ID: uc010ufg.1_intron_6_0_chr15_50596331_r.3p
GENE: (1)
chr15:50596281-50596530-


(2)
B-CELL
(2)
BRAIN
(94)
BREAST
(5)
CELL-LINE
(2)
HELA
(2)
OTHER
(1)
SKIN

Sense strand
GATTTTCTTCTTCATTGAGAGTGTTTGGGAATTCTTCAAGATGTCTATGAAGAGGATGTGATAAGCATGAATCTAGGCATTTCTTTTGAGTTTTGAGTTGCTATGTAAACAGATAATGTAAAGAAAATCTGTTTACTATATAAACAGAAGTGTAGTAACAATAATGTAAATGTGGATTTTTTTTTTTTTCTGTGGTACAGCTGGGAACTTCTCCACTTCATCTAGCAGCACAGTATGGTCATTATTCCAC
.....................................................................................................................................................((......)).....((((..((..((............))..)).))))...................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR343337SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR343336SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)
SRR189782TAX577744(Rovira)
total RNA. (breast)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR343335SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191395(GSM715505)
25genomic small RNA (size selected RNA from t. (breast)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR343334SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR189787GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
.......................................................................................................................................................GTAGTAACAATAATGTCA.................................................................................183198.331.672.001.0013.678.675.673.003.337.673.003.003.674.003.331.675.672.673.003.670.673.671.671.673.333.002.674.674.337.001.001.332.331.335.67-1.005.672.671.001.331.002.332.001.330.671.674.000.674.001.670.332.671.672.000.331.000.332.002.672.00--2.332.671.000.670.331.00-3.00-1.330.331.001.670.670.671.000.670.670.33-2.671.001.330.67-1.67-0.331.000.330.67---------------------0.33--
.......................................................................................................................................................GTAGTAACAATAATGTCAAA...............................................................................20314.331.67-------0.33---------------5.67--4.00-0.33-----0.33----------0.33------0.33-0.33---------1.33------1.00----0.33---------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTCA.................................................................................1912.000.00----------1.00---------1.00-1.00-------2.001.00-----1.00-----1.00------------------------1.00--1.00--------1.00-----------------------1.00-----------
.......................................................................................................................................................GTAGTAACAATAATGTC..................................................................................1735.331.67-----0.33-----------0.33-----1.00--2.00--0.33----0.33------------0.33----------------0.33----------------------0.33----------------------------
.......................................................................................................................................................GTAGTAACAATAATGAAA.................................................................................185.000.00----1.00-----------1.00----------1.00-------------1.00---------------------1.00----------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTCAAA...............................................................................215.000.00-----------------------2.00--1.00-------------------------------------1.00-------------------------------------1.00-------------
.......................................................................................................................................................GTAGTAACAATAATGTCAA................................................................................1934.331.67-0.33----0.330.33---------------0.67-0.671.33-------------------------------------0.33------0.33--------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGTTTG.........193.000.00-----------------------------------------------------------3.00--------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGCCA.................................................................................183.000.00--------------------------------2.00--------1.00--------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTA..................................................................................1733.003.00---0.33-0.67------0.33----------1.33----0.33---------------------------------------------------------------------------------------
............................................................................................................................................................................TGGATTTTTTTTTTTTTCTGGAGG......................................................243.000.00---------------------------------2.00-----------------------------------1.00----------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGTTTGT.......2113.001.00------------------------------------------------------------2.00--------------------------------------------------1.00----
.......................................................................................................................................................GTAGTAACAATAATGAAGA................................................................................192.000.00-1.00----------------------------------------------------------------1.00-------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGT...................................................................................1631.671.67-----------------------0.33--1.00-------------------------------------0.33---------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCATA...............................................................................2031.671.67----------------------0.33----------------------------0.33--0.33-------0.33----0.33------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCTA................................................................................1931.331.67---0.33------------0.330.33--------------------------------------0.33-----------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTAGAT...............................................................................2031.333.00-----------------------1.00--0.33-----------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCGA................................................................................1931.331.67----------------------------0.33---------------------------------0.33-------------0.33---------0.33-----------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGTTTAC.......2111.001.00---------------------------------------------------------------------------------------------------------1.00----------
......................................................................................................................................................TGTAGTAACAATAATGTTAC................................................................................201.000.00---------------------------------------1.00----------------------------------------------------------------------------
...................................................................................................................................................................................TTTTTTTTTTCTGTGGTGGG...................................................201.000.00---------------------------------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGGGG.........191.000.00------------------------------------------------------------------------------------------------------------1.00-------
............................................................................................TTGAGTTGCTATGTATTCT...........................................................................................................................................191.000.00-------------------------------------------------------------------------------------------------------------1.00------
.................................................................................................................................................................................TTTTTTTTTTTTCTGTGGCTTG...................................................221.000.00---------------------------------1.00----------------------------------------------------------------------------------
...............................................................................................................................................................................................................................AGCAGCACAGTATGGTCAT........1911.001.00------------------------------------------------------------------------------------------------1.00-------------------
.................................................................................................................................................................................TTTTTTTTTTTTCTGTGGAGG....................................................211.000.00---------------------------------------------------------------------1.00----------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTAAAAAA.............................................................................2221.001.00--------------------1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGTCTAAG......221.000.00-----------------------------------------------------------1.00--------------------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGT...........1711.001.00------------------------------------------------------------1.00-------------------------------------------------------
..........................................................................................................................................................................TGTGGATTTTTTTTTTTTTCTGTAAT......................................................261.000.00---------------------------------1.00----------------------------------------------------------------------------------
............................................................................................................................................................................TGGATTTTTTTTTTTTTCTGGGT.......................................................231.000.00---------------------------------1.00----------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTGATA...............................................................................2031.001.67---------------------------0.33-------------------0.67--------------------------------------------------------------------
........................................................................................................................................................TAGTAACAATAATGTTAAA...............................................................................191.000.00--1.00-----------------------------------------------------------------------------------------------------------------
...........................................................................................TTTGAGTTGCTATGTATTCT...........................................................................................................................................201.000.00----------------------------------------------------------------------------------------------------1.00---------------
..........................................................................................................................................................................TGTGGATTTTTTTTTTTTTCTGGTG.......................................................251.000.00---------------------------------1.00----------------------------------------------------------------------------------
............................................................................................................................................................................TGGATTTTTTTTTTTTTCGC..........................................................201.000.00---------------------------------------------------------------------1.00----------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGGAAA................................................................................191.000.00-----------------1.00--------------------------------------------------------------------------------------------------
............................................................................................................................................................................TGGATTTTTTTTTTTTTCTGGAG.......................................................231.000.00---------------------------------1.00----------------------------------------------------------------------------------
............................................................................................................................................................................TGGATTTTTTTTTTTTTCTGTGGG......................................................241.000.00---------------------------------------------------------------------1.00----------------------------------------------
..............................................ATGAAGAGGATGTGAGTA..........................................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------------------------1.00---
............................................................................................................................................................................TGGATTTTTTTTTTTTTCTGCT........................................................221.000.00---------------------------------------------------------------------1.00----------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGTTATA.......2111.001.00------------------------------------------------------------1.00-------------------------------------------------------
...............................................................................................................................................................................ATTTTTTTTTTTTTCTGTGGGG.....................................................221.000.00---------------------------------1.00----------------------------------------------------------------------------------
.........................................................................................................................................................AGTAACAATAATGTAAAAAA.............................................................................201.000.00-----------------------------1.00--------------------------------------------------------------------------------------
........................................................................................................................................................TAGTAACAATAATGTAAAATAC............................................................................221.000.00-------------------------------------------------------------------------------------------------1.00------------------
.......................................................................................................................................................GTAGTAACAATAATGTAAA................................................................................1921.001.00----0.500.50--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGTGT.........1911.001.00-----------------------------------------------------------------------------------------------------------1.00--------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGTCTATA......221.000.00--------------------------------------------------------------------------------------------1.00-----------------------
.................................................................................................................................................AGAAGTGTAGTAACAATA.......................................................................................1811.001.00----------------------------------------------------------------------------------------------------------1.00---------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGATTG.........191.000.00-----------------------------------------------------------1.00--------------------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGTTT.........1911.001.00------------------------------------------------------------1.00-------------------------------------------------------
................................................................................................................................................................................TTTTTTTTTTTTTCTGTGGTGGGA..................................................241.000.00---------------------------------1.00----------------------------------------------------------------------------------
.................................................................................................................................................................................TTTTTTTTTTTTCTGTGGTGGG...................................................221.000.00---------------------------------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGATGA.........191.000.00--------------------------------------------------------------------------------------------1.00-----------------------
.............................................TATGAAGAGGATGTGGATG..........................................................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------------------1.00--------------
