| (13) CELL-LINE | (1) FIBROBLAST | (2) HELA | (2) SKIN | (1) UTERUS | (1) XRN.ip |
| CCAGCACTCAGCATACTGTCTAATATAGTAATTATTTGTTATCAAATGCACTTGAAATGATTATTTTTGTCTTGATAGATAGTTTATCATTTATTTCTGATTTTTTTTTAATTTCCTGAGTTCTTTAATTTGCCTAAAGTTTAAGAAAACTGATATTATGCCTAATATTTGTGTTAGAGTAACTGAATTTGTCATTTTAGGGTAAAATATTTGGAGTACCTTTTAATGCACTGCCCCATTCTGCTGTACC ......................................................................................(((.(((.(((((((...................(((((.(((((.....))))).))))).((.(((((((....))))))).)))))))))))).)))................................................................ .....................................................................................86................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330867(SRX091705) tissue: skin psoriatic involveddisease state:. (skin) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR029131(GSM416760) MCF7. (cell line) | SRR363674(GSM830251) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM359176(GSM359176) hela_chip_smrna_pure. (hela) | SRR207116(GSM721078) Nuclear RNA. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................GTAACTGAATTTGTCATTTTAGA................................................. | 23 | 21.00 | 0.00 | 11.00 | - | 5.00 | - | 1.00 | - | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGTAACTGAATTTGTCATTTTAGA................................................. | 24 | 2 | 8.00 | 1.00 | 7.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................GTAACTGAATTTGTCATTTTAGAA................................................ | 24 | 6.00 | 0.00 | 4.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .................................................................................................................................................................................AGTAACTGAATTTGTCATTTTAGAA................................................ | 25 | 2 | 5.00 | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - |
| ...................................................................................................ATTTTTTTTTAATTTCCTGAGTTCTTTAACTTG...................................................................................................................... | 33 | 3.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ..............................................................................ATAGTTTATCATTTATTTCTGATTTTTTTCT............................................................................................................................................. | 31 | 3.00 | 0.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................CTGATTTTTTTTTAATTTCCTGAGTTCTTT............................................................................................................................ | 30 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TTATTTCTGATTTTTTTACGC........................................................................................................................................... | 21 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................AGTTTATCATTTATTTCTGATTTTTTTTC............................................................................................................................................. | 29 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGTAACTGAATTTGTCATTTTAG.................................................. | 23 | 2 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................ATAGTTTATCATTTATTTCTGATTCCT................................................................................................................................................. | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGTAACTGAATTTGTCATTTTAGTTTC.............................................. | 27 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................ATTTATTTCTGATTTTTTTTTAATTTCCGAG................................................................................................................................... | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................TTTCTGATTTTTTTTTAATTTCCTGAGTTCTC............................................................................................................................. | 32 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................ATAGTTTATCATTTATTTCTGATTTTTTA............................................................................................................................................... | 29 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TAACTGAATTTGTCATTTTAGA................................................. | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................GTGTTAGAGTAACTGAATTTGTCATTTTAG.................................................. | 30 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TTAATGCACTGCCCCATTCTGCTGTA.. | 26 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ....................................................................................................................................................ACTGATATTATGCCTAATATT................................................................................. | 21 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| ..................................................................................................................................................................................................................................TGCACTGCCCCATTCTGC...... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CCAGCACTCAGCATACTGTCTAATATAGTAATTATTTGTTATCAAATGCACTTGAAATGATTATTTTTGTCTTGATAGATAGTTTATCATTTATTTCTGATTTTTTTTTAATTTCCTGAGTTCTTTAATTTGCCTAAAGTTTAAGAAAACTGATATTATGCCTAATATTTGTGTTAGAGTAACTGAATTTGTCATTTTAGGGTAAAATATTTGGAGTACCTTTTAATGCACTGCCCCATTCTGCTGTACC ......................................................................................(((.(((.(((((((...................(((((.(((((.....))))).))))).((.(((((((....))))))).)))))))))))).)))................................................................ .....................................................................................86................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330867(SRX091705) tissue: skin psoriatic involveddisease state:. (skin) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR029131(GSM416760) MCF7. (cell line) | SRR363674(GSM830251) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM359176(GSM359176) hela_chip_smrna_pure. (hela) | SRR207116(GSM721078) Nuclear RNA. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................TCTGATTTTTTTTTAACCG........................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |