ID: uc010uew.1_intron_2_0_chr15_48513194_f.3p
GENE: SLC12A1(3)
chr15:48518473-48518722+


(8)
BRAIN
(3)
BREAST
(6)
CELL-LINE
(1)
FIBROBLAST
(2)
OTHER
(1)
TESTES
(4)
UTERUS

Sense strand
ACCATCCTTCATCATAATGAGCAGTTCTCTGACTTGGTCTTTATGCCAGGCAAACCAGTTTCTCCTTAGCACAAAGAAACCCCGTTGGAGCCCGAGGCATGGACCTGAAAACTTAAGTTAAAGGCAGTGTAGTTTGCAGCAATAGGGAATCCAAGGAAGAAAAGTAAAATGCAATATCTTCTATCTTTCATTGCTAACAGGTCTTGGAGTTCTCATAATTCTTCTTTCCACCATGGTAACTTCTATTACT
...................................................................................((((((((.....((((...(((...(((....)))..)))..)))).)))).))))..............................................................................................................
......................................................................71.......................................................................144........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577580(Rovira)
total RNA. (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782TAX577739(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577744(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
.........................................................................................................................AGGCAGTGTAGTTTGTTGA..............................................................................................................195.000.001.00-1.001.001.00----1.00---------------
.........................................................................................................................AGGCAGTGTAGTTTGCTTAT.............................................................................................................205.000.00-1.002.00---1.001.00-----------------
.........................................................................................................................AGGCAGTGTAGTTTGCG................................................................................................................175.000.001.003.00--1.00--------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTGGT.............................................................................................................203.000.00--2.001.00---------------------
.........................................................................................................................AGGCAGTGTAGTTTGAT................................................................................................................173.000.001.001.00---1.00-------------------
.........................................................................................................................AGGCAGTGTAGTTTGATTG..............................................................................................................193.000.00--------1.00-1.00--------1.00-----
.........................................................................................................................AGGCAGTGTAGTTTGCAGATT............................................................................................................212.000.001.00-----1.00------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTGCT.............................................................................................................202.000.00---1.00---1.00-----------------
.........................................................................................................................AGGCAGTGTAGTTTGCTGAG.............................................................................................................202.000.00------1.00--1.00---------------
.........................................................................................................................AGGCAGTGTAGTTTGCTGT..............................................................................................................192.000.00----1.00------1.00-------------
.........................................................................................................................AGGCAGTGTAGTTTGCA................................................................................................................1741.251.250.250.50--0.250.25-------------------
.........................................................................................................................AGGCAGTGTAGTTTGCAGATTT...........................................................................................................221.000.00------------1.00------------
...........................................................................GAAACCCCGTTGGAGGC..............................................................................................................................................................171.000.00--------------1.00----------
.........................................................................................................................AGGCAGTGTAGTTTGTTTG..............................................................................................................191.000.001.00------------------------
.......................................................................................................................AAAGGCAGTGTAGTTAGC.................................................................................................................181.000.00-----1.00-------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTGC..............................................................................................................191.000.00-----------1.00-------------
.........................................................................................................................AGGCAGTGTAGTTTGCGT...............................................................................................................181.000.001.00------------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTT...............................................................................................................181.000.00---1.00---------------------
.........................................................................................................................AGGCAGTGTAGTTTGTCG...............................................................................................................181.000.001.00------------------------
.........................................................................................................................AGGCAGTGTAGTTTGCAGAGTT...........................................................................................................221.000.00--1.00----------------------
.........................................................................................................................AGGCAGTGTAGTTTGATGG..............................................................................................................191.000.00-1.00-----------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTGTT.............................................................................................................201.000.00---1.00---------------------
.......................................................................................................................AAAGGCAGTGTAGTTAGCT................................................................................................................191.000.00--------1.00----------------
..................................................................................................................................................................................................TAACAGGTCTTGGAGGGAA.....................................191.000.00-----------------------1.00-
.........................................................................................................................AGGCAGTGTAGTTTGCTTA..............................................................................................................191.000.00-------1.00-----------------
.........................................................................................................................AGGCAGTGTAGTTTGCTGCG.............................................................................................................201.000.00------1.00------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTGTA.............................................................................................................201.000.00--------------------1.00----
..............................................................................................................ACTTAAGTTAAAGGCGCAG.........................................................................................................................191.000.00----------1.00--------------
.........................................................................................................................AGGCAGTGTAGTTTGTGGG..............................................................................................................191.000.00-1.00-----------------------
.........................................................................................................................AGGCAGTGTAGTTTGTGCT..............................................................................................................191.000.001.00------------------------
.........................................................................................................................AGGCAGTGTAGTTTGCGCT..............................................................................................................191.000.001.00------------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTTTT.............................................................................................................201.000.00-1.00-----------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTTT..............................................................................................................191.000.00-----------------1.00-------
.........................................................................................................................AGGCAGTGTAGTTTGTTTC..............................................................................................................191.000.00----1.00--------------------
.........................................................................................................................AGGCAGTGTAGTTTGCAGAGT............................................................................................................211.000.00---------------------1.00---
.........................................................................................................................AGGCAGTGTAGTTTGCAGTAC............................................................................................................211.000.00-----1.00-------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTTGT.............................................................................................................201.000.00-1.00-----------------------
.........................................................................................................................AGGCAGTGTAGTTTGCAGAG.............................................................................................................201.000.00------------1.00------------
.........................................................................................................................AGGCAGTGTAGTTTGTGGT..............................................................................................................191.000.001.00------------------------
.........................................................................................................................AGGCAGTGTAGTTTGAG................................................................................................................171.000.00-1.00-----------------------
.........................................................................................................................AGGCAGTGTAGTTTGCTCG..............................................................................................................191.000.00-----1.00-------------------
.........................................................................................................................AGGCAGTGTAGTTTGTTGG..............................................................................................................191.000.00---------------1.00---------
.........................................................................................................................AGGCAGTGTAGTTTGTC................................................................................................................171.000.001.00------------------------
.........................................................................................................................AGGCAGTGTAGTTTGCATAGT............................................................................................................2140.501.25--0.25---------------------0.25
.........................................................................................................................AGGCAGTGTAGTTTGCATA..............................................................................................................1940.251.250.25------------------------
.........................................................................................................................AGGCAGTGTAGTTTGCATAG.............................................................................................................2040.251.25---0.25---------------------

Antisense strand
ACCATCCTTCATCATAATGAGCAGTTCTCTGACTTGGTCTTTATGCCAGGCAAACCAGTTTCTCCTTAGCACAAAGAAACCCCGTTGGAGCCCGAGGCATGGACCTGAAAACTTAAGTTAAAGGCAGTGTAGTTTGCAGCAATAGGGAATCCAAGGAAGAAAAGTAAAATGCAATATCTTCTATCTTTCATTGCTAACAGGTCTTGGAGTTCTCATAATTCTTCTTTCCACCATGGTAACTTCTATTACT
...................................................................................((((((((.....((((...(((...(((....)))..)))..)))).)))).))))..............................................................................................................
......................................................................71.......................................................................144........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577580(Rovira)
total RNA. (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782TAX577739(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577744(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
...........................................................................................................................................................GAAGAAAAGTAAAATGTTG............................................................................ 193.000.00-------------2.00--------1.00--
.....................................................................................................................................................TCCAAGGAAGAAAAGTGAC.................................................................................. 191.000.00------------------1.00------
...............................................................GGTTTCTTTGTGCTAAGG......................................................................................................................................................................... 1811.001.00----------------1.00--------