ID: uc010tyt.1_intron_2162_0_chr14_106543606_r
GENE: (1383)
chr14:106543556-106543862-


(1)
B-CELL
(3)
BRAIN
(1)
BREAST
(11)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(3)
OTHER
(1)
SKIN

Sense strand
TAGAAATACTTTATTTCTCCTTCATTTATGAAGCTTAGTTTAGAAGGATACAAAATTAATTTCTGACATAGAATTTTTTCTTTTTTTTTCTTTAAGTAGTCTGAAATTGGGAGTCCAATCTCTTCTATCTTATAACTTTATGCTGAGAAGTACACTGTCAGCATGATAGAATTTCAGATAAATTATTAGACACTTTTCTATTGTGAATTTTAGGATTTTTTTCTTCCTATTTACTTTAGATAGTCTGAGGACTATAGATCTTGGTAATGTCTGTCTTCCAGTGTCTTCTCATGTAGTTTTCTGAACC
........................................................................................(((.(((...(((((((((((((((........))))))........(((((((((((..((....)).))))))))).)).)))))))))...)))..))).....................................................................................................................
......................................................................71..........................................................................................................................195..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784GSM532876(GSM532876)
G547T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577745(Rovira)
total RNA. (breast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
...........................................................................TTTTCTTTTTTTTTCTTCCAG...................................................................................................................................................................................................................2162.000.0034.0021.001.00--2.004.00---------------
..........................................................................................................................................................................ATTTCAGATAAATTATTAAAA....................................................................................................................2136.000.00----19.00--17.00--------------
..........................................................................TTTTTCTTTTTTTTTCTTCCAG...................................................................................................................................................................................................................229.000.002.002.002.00--1.002.00---------------
.........................................................................TTTTTTCTTTTTTTTTCTTTAAG...................................................................................................................................................................................................................2313.003.00-----2.001.00---------------
.............................................................................TTCTTTTTTTTTCTTTAAATG.................................................................................................................................................................................................................213.000.00--1.00--1.001.00---------------
.......................................................................AATTTTTTCTTTTTTTTTAGCG......................................................................................................................................................................................................................222.000.00---2.00------------------
.........................................................................TTTTTTCTTTTTTTTTCTTTACC...................................................................................................................................................................................................................232.000.00--1.001.00------------------
..........................................................................TTTTTCTTTTTTTTTCTTCAG....................................................................................................................................................................................................................212.000.00-----1.001.00---------------
.............................................................................TTCTTTTTTTTTCTTTAAGTGGAG..............................................................................................................................................................................................................242.000.00---2.00------------------
.......................................................................AATTTTTTCTTTTTTTTTAGC.......................................................................................................................................................................................................................212.000.00--2.00-------------------
.......................................................................AATTTTTTCTTTTTTTTTCTTG......................................................................................................................................................................................................................222.000.00---2.00------------------
.........................................................................TTTTTTCTTTTTTTTTCTCAGG....................................................................................................................................................................................................................222.000.00---1.00----1.00-------------
.........................................................................TTTTTTCTTTTTTTTTCTTCTGG...................................................................................................................................................................................................................232.000.00---2.00------------------
..........................................................................TTTTTCTTTTTTTTTCTTTAAG...................................................................................................................................................................................................................2241.251.250.50----0.250.50---------------
...........................................................................TTTTCTTTTTTTTTCTTTAAATG.................................................................................................................................................................................................................231.000.00------1.00---------------
.........................................................................TTTTTTCTTTTTTTTTCTCTGG....................................................................................................................................................................................................................221.000.00--1.00-------------------
......................................................................................................................................................................................................................ATTTTTTTCTTCCTATTTTTG........................................................................211.000.00---------------1.00------
.............................................................................TTCTTTTTTTTTCTTTACTC..................................................................................................................................................................................................................201.000.00--1.00-------------------
.........................................................................................................................................................................................................................................................GACTATAGATCTTGGC..........................................161.000.00---------1.00------------
..............................................................................TCTTTTTTTTTCTTTAACTAG................................................................................................................................................................................................................211.000.00-----1.00----------------
.........................................................................TTTTTTCTTTTTTTTTCTTTAAACG.................................................................................................................................................................................................................251.000.00-----1.00----------------
............................................................................TTTCTTTTTTTTTCTTTAAGTAGAGAC............................................................................................................................................................................................................271.000.00---1.00------------------
........................................................................ATTTTTTCTTTTTTTTTCTTTAAATG.................................................................................................................................................................................................................261.000.00--------1.00-------------
........................................................................ATTTTTTCTTTTTTTTTCTGTTG....................................................................................................................................................................................................................231.000.00---1.00------------------
..........................................................................................................................................................................ATTTCAGATAAATTATTAACA....................................................................................................................211.000.00----1.00-----------------
..........................................................................TTTTTCTTTTTTTTTCTTTACC...................................................................................................................................................................................................................221.000.00---1.00------------------
.........................................................................TTTTTTCTTTTTTTTTCTTTCTCT..................................................................................................................................................................................................................241.000.00--1.00-------------------
.........................................................................TTTTTTCTTTTTTTTTCTTTATG...................................................................................................................................................................................................................231.000.00--1.00-------------------
