ID: uc010tyt.1_intron_1898_0_chr14_106495031_r
GENE: (1647)
chr14:106494981-106495319-


(4)
AGO2.ip
(3)
B-CELL
(3)
BREAST
(19)
CELL-LINE
(5)
CERVIX
(2)
HEART
(4)
LIVER
(1)
OTHER
(1)
RRP40.ip
(6)
SKIN

Sense strand
TTAGTTGTCGTTCTCACTTTTCCTTTGGATTTTCCTGCTCCCTGGAAAAGGTAAATGTGGTCTCCGTGACCTCAATTCAAGGGCTGAAGCCCTTTCCCTGTAGCTCAGCTGGGGCTCAGGCTGTGGCTACTGCAGCCATGTGGAAGAGGCTGAAGGGACTTTCTTCACTCTCCTTGCTCAGGACCATCCACTGTATTGTGTATAGGCTTCTCTGGAAATGCAAGTGGCCATTTGTAGTGAAAGAAATATGTTTGTCTGGTTAAAATGGGAGGTGGATGTAGAGTTAATTGGCTGