ID: uc010ujx.1_intron_5_0_chr15_68439039_f.3p
GENE: (6)
chr15:68445728-68445977+


(1)
B-CELL 		(9)
CELL-LINE 		(1)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(2)
SKIN

Sense strand
TAAAAACAGGTTTATGATCATCTCGGCAGCTTTTTGGTCAGGATTAAATGAATTACTGTTCATGAAAACACCTAAGACTGCTTGACACACAGTAGGTGTTTTAAGAAGTGTTAGTTTTCTTTCCCTATCATGGTGAGATTAAAATAGATGTACTATTTACTTACATATGTTGTTTGTTTTCTACTTCTTTTTTTTTCCAGAACTATTCCATGGCAGTATATCTTGTAAAACAGTTGTCCTCAACAGTTCT
...........................................................................................................(((.(((..........))).)))..((.((..((((.(((.(((......((..(((.....)))..))....))).))).))))..))))...................................................
.........................................................................................................106...........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189784SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTTTTG..................................................249.000.00-7.002.00--------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTTTAG..................................................249.000.004.003.002.00--------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTTG....................................................229.000.00-5.002.002.00-------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTTTG...................................................238.000.001.004.003.00--------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTTAG...................................................237.000.002.002.002.001.00-------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTG.....................................................215.000.001.003.001.00--------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTAG....................................................225.000.002.002.001.00--------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTTAT...................................................233.000.002.00-1.00--------------
....................................................................................................................................................................................CTACTTCTTTTTTTTCTTG...................................................193.000.002.00--1.00-------------
.....................................................................................................................................................................................TACTTCTTTTTTTTTCAAG..................................................192.000.00--2.00--------------
...................................................................................................................................................................................TCTACTTCTTTTTTTTTCG....................................................192.000.002.00----------------
......................................................................................................................................................................................ACTTCTTTTTTTTTCACTG.................................................192.000.00-1.001.00--------------
....................................................................................................................................................................................CTACTTCTTTTTTTTTCG....................................................182.000.00-1.00-1.00-------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTAG.....................................................212.000.002.00----------------
.................................................................................................................................................................................TTTCTACTTCTTTTTTTTTTAG...................................................222.000.001.001.00---------------
......................................................................................................................................................................................ACTTCTTTTTTTTTCCGGCG................................................202.000.00----2.00------------
...................................................................................................................................................................................TCTACTTCTTTTTTTTTATG...................................................201.000.00--1.00--------------
......................................................................................................................................................................................ACTTCTTTTTTTTTCCAGATG...............................................211.000.00----1.00------------
.........................................................................................................................................................................................................................ATATCTTGTAAAACAGTTGTCCTCAAC......2711.001.00-----1.00-----------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTCTTAG.................................................251.000.00---1.00-------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTCAG....................................................221.000.001.00----------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTGTTG..................................................241.000.00--1.00--------------
...................................................................................................................................................................................TCTACTTCTTTTTTTTCTG....................................................191.000.00---1.00-------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTCTTG.....................................................211.000.001.00----------------
.............................................................................................................................................................TACTTACATATGTTGTA............................................................................171.000.00-----1.00-----------
.....................................................................................................................................................................................................................CAGTATATCTTGTAAAACAGTTGT.............2411.001.00-------------1.00---
.....................................................................................................................................................................................TACTTCTTTTTTTTTCCAAATG...............................................221.000.00---1.00-------------
..................................................................................................................................................................................TTCTACTTCTTTTTTTTTCCATT.................................................231.000.00----1.00------------
.................................................................................................................................................................................TTTCTACTTCTTTTTTTGAG.....................................................201.000.00----1.00------------
.................................................................................................................................................................................................................................TAAAACAGTTGTCCTTTTG......191.000.00-----1.00-----------
....................................................................................................................................................................................CTACTTCTTTTTTTTTCAG...................................................191.000.001.00----------------
....................................................................................................................................................................................CTACTTCTTTTTTTTTAAG...................................................191.000.001.00----------------
........................................................................................................................................................................................................AACTATTCCATGGCAGTAT...............................1911.001.00----------1.00------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTTCAG..................................................241.000.001.00----------------
............................................................................................................................................................................................................ATTCCATGGCAGTATATCTTTTT.......................231.000.00---------------1.00-
....................................................................................................................................................................................CTACTTCTTTTTTTTTATTG..................................................201.000.00-1.00---------------
....................................................................................................................................................................................CTACTTCTTTTTTTTTCTTTG.................................................211.000.001.00----------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTGTTC....................................................221.000.00-----1.00-----------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTCTTG...................................................231.000.00---1.00-------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTTGAG..................................................241.000.00----1.00------------
