ID: uc010tyt.1_intron_3134_0_chr14_106740939_r
GENE: (411)
chr14:106740889-106741297-


(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(14)
BREAST
(16)
CELL-LINE
(7)
CERVIX
(3)
HEART
(2)
HELA
(11)
LIVER
(4)
OTHER
(1)
RRP40.ip
(12)
SKIN
(1)
TESTES
(4)
UTERUS

Sense strand
CACGGTTCTGCAGGCTGTACAGGAAGTGTAGTGGCTTCTCCTTCTGGGGAGAGTCAGGAAAGTTAGGATCATGGCAGAAGACAAAGGGGAGCAGGTGCGTCACATGGCCAGACCAGGAGCCACAGGAAGCAGGGAAGGTCTACACACTGTTAGGCAACTAGATCTTATGAGAACTCACACACTGTCATGAGAACAGCACCAGGAGTTTGTTCTAAACCATTCATGAAAGACCCACCCCATGTCCCAGTCATCTCCCACCAGGTCCCACCTTCACAATTGAGGATTATAATACAACATGAGATTTGGGGCAGGACACAGATCCAAACCACATCAGATACACATTGTGAAATGCTCATCATGGCCAAGGTAATTTGTATATCCATTTTCTCATGGAGCTACCATTTTATTT
..................................................................................................................................................................................................................................................(((((..(((((((....))......(((((....)))))...............))))))))))......................................................................................................
............................................................................................................................................................................................................................................237...................................................................307....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040024(GSM532909)
G613N. (cervix)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR189786SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040029(GSM532914)
G026T. (cervix)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)
SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532879(GSM532879)
G659N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532887(GSM532887)
G761N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATAAG..........................................................................................................2086.000.0039.002.002.003.001.002.001.003.001.00--3.00-1.001.00--2.002.00----1.001.00----1.001.001.001.00--1.001.001.001.001.00---1.00-1.00-1.00-1.00-1.001.00---1.001.00----1.00-1.001.00-1.00---------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATAA...........................................................................................................1934.000.002.004.00-2.004.003.004.00--2.003.00--1.001.002.00-------1.00---------1.00-------1.00--------1.00------------1.00--------1.00----
....................................................................................................................................................................................................................................................................................................................................................................................TGTATATCCATTTTCGGA...................184.000.00--4.00--------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATCAG..........................................................................................................203.000.003.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATAC...........................................................................................................192.000.00-----------------------------------------------------------1.001.00----------------
............................................................................................................................................................................................................................................................................................TATAATACAACATGATAAG..........................................................................................................192.000.00---------1.00---1.00---------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATAAA..........................................................................................................202.000.001.00--------------------------1.00-------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATAAT..........................................................................................................201.000.001.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATTA...........................................................................................................191.000.001.00----------------------------------------------------------------------------
.......CTGCAGGCTGTACAGGAAGGGC............................................................................................................................................................................................................................................................................................................................................................................................221.000.00---------------------1.00-------------------------------------------------------
..................ACAGGAAGTGTAGTGGTA.....................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------------------------------------------1.00--------
......TCTGCAGGCTGTACAGGAAGGAC............................................................................................................................................................................................................................................................................................................................................................................................231.000.00-----------------------------------------------------------------------1.00-----
......TCTGCAGGCTGTACAGGAAGGCG............................................................................................................................................................................................................................................................................................................................................................................................231.000.00--------------------1.00--------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATTAT..........................................................................................................201.000.001.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGCTCT...........................................................................................................191.000.00---------------------------------------------------------------------1.00-------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATTAG..........................................................................................................201.000.001.00----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................TCCCAGTCATCTCCCGAA......................................................................................................................................................181.000.00-------------------1.00---------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGATAG...........................................................................................................191.000.001.00----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................GTCCCACCTTCACAATCA..................................................................................................................................181.000.00-------------------1.00---------------------------------------------------------
........................................................................................................................................................................................................................................CACCCCATGTCCCAGTCATCTCCC.........................................................................................................................................................2411.001.00--------------------------------------------1.00--------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGTTAT...........................................................................................................191.000.001.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGCTGA...........................................................................................................191.000.00--------------------------1.00--------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGAGAAGA.........................................................................................................2140.500.250.25-------------------------------------------------------------------------0.25--
.....................................................TCAGGAAAGTTAGGATCATGGCAGAAGACAAAGGGGA...............................................................................................................................................................................................................................................................................................................................3720.500.50-------------------------------------------------------------------------0.50---
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGAGA............................................................................................................1840.250.25------------------------0.25----------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGAGAAGCT........................................................................................................2240.250.25--------------------------0.25--------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGAGAAAT.........................................................................................................2140.250.25---------------------------------------------------------------------------0.25-
...........................................................................................................................................................................................................................................................................................TTATAATACAACATGAGAAGC.........................................................................................................2140.250.25-------------------------0.25---------------------------------------------------
............................................................................................................................................TACACACTGTTAGGC..............................................................................................................................................................................................................................................................1570.140.14----------------------------------------------------------------------------0.14

