ID: uc010tyt.1_intron_1906_0_chr14_106496820_r
GENE: (1639)
chr14:106496770-106497236-


(1)
AGO2.ip
(6)
B-CELL
(1)
BRAIN
(3)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(5)
LIVER
(1)
OTHER
(1)
RRP40.ip
(7)
SKIN
(1)
XRN.ip

Sense strand
TTATAGATAAAAATTTATCAAGTAGGTTGATAGTGCCATTTGGGACTCTTATATCTTTACCTATTTAATCATTGCTTGTTTTCTCAATCACAATGAGTGTTGATTTCTCCATGTTCTATACATGTTAGTCTATTTTCTGTTCCAAATCCATTTATTAGGTCTTTTAAAATGGATTTTGGAAAAGTTGATCCTATTATTTTATGCAATATTTCACTTGAGTTGCAAAGGTATTCTTTTTATGATTATTTTGTCTGAAATTAACATAGCTATTCAAGTTTTCTTTGGTTTATATTTTCATGGTCTATATTTTTCCATCTTATTTCTTCTCTTTGTGAATATGTTAAGAAGTTTTCTTGGAGAAAGATAATTGCTGGGTCTTTTTTTTTTTTAGTCAACTATGAGGAATTATTTTTTAATGATATTACCCTTTTGTCCAATAATGGTTGTTTTGTCTTTTTACAATAATA
....................................................................((((((.(((......)))...)))))).....((((....(((((.....)))))..)))).................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150...........................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189784SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................................AAATGGATTTTGGAAATAGG.........................................................................................................................................................................................................................................................................................2043.000.007.005.00-5.00--3.001.004.001.001.00-2.001.00-1.002.00---1.001.00-1.00-1.001.001.001.00-1.00-1.001.00-------
......................................................................................................................................................................AAATGGATTTTGGAAATAG..........................................................................................................................................................................................................................................................................................1911.000.002.004.00-1.00--1.00--2.00--------------1.00----------------
......................................................................................................................................................................AAATGGATTTTGGAAATA...........................................................................................................................................................................................................................................................................................186.000.001.00------2.00-----1.00-----1.00----------------1.00----
...................................................................................................................................................................................................................................................................................................................................................................................TGGGTCTTTTTTTTTTTTCTTC..........................................................................223.000.00--2.00--1.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTTGTTTTGTATAA...........192.000.00----------2.00------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTATTTTTTAGAC.................................................202.000.00----2.00------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................TGGGTCTTTTTTTTTTTTATCGC.........................................................................231.000.00--1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTATTTTTTACAG.................................................201.000.00----1.00------------------------------------
...............................................................................................................TGTTCTATACATGTTAGTCT................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------1.00----------------------
............................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTAGTCAACGATC...................................................................201.000.00-----------1.00-----------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTATTTTTTACAC.................................................201.000.00----1.00------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................TGGGTCTTTTTTTTTTTTACCTC.........................................................................231.000.00--1.00--------------------------------------
.......................................................................................................................................................................................................................................................................................CTTTGGTTTATATTTTCTCAG.......................................................................................................................................................................211.000.00-----------------1.00-----------------------
......................................................................................................................................................................AAATGGATTTTGGAAGTAG..........................................................................................................................................................................................................................................................................................191.000.00---1.00-------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................TGGGTCTTTTTTTTTTTTGTAC..........................................................................221.000.00--1.00--------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................TTGCTGGGTCTTTTTTTTTTTTTTAC..........................................................................261.000.00--1.00--------------------------------------
......................................................................................................................................................................AAATGGATTTTGGAAATC...........................................................................................................................................................................................................................................................................................181.000.00-------1.00---------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTATTTTTTAAATTT...............................................221.000.00-------------------------------------1.00---
......................................................................................................................................................................AAATGGATTTTGGAAAAAAA.........................................................................................................................................................................................................................................................................................201.000.00----------------------1.00------------------
...................................................................................................................................................................................................................................................................................................................................................................................TGGGTCTTTTTTTTTTTACTG...........................................................................211.000.00-----1.00-----------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTGTTTTGTCTTCTGC........191.000.00--1.00--------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................TGGGTCTTTTTTTTTTTTAGTCT.........................................................................231.000.00-----1.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................TCTTATTTCTTCTCTTTGTTGA...................................................................................................................................221.000.00---------------1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................................................TGGGTCTTTTTTTTTTTTCATC..........................................................................221.000.00-----1.00-----------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................TGGGTCTTTTTTTTTTTTAG............................................................................2011.001.00--1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTATTTTTTACACT................................................211.000.00----1.00------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................TTGCTGGGTCTTTTTTTTTTTTT.............................................................................231.000.00-----1.00-----------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................GGGTCTTTTTTTTTTTTGTTT..........................................................................211.000.00--------------------------------------1.00--
.......................................................................................................................................................................................................................................................................................CTTTGGTTTATATTTTCCCAT.......................................................................................................................................................................211.000.00-----------------1.00-----------------------

Antisense strand
TTATAGATAAAAATTTATCAAGTAGGTTGATAGTGCCATTTGGGACTCTTATATCTTTACCTATTTAATCATTGCTTGTTTTCTCAATCACAATGAGTGTTGATTTCTCCATGTTCTATACATGTTAGTCTATTTTCTGTTCCAAATCCATTTATTAGGTCTTTTAAAATGGATTTTGGAAAAGTTGATCCTATTATTTTATGCAATATTTCACTTGAGTTGCAAAGGTATTCTTTTTATGATTATTTTGTCTGAAATTAACATAGCTATTCAAGTTTTCTTTGGTTTATATTTTCATGGTCTATATTTTTCCATCTTATTTCTTCTCTTTGTGAATATGTTAAGAAGTTTTCTTGGAGAAAGATAATTGCTGGGTCTTTTTTTTTTTTAGTCAACTATGAGGAATTATTTTTTAATGATATTACCCTTTTGTCCAATAATGGTTGTTTTGTCTTTTTACAATAATA
....................................................................((((((.(((......)))...)))))).....((((....(((((.....)))))..)))).................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150...........................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189784SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
.................TCAAGTAGGTTGATAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................... 192.000.00-----------1.00-------------------1.00---------
.............................................................................................................................................................................................................................................................................................................................TATTTCTTCTCTTTGTTGTC.................................................................................................................................. 201.000.00----------------------------------1.00------
....................................................................................................................................................................TAAAATGGATTTTGGTTC............................................................................................................................................................................................................................................................................................. 181.000.00--------------1.00--------------------------
..................................................................................................................................................................................................................................................................................................................................................TGTTAAGAAGTTTTCCCA............................................................................................................... 181.000.00-----------------------------1.00-----------
................................................................................................................................TCTATTTTCTGTTCCAAAG................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------------------------1.00-----
....................................................................................................................................................................TAAAATGGATTTTGGCTA............................................................................................................................................................................................................................................................................................. 181.000.00--------------1.00--------------------------
............................................................................ATTGTGATTGAGAAAACA..................................................................................................................................................................................................................................................................................................................................................................................... 1830.330.33---------------------------------------0.33-
..........................................................................................AATCAACACTCATTG.......................................................................................................................................................................................................................................................................................................................................................................... 1560.330.33-----------0.33-----------------------------
..............................................................................ATTGTGATTGAGAAAA..................................................................................................................................................................................................................................................................................................................................................................................... 1670.140.14----------------------------------------0.14