ID: uc010udd.1_intron_1_0_chr15_42510032_r
GENE: (18)
chr15:42509982-42510570-


(3)
B-CELL 		(9)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(3)
HELA 		(5)
LIVER 		(3)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
GATGATTTGAAGTGGGTAGAAGAGAATGTTCCTTCTTCTGTGACAGATGTGTAAGTTTTTGAATGATTACCACAAGAATCCTATTTCAAAGTTAGTACTACTTTGTTATTATTTTAAATGAGCAAGTTATACTCATGAAAATACAAGATACTGAAAAATAATTAAAAGAATAGGAATAATCCGCAAACAAAATTAATTGGGTTTATTCATTCAGATGACATTTCTGCTTAGAAAGATTTAGCTATGTAGTATATCTTAAAATGAATGGGATACTCCTTTTGAAATTTTTAGTTCCTTTCCAGGGCTATAATTTTAATGAAACATTGGTCCTGTTGCATTGCAAAATACGTTTTTTTTCTATACAATTTCTGTAACTGTTGCTTATTGTATTTGCTGTTTATTTTTCCTAAAAGGGCCATTAATAAAATGCAAATCTTAGATAATTATAAAGCTTTTAATTGCATTATTCCATTGTCTTTTATGAACCATTTATGGCTTTATTTTACATTGTTCAATTTAGTATTTCTCTCTCTTTGCAGAGCACTTCCAGCCCTTCTGGATTCAGATGAGGTTGGTACTCAATTCACGT
..............................................................................................................................................................................................................................................................................................................................................................................((((((((....(((.....)))..(((((...........(((((.((((((.....(((((........(((((((.((((.((........)).))))...))))))).........)))))))))))...)))))............)))))...........))))))))................................................
.....................................................................................................................................................................................................................................................................................................................................................................358.........................................................................................................................................................................................546.........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784TAX577588(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR189782SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038853(GSM458536)
MELB. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
..........................................................................................................................................................................................................................................................................................................................................................................CAATTTCTGTAACTGTATC................................................................................................................................................................................................................1912.000.0012.00---------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................AATTTCTGTAACTGTATC................................................................................................................................................................................................................1811.000.0011.00---------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATTGTCTTTTATGAACCATTTATGGCTTTATTTTACATTGTTCAATTTAGTATTTCTCTCTCTTTGCAG..................................................7315.005.00-5.00--------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................AATTTCTGTAACTGTTC.................................................................................................................................................................................................................173.000.00-------2.00--------------------1.00-----------------
........GAAGTGGGTAGAAGAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00------2.00---------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCTCTTTGCACACG...............................................192.000.00---2.00------------------------------------------
................................................................................................................................................................................................................................................................................................TAGTTCCTTTCCAGGCAC...........................................................................................................................................................................................................................................................................................182.000.00---------2.00------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATTCAGATGAGGAACG..............202.000.00----------------1.00----------1.00------------------
.....................................................................................................................................................................................................................................................................................................................................................................CTATACAATTTCTGTAACTGTTGC................................................................................................................................................................................................................2411.001.00----------------------------------1.00-----------
........................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTTATTTTTCCCCT...................................................................................................................................................................................181.000.00-----------------------------------1.00----------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGGCTTTATTTTACCTCA...............................................................................231.000.00-----------1.00----------------------------------
.........................ATGTTCCTTCTTCTGTGACAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------1.00----------------------
.........AAGTGGGTAGAAGAGAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------1.00----------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTCAGATGAGGAAA...............181.000.00-----------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGATTCAGATGAGGAAC...............221.000.00----------1.00-----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGGCTTTATTTTTATT.................................................................................211.000.00--1.00-------------------------------------------
......TTGAAGTGGGTAGAAGAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------1.00---------------------------------------
.....TTTGAAGTGGGTAGAAGGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.001.00----------1.00-----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGGCTTTATTTTACTTA................................................................................221.000.00--1.00-------------------------------------------
.....TTTGAAGTGGGTAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1721.001.00--------------1.00-------------------------------
........................................................................................................................................................................................................................................................................................................................................................ATACGTTTTTTTTCTGTG...................................................................................................................................................................................................................................181.000.00--1.00-------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................AATTTCTGTAACTGTGTC................................................................................................................................................................................................................181.000.001.00---------------------------------------------
.......TGAAGTGGGTAGAAGAGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------1.00---------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTTATTTTTCTGTG...................................................................................................................................................................................191.000.00--------1.00-------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGGCTTTATTTTACTCTA...............................................................................231.000.00--1.00-------------------------------------------
...........................GTTCCTTCTTCTGTGACAGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------1.00------------------------
............................................................................................................................................................................................................................................................................................................................................................................ATTTCTGTAACTGTTGCTTATT...........................................................................................................................................................................................................2211.001.00----------------------1.00-----------------------
...................................................TAAGTTTTTGAATGATCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---1.00------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCCAGCCCTTCTGGATTCAGATG.....................2611.001.00--------------------------------------1.00-------
.ATGATTTGAAGTGGGTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------1.00------------------------------
................................................................................................................................................................................................................................................................................CTCCTTTTGAAATTTCCGT..........................................................................................................................................................................................................................................................................................................191.000.00------------------------------1.00---------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTGGATTCAGATGAGGA.................211.000.00-------------------------------1.00--------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTCAGATGAGGAACG..............191.000.00-------------------------1.00--------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCTCTCTCTTTGCAG..................................................2020.500.50------------------------------------------0.50---
...GATTTGAAGTGGGTAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.500.50-----------------------------------------0.50----
....................................................................ACCACAAGAATCCTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50---------------------------------------0.50------
..........AGTGGGTAGAAGAGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50-------------------------------------------0.50--
....................................................................................................................................................................................................................................................................................................................................TGGTCCTGTTGCATTGC........................................................................................................................................................................................................................................................1720.500.50----------------------------------------0.50-----
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGGCTTTATTTTAC...................................................................................1840.500.50------------0.50---------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGGCTTTATTTTA....................................................................................1850.400.40--0.40-------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGGCTTTATTTTACTCT................................................................................2140.250.50------------0.25---------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGGCTTTATTTTATCTC................................................................................2250.200.40------------0.20---------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGGCTTTATTTTATTTC................................................................................2250.200.40-----------0.20----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGGCTTTATTTTATCT.................................................................................2150.200.40------------0.20---------------------------------

Antisense strand
GATGATTTGAAGTGGGTAGAAGAGAATGTTCCTTCTTCTGTGACAGATGTGTAAGTTTTTGAATGATTACCACAAGAATCCTATTTCAAAGTTAGTACTACTTTGTTATTATTTTAAATGAGCAAGTTATACTCATGAAAATACAAGATACTGAAAAATAATTAAAAGAATAGGAATAATCCGCAAACAAAATTAATTGGGTTTATTCATTCAGATGACATTTCTGCTTAGAAAGATTTAGCTATGTAGTATATCTTAAAATGAATGGGATACTCCTTTTGAAATTTTTAGTTCCTTTCCAGGGCTATAATTTTAATGAAACATTGGTCCTGTTGCATTGCAAAATACGTTTTTTTTCTATACAATTTCTGTAACTGTTGCTTATTGTATTTGCTGTTTATTTTTCCTAAAAGGGCCATTAATAAAATGCAAATCTTAGATAATTATAAAGCTTTTAATTGCATTATTCCATTGTCTTTTATGAACCATTTATGGCTTTATTTTACATTGTTCAATTTAGTATTTCTCTCTCTTTGCAGAGCACTTCCAGCCCTTCTGGATTCAGATGAGGTTGGTACTCAATTCACGT
..............................................................................................................................................................................................................................................................................................................................................................................((((((((....(((.....)))..(((((...........(((((.((((((.....(((((........(((((((.((((.((........)).))))...))))))).........)))))))))))...)))))............)))))...........))))))))................................................
.....................................................................................................................................................................................................................................................................................................................................................................358.........................................................................................................................................................................................546.........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784TAX577588(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR189782SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038853(GSM458536)
MELB. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
........................AATGTTCCTTCTTCTGTGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 217.000.00----2.003.00------------------1.00-------1.00-------------
........................AATGTTCCTTCTTCTGTGGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 211.000.00----1.00-----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCACTTCCAGCAAG................................... 181.000.00-------------------1.00--------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCAATTTAGTATCAGA.............................................................. 191.000.00--------------------------1.00-------------------
................................................................................................................................................................................................................................................................................................................................ACATTGGTCCTGTTGGCGG.......................................................................................................................................................................................................................................................... 191.000.00-------------1.00--------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................CTATACAATTTCTGTTGAA..................................................................................................................................................................................................................... 191.000.00--------------------1.00-------------------------
........................................................................................................................................................GAAAAATAATTAAAAGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00------------------------------------1.00---------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATTATTCCATAGGA................................................................................................................. 191.000.00---------------------------------1.00------------
...........................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTTTTCCTAAATTTA.............................................................................................................................................................................. 201.000.00--------1.00-------------------------------------
.....TTTGAAGTGGGTAGAAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 221.000.00-------------------------------------1.00--------
.................................................................................................................................................................................................................................................................................................................................GCAACAGGACCAATG............................................................................................................................................................................................................................................................. 1530.330.33--------------------------------------------0.33-
.............................TGTCACAGAAGAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1680.120.12---------------------------------------------0.12