.....................................................................................................TGAAATTGGGAGTCCGACG...........................................................................................................................................................................................191.000.00-------------------1.00--
...........................................................................TTTTCTTTTTTTTTCTTTATTG..................................................................................................................................................................................................................221.000.00--1.00-------------------
.........................................................................TTTTTTCTTTTTTTTTCTTCCAT...................................................................................................................................................................................................................231.000.00--------1.00-------------
.........................................................................TTTTTTCTTTTTTTTTCTTTAATG..................................................................................................................................................................................................................241.000.00------1.00---------------
............................................................................TTTCTTTTTTTTTCTTTAAATG.................................................................................................................................................................................................................221.000.00--------1.00-------------
.........................................................................TTTTTTCTTTTTTTTTCTTTCCAG..................................................................................................................................................................................................................241.000.001.00---------------------
.........................................................................TTTTTTCTTTTTTTTTCTTTCCTG..................................................................................................................................................................................................................241.000.00-----1.00----------------
.....................................................................AGAATTTTTTCTTTTTTTTTTTCC......................................................................................................................................................................................................................241.000.00--1.00-------------------
..........................................................................TTTTTCTTTTTTTTTCTTCACG...................................................................................................................................................................................................................221.000.00-----1.00----------------
........................................................................ATTTTTTCTTTTTTTTTCTCCC.....................................................................................................................................................................................................................221.000.00---1.00------------------
.............................................................................TTCTTTTTTTTTCTTTAAGTCT................................................................................................................................................................................................................221.000.00--------1.00-------------
.............................................................................TTCTTTTTTTTTCTTTACCT..................................................................................................................................................................................................................201.000.00--------1.00-------------
........................................................................ATTTTTTCTTTTTTTTTCTGTGC....................................................................................................................................................................................................................231.000.00--1.00-------------------
.............................................................................TTCTTTTTTTTTCTTTAAACAG................................................................................................................................................................................................................221.000.00------1.00---------------
...........................................................................TTTTCTTTTTTTTTCTTTAAACTA................................................................................................................................................................................................................241.000.00--------1.00-------------
.........................................................................TTTTTTCTTTTTTTTTCTTCAAG...................................................................................................................................................................................................................231.000.00-----1.00----------------
.........................................................................TTTTTTCTTTTTTTTTCTTTATACC.................................................................................................................................................................................................................251.000.00---1.00------------------
............................................................................TTTCTTTTTTTTTCTTTAAACAG................................................................................................................................................................................................................231.000.00-----1.00----------------
..............................................................................TCTTTTTTTTTCTTTAACATT................................................................................................................................................................................................................211.000.00------1.00---------------
..........................................................................TTTTTCTTTTTTTTTCTTCGG....................................................................................................................................................................................................................211.000.00--1.00-------------------
..........................................................................TTTTTCTTTTTTTTTCTTTCGC...................................................................................................................................................................................................................221.000.00--1.00-------------------
.........................................................................TTTTTTCTTTTTTTTTCTTTCTAG..................................................................................................................................................................................................................241.000.00-----1.00----------------
.............................................................................TTCTTTTTTTTTCTTTATCA..................................................................................................................................................................................................................201.000.00--------1.00-------------
.........................................................................TTTTTTCTTTTTTTTTCTTAATG...................................................................................................................................................................................................................231.000.00-1.00--------------------
........................................................................ATTTTTTCTTTTTTTTTCTTTGTA...................................................................................................................................................................................................................241.000.00--1.00-------------------
........................................................................ATTTTTTCTTTTTTTTTCGGCT.....................................................................................................................................................................................................................221.000.00---1.00------------------
................................................................................................................................................................................................................TTTAGGATTTTTTTCTTTGGT..............................................................................211.000.00--1.00-------------------
.........................................................................TTTTTTCTTTTTTTTTCTTTCTC...................................................................................................................................................................................................................231.000.00--1.00-------------------
..........................................................................TTTTTCTTTTTTTTTCTTTCCG...................................................................................................................................................................................................................221.000.00---1.00------------------
..........................................................................TTTTTCTTTTTTTTTCTTTCCAG..................................................................................................................................................................................................................231.000.00------1.00---------------
.........................................................................TTTTTTCTTTTTTTTTCTTAGTT...................................................................................................................................................................................................................231.000.00------1.00---------------
