGTTTGTGTTGCAA........................................................................................................................................................................ 192.000.00-2.00-----------------------------------
..............................................................TTGACCAGTTTGTGTTGATAA....................................................................................................................................................................... 212.000.00-1.00--1.00--------------------------------
..............................................................TTGACCAGTTTGTGTTATAG........................................................................................................................................................................ 202.000.00-2.00-----------------------------------
.............................................................GTTGACCAGTTTGTGTTGA.......................................................................................................................................................................... 191.000.00-1.00-----------------------------------
.............................................................GTTGACCAGTTTGTGTTGTAG........................................................................................................................................................................ 211.000.00-1.00-----------------------------------
.............................................................GTTGACCAGTTTGTGTTGAACA....................................................................................................................................................................... 221.000.00-1.00-----------------------------------
..............................................................TTGACCAGTTTGTGTTGAAAG....................................................................................................................................................................... 211.000.00-1.00-----------------------------------
.............................................................GTTGACCAGTTTGTGTTAATA........................................................................................................................................................................ 211.000.00-1.00-----------------------------------
..............................................................TTGACCAGTTTGTGTTGAATA....................................................................................................................................................................... 211.000.00-1.00-----------------------------------
.............................................................GTTGACCAGTTTGTGTTGAA......................................................................................................................................................................... 201.000.00-1.00-----------------------------------
.........................................................................................................................CCCTGCCTACCGCTTC................................................................................................................. 161.000.00----------------------------1.00--------
..............................................................TTGACCAGTTTGTGTTGATCC....................................................................................................................................................................... 211.000.00-1.00-----------------------------------
....................................................................................................................................TCAACTCTATTCCCCAGACCTGGAAGC........................................................................................... 2740.750.750.75------------------------------------
.............................................................................................................................TATTCCCCAGACCTGGAAGCGGTAGGC.................................................................................................. 2740.500.500.50------------------------------------
...............................................................................TAAAGGCAACATTCTCAGAACCAATGG................................................................................................................................................ 2740.250.250.25------------------------------------
...................................TTCAAGCTCCCAAGGACAGAGG................................................................................................................................................................................................. 2240.250.250.25------------------------------------
............................................................................................................................TTCCCCAGACCTGGAAGCGGTAGGCA.................................................................................................... 2640.250.250.25------------------------------------
................................................................................................................................................................................................TCCACTTGTTTCTTCTGCTGTTTCTGTGGGG........................... 3170.140.140.14------------------------------------
.........................................................................................................................................................................................................TGATGTTCCACTTGTTTCTTCTGCTGTT..................... 2870.140.140.14------------------------------------
..................................................................................................................................................................................................TCCACTTGTTTCTTCTGCTGTTTCTGTGG........................... 2970.140.140.14------------------------------------
...................................................................................................................................................................GTGACTGAGAGTGGC........................................................................ 1590.110.11------------------------------------0.11