Antisense strand
CACGGTTCTGCAGGCTGTACAGGAAGTGTAGTGGCTTCTCCTTCTGGGGAGAGTCAGGAAAGTTAGGATCATGGCAGAAGACAAAGGGGAGCAGGTGCGTCACATGGCCAGACCAGGAGCCACAGGAAGCAGGGAAGGTCTACACACTGTTAGGCAACTAGATCTTATGAGAACTCACACACTGTCATGAGAACAGCACCAGGAGTTTGTTCTAAACCATTCATGAAAGACCCACCCCATGTCCCAGTCATCTCCCACCAGGTCCCACCTTCACAATTGAGGATTATAATACAACATGAGATTTGGGGCAGGACACAGATCCAAACCACATCAGATACACATTGTGAAATGCTCATCATGGCCAAGGTAATTTGTATATCCATTTTCTCATGGAGCTACCATTTTATTT
..................................................................................................................................................................................................................................................(((((..(((((((....))......(((((....)))))...............))))))))))......................................................................................................
............................................................................................................................................................................................................................................237...................................................................307....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040024(GSM532909)
G613N. (cervix)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR189786SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040029(GSM532914)
G026T. (cervix)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)
SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532879(GSM532879)
G659N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532887(GSM532887)
G761N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
.....................................................................................................................................................................................................................................................................................................................AGGACACAGATCCAAACCACTG.............................................................................. 224.000.00--------1.00---2.00---------------------------1.00------------------------------------
.....................................................................................................................................................................................................................................................................................................................AGGACACAGATCCAAACCTG................................................................................ 202.000.00----------------------------------1.00-----------------------------------1.00------
.........................................................................................................................................................................................................................................................................CACCTTCACAATTGATTAG............................................................................................................................. 191.000.00----------------------------------------------------------1.00------------------
..CGGTTCTGCAGGCTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------1.00----------------------------------
.....................................................................................................................................................................................................................................................................................................................AGGACACAGATCCAACTG.................................................................................. 181.000.00-------------------------------------------------------------1.00---------------
.....................................................................................................................................................................................................................................................................................................................AGGACACAGATCCAAACCCTG............................................................................... 211.000.00--------1.00--------------------------------------------------------------------
..CGGTTCTGCAGGCTGCGT..................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-------------------------1.00---------------------------------------------------
.................................................................................................................................................................................................................................................TCCCAGTCATCTCCCATCT..................................................................................................................................................... 191.000.00---------------------1.00-------------------------------------------------------
.......................................................................................................................................................................................................................................................TCATCTCCCACCAGGTCCCAAA............................................................................................................................................ 221.000.00----------------------------------------------1.00------------------------------
....................................................................................................................................................................................................................................................................................................................CAGGACACAGATCCAGGGC.................................................................................. 191.000.00----------------------------1.00------------------------------------------------
......................................................................................................................................................................................................................................................GTCATCTCCCACCAGGTCGAA.............................................................................................................................................. 211.000.00--------------------1.00--------------------------------------------------------
.....................................................................................................................................................TTAGGCAACTAGATCTGGA................................................................................................................................................................................................................................................. 191.000.00------------------------------------------------1.00----------------------------