.........................................................................TTTTTTCTTTTTTTTTCTTATTG...................................................................................................................................................................................................................231.000.00-----1.00----------------
..........................................................................TTTTTCTTTTTTTTTCTTCAC....................................................................................................................................................................................................................211.000.00--------1.00-------------
..........................................................................TTTTTCTTTTTTTTTCTTTAATG..................................................................................................................................................................................................................231.000.00------1.00---------------
...........................................................................TTTTCTTTTTTTTTCTTCAAG...................................................................................................................................................................................................................211.000.001.00---------------------
.........................................................................TTTTTTCTTTTTTTTTCTACAA....................................................................................................................................................................................................................221.000.001.00---------------------
...............................................................TGACATAGAATTTTTTGTC.................................................................................................................................................................................................................................191.000.00-----------1.00----------
........................................................................ATTTTTTCTTTTTTTTTCTTGCG....................................................................................................................................................................................................................231.000.00---1.00------------------
............................................................................TTTCTTTTTTTTTCTTTACTG..................................................................................................................................................................................................................211.000.00-----1.00----------------
..........................................................................TTTTTCTTTTTTTTTCTTTAAC...................................................................................................................................................................................................................221.000.00--1.00-------------------
.........................................................................TTTTTTCTTTTTTTTTCTTTAGGG..................................................................................................................................................................................................................241.000.00---1.00------------------
........................................................................ATTTTTTCTTTTTTTTTCTTGGAG...................................................................................................................................................................................................................241.000.00---1.00------------------
........................................................................ATTTTTTCTTTTTTTTTCTAAAG....................................................................................................................................................................................................................231.000.00-1.00--------------------
.............................................................................TTCTTTTTTTTTCTTTAATCAG................................................................................................................................................................................................................221.000.00-----1.00----------------
............................................................................TTTCTTTTTTTTTCTTTATGAC.................................................................................................................................................................................................................221.000.00---1.00------------------
.........................................................................TTTTTTCTTTTTTTTTCTTCAG....................................................................................................................................................................................................................221.000.00--1.00-------------------
.........................................................................TTTTTTCTTTTTTTTTCTCCG.....................................................................................................................................................................................................................211.000.00------1.00---------------
..........................................................................TTTTTCTTTTTTTTTCTTTCTCG..................................................................................................................................................................................................................231.000.00-----1.00----------------
..................................................................................................................................................GAAGTACACTGTCAGGCT...............................................................................................................................................181.000.00--------------1.00-------
.........................................................................TTTTTTCTTTTTTTTTCTTTCGGC..................................................................................................................................................................................................................241.000.00--1.00-------------------
...........................................................................TTTTCTTTTTTTTTCTTTAAG...................................................................................................................................................................................................................2190.330.330.22-----0.11---------------
.....................................................................................................................................................................................................................................................TGAGGACTATAGATC...............................................1590.330.33--------------------0.33-
...................................................AAAATTAATTTCTGACA...............................................................................................................................................................................................................................................1780.120.12---------------------0.12

Antisense strand
TAGAAATACTTTATTTCTCCTTCATTTATGAAGCTTAGTTTAGAAGGATACAAAATTAATTTCTGACATAGAATTTTTTCTTTTTTTTTCTTTAAGTAGTCTGAAATTGGGAGTCCAATCTCTTCTATCTTATAACTTTATGCTGAGAAGTACACTGTCAGCATGATAGAATTTCAGATAAATTATTAGACACTTTTCTATTGTGAATTTTAGGATTTTTTTCTTCCTATTTACTTTAGATAGTCTGAGGACTATAGATCTTGGTAATGTCTGTCTTCCAGTGTCTTCTCATGTAGTTTTCTGAACC
........................................................................................(((.(((...(((((((((((((((........))))))........(((((((((((..((....)).))))))))).)).)))))))))...)))..))).....................................................................................................................
......................................................................71..........................................................................................................................195..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784GSM532876(GSM532876)
G547T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577745(Rovira)
total RNA. (breast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
.............................GAAGCTTAGTTTAGACAA.................................................................................................................................................................................................................................................................... 181.000.00---------1.00------------
.........................................................................TTTTTTCTTTTTTTTTCCCCC..................................................................................................................................................................................................................... 211.000.00----------1.00-----------
......................................................................................................................................................................................................................................................GAGGACTATAGATCTGGTT.......................................... 191.000.00------------1.00---------
....................................................................................................................................TAACTTTATGCTGAGGGC............................................................................................................................................................. 181.000.00-----------------1.00----
...........................................................................TTTTCTTTTTTTTTCTTTAGAT.................................................................................................................................................................................................................. 221.000.00----------------1.00-----
.................................................................................................................................................................................................................................................................................................CATGTAGTTTTCTGACCGA 191.000.00------------------1.00---
................................................................................................................................................GAGAAGTACACTGTCATTT................................................................................................................................................ 191.000.00-------------1.00--------