......................................................................................................................................................................................ACTTCTTTTTTTTTCGTG..................................................181.000.00----1.00------------
..............................................................................................................TTAGTTTTCTTTCCCCTCC.........................................................................................................................191.000.00--------1.00--------
.................................................................................................................................................................................TTTCTACTTCTTTTTTTTTGAG...................................................221.000.00----1.00------------
..........................................................................................................AGTGTTAGTTTTCTTTTTCC............................................................................................................................201.000.00----1.00------------
..................................................................................................................................................................................TTCTACTTCTTTTTTTAAG.....................................................191.000.001.00----------------
.........................................................................................................................................................................................................................ATATCTTGTAAAACAGTTGTCCTCAA.......2611.001.00-----1.00-----------
..................................................................AACACCTAAGACTGCTTTTGC...................................................................................................................................................................211.000.00-----1.00-----------
...................................................................................................................................................................................TCTACTTCTTTTTTTTTCTTTG.................................................221.000.001.00----------------
......................................................................................................................................................................................ACTTCTTTTTTTTTCAACG.................................................191.000.00--1.00--------------
.................................................................................................................................................................................TTTCTACTTCTTTTTTTTTTTAG..................................................231.000.001.00----------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTCTAG...................................................231.000.001.00----------------
......................................................................................................................................................................................ACTTCTTTTTTTTTCCATG.................................................191.000.00--------1.00--------
...................................................................................................................................................................................TCTACTTCTTTTTTTATG.....................................................181.000.00--------1.00--------
.................................................................................................................................................................................TTTCTACTTCTTTTTTTTTTTTG..................................................231.000.00--1.00--------------
...................................................................................................................................................................................................................................AAACAGTTGTCCTCAACAGTT..2111.001.00--------------1.00--
.................................................................................................................................................................................TTTCTACTTCTTTTTTTTTG.....................................................201.000.00---1.00-------------
..........................................................................................................................................................................................................CTATTCCATGGCAGTAT...............................1711.001.00-----------1.00-----
.......................................................................................................................................................................................CTTCTTTTTTTTTCCATCG................................................191.000.00---1.00-------------
.................................................................................................................................................................................TTTCTACTTCTTTTTTTTTTG....................................................211.000.00--1.00--------------
.................................................................................................................................................................................TTTCTACTTCTTTTTTTTTAAG...................................................221.000.00--1.00--------------
......................................................................................................................................................................................ACTTCTTTTTTTTTCCAGTTTG..............................................221.000.00----1.00------------
......................................................................................................................................................................................ACTTCTTTTTTTTTCACTT.................................................191.000.00---1.00-------------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTCTG....................................................221.000.001.00----------------
......................................................................................................................................................................................ACTTCTTTTTTTTTCAGAG.................................................191.000.00----1.00------------
.................................................................................................................................................................................................................................TAAAACAGTTGTCCTCAAC......1911.001.00-------1.00---------
................................................................................................................................................................................TTTTCTACTTCTTTTTTTTTCTAG..................................................241.000.001.00----------------
...................................................................................................................................................................................TCTACTTCTTTTTTTTCTTG...................................................201.000.00---1.00-------------

Antisense strand
TAAAAACAGGTTTATGATCATCTCGGCAGCTTTTTGGTCAGGATTAAATGAATTACTGTTCATGAAAACACCTAAGACTGCTTGACACACAGTAGGTGTTTTAAGAAGTGTTAGTTTTCTTTCCCTATCATGGTGAGATTAAAATAGATGTACTATTTACTTACATATGTTGTTTGTTTTCTACTTCTTTTTTTTTCCAGAACTATTCCATGGCAGTATATCTTGTAAAACAGTTGTCCTCAACAGTTCT
...........................................................................................................(((.(((..........))).)))..((.((..((((.(((.(((......((..(((.....)))..))....))).))).))))..))))...................................................
.........................................................................................................106...........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189784SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
...............................................................................................GTGTTTTAAGAAGTGTATG........................................................................................................................................ 198.000.00------4.002.00-2.00-------
..............................................................................................................................................................................AAGAAGTAGAAAACA............................................................. 1501.001.00------------1.00----
...............................................................................................GTGTTTTAAGAAGTGTAT......................................................................................................................................... 181.000.00------1.00----------
..............................................................................................................................................................................AAAAAGAAGTAGAAAACA.......................................................... 1850.200.20----------------0.20