............................................................................................................................................................................TGGATTTTTTTTTTTTGTGG..........................................................201.000.00---------------------------------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGTT..........1811.001.00-----------------------------------------------------------1.00--------------------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGGATAG........201.000.00------------------------------------------------------------1.00-------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGATGG................................................................................191.000.00---------1.00----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTTA.................................................................................1830.671.67-----------------------------------0.33--------------------------------------0.33-----------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCACA...............................................................................2030.671.67--0.33------------------------------------0.33----------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCC.................................................................................1830.671.67-------------------------------------------0.33---0.33--------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCTGA...............................................................................2030.671.67--0.33--------------------------0.33--------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCCAA...............................................................................2030.671.67--0.33----------------0.33------------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCGG................................................................................1930.671.67--0.33------------------------------------------------------------------------0.33----------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCAG................................................................................1930.671.67----0.33---------------------------------------------0.33-----------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATG....................................................................................1660.500.50-----------------------0.33--0.17-----------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTAA.................................................................................1820.500.50-------------------------------------------------------------------------0.50------------------------------------------
................................................................................................................................................................................TTTTTTTTTTTTTCTGTGGTA.....................................................2120.500.50---------------------------------0.50----------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCGGG...............................................................................2030.331.67------------------------------------------------------0.33-------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCATC...............................................................................2030.331.67-------------------------------------------0.33------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCG.................................................................................1830.331.67---------------------------------------------0.33----------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCCGA...............................................................................2030.331.67-0.33------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCAAG...............................................................................2030.331.67--------------------0.33-----------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTTAAA...............................................................................2030.331.67---0.33----------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCTC................................................................................1930.331.67-------------------------------------------------0.33------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCGCA...............................................................................2030.331.67----------------0.33---------------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTACA................................................................................1930.333.00----------------------------------------------0.33---------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCAGA...............................................................................2030.331.67-------------------------------------------------------------------------0.33------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTTACA...............................................................................2030.331.67--------------------------------------------------------------------------------0.33-----------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCAGC...............................................................................2030.331.67--------0.33-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTA..................................................................................1830.330.33-------------------------0.33------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCCA................................................................................1930.331.67--------------------------------------------------------------------------------0.33-----------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTTTAT...............................................................................2030.331.67--------------------------------------------0.33-----------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTAGCA...............................................................................2030.333.00---------------------------------------0.33----------------------------------------------------------------------------

Antisense strand
GATTTTCTTCTTCATTGAGAGTGTTTGGGAATTCTTCAAGATGTCTATGAAGAGGATGTGATAAGCATGAATCTAGGCATTTCTTTTGAGTTTTGAGTTGCTATGTAAACAGATAATGTAAAGAAAATCTGTTTACTATATAAACAGAAGTGTAGTAACAATAATGTAAATGTGGATTTTTTTTTTTTTCTGTGGTACAGCTGGGAACTTCTCCACTTCATCTAGCAGCACAGTATGGTCATTATTCCAC
.....................................................................................................................................................((......)).....((((..((..((............))..)).))))...................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR343337SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR343336SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)
SRR189782TAX577744(Rovira)
total RNA. (breast)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR343335SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191395(GSM715505)
25genomic small RNA (size selected RNA from t. (breast)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR343334SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR189787GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
......................................................................................................................................................TGTAGTAACAATAATGTGA................................................................................. 19378.330.0041.3318.3323.337.6714.008.6711.677.339.335.005.3310.004.676.003.676.674.004.004.333.004.673.009.331.005.003.00-2.676.334.003.336.673.00-2.671.675.672.673.332.335.002.672.674.675.333.333.671.333.674.002.331.673.335.003.003.332.003.002.33--2.332.332.670.333.003.002.671.00-2.670.331.000.332.001.002.332.331.333.331.001.001.002.001.331.670.671.001.330.330.331.33---------------------0.33--
......................................................................................................................................................TGTAGTAACAATAATGGA.................................................................................. 186219.000.0018.0018.005.0010.008.003.009.003.005.005.009.003.003.005.004.008.003.003.007.006.005.002.004.00-2.002.00-1.004.004.006.001.00--6.002.002.001.004.001.003.003.001.001.00-1.003.00-2.001.001.00-1.00--1.001.00-2.00--1.00---2.00-2.00--1.00---1.002.00-1.002.00-1.00--------1.00---2.00----------------------
......................................................................................................................................................TGTAGTAACAATAATGA................................................................................... 17196.000.009.006.001.009.005.009.005.004.007.0010.006.004.0011.009.008.004.007.004.007.003.004.0010.00-1.004.004.001.001.002.003.00-1.003.00-1.00-1.004.001.001.00--5.001.001.00-1.00--2.001.003.00-1.002.002.001.00------1.00---------1.00----------1.001.00-1.001.00---------------------------
......................................................................................................................................................ACATTATTGTTACTACA................................................................................... 17344.6744.67---3.00-1.00-4.001.673.001.002.002.000.672.330.671.674.00-1.33-1.33--0.331.33-2.001.331.00----0.670.67---0.33-0.330.33--0.33-----0.33------------0.33------1.671.670.67--------0.33-------1.00------------------------0.33
......................................................................................................................................................TGTAGTAACAATAATGAA.................................................................................. 1821.000.002.001.00--1.003.00-1.00----1.002.00---1.00--1.00---2.00------1.00-------3.00-------2.00--------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTGAA................................................................................ 2018.330.001.671.67-0.330.670.33---0.330.671.00-0.33-0.331.33--1.000.670.33---0.33--0.33-0.670.33---0.67--0.330.670.670.33-------0.33---0.67--0.33----0.33----0.330.33-------------------0.33-0.33-0.33------------------------
......................................................................................................................................................TGTAGTAACAATAATGGAA................................................................................. 19618.000.001.004.00-1.001.002.00-----1.00------1.001.00-------1.00---------1.001.00---------1.00---------------------------------1.00-------1.00-------------------------
......................................................................................................................................................TGTAGTAACAATAATGAAA................................................................................. 194.000.00-----------------------------------1.00-1.00------1.00---------------------------1.00-------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTG.................................................................................. 181.670.00-------0.33------------------1.00---------------------------------------------------------------------------------------0.33-
......................................................................................................................................................TGTAGTAACAATAATGTGAAA............................................................................... 211.330.00-------0.33----------------------------0.33------0.33------0.33-----------------------------------------------------------------
..............................................................................................................................................................................................................................TAGCAGCACAGTATGTA........... 171.000.00--------------------------------------------------------------------------------------------------------------1.00-----
.......................................................................................................................................................GTAGTAACAATAATGCGA................................................................................. 181.000.00------------------------1.00-------------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTGC................................................................................. 191.000.00------0.67------0.33------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGGAAA................................................................................ 2061.000.00------1.00-------------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGAATA................................................................................ 2061.000.00-------1.00------------------------------------------------------------------------------------------------------------
................................................GAAGAGGATGTGATAGCCA....................................................................................................................................................................................... 191.000.00-------------------------------------------------------------------------------------------------------1.00------------
...................................................................................................................................................................................................................................GCACAGTATGGTCATGC...... 171.000.00---------------------------------------------------------------------------------------------------1.00----------------
.......................................................................................................................................................GTAGTAACAATAATGTCGA................................................................................ 1931.000.000.33--------------------0.33---------0.33------------------------------------------------------------------------------------
................................................................................................................................................................................TTTTTTTTTTTTTCTGTGGTAAG................................................... 231.000.00----------------------------------------------------------------------------------------------1.00---------------------
......................................................................................................................................................TGTAGTAACAATAATGTTA................................................................................. 191.000.000.33-----0.33---------------------------------------------0.33---------------------------------------------------------------
................................................................................................................................................................................CACAGAAAAAAAAAAAAA........................................................ 1801.001.00--------------------------------------------------------------------------------------------------1.00-----------------
............................................................................................................................................TAAACAGAAGTGTAGCTG............................................................................................ 181.000.00-----------------------------------------------------------------------------------------------1.00--------------------
......................................................................................................................................................TGTAGTAACAATAATGGCA................................................................................. 1961.000.00---------------------------------------------------------1.00----------------------------------------------------------
........................................................................................................................................................TAGTAACAATAATGTAAGA............................................................................... 191.000.00--------1.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGGCG................................................................................. 191.000.00-------------------------------1.00------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGGG.................................................................................. 1861.000.00--1.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTGGA................................................................................ 200.670.00-----------0.33--------------------------------------------------------------0.33-----------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTTAA................................................................................ 200.670.00-----------0.67--------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTGT................................................................................. 190.670.00----------0.33----------------------------------------0.33----------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTGGA................................................................................ 1930.670.00--0.33----------------------------0.33------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTGAG................................................................................ 200.330.00-----0.33--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTTACA............................................................................... 2030.330.00-------------------0.33------------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTTGA................................................................................ 1930.330.00-----------0.33--------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGTAGTAACAATAATGTGTCA............................................................................... 210.330.00-----0.33--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................GTAGTAACAATAATGTCC................................................................................. 1830.330.00----------------------------------------------------------------0.33---------------------------------------------------
.......................................................................................................................................................ACATTATTGTTACTAC................................................................................... 1630.330.33----------------------------------------------------------------0.33---------------------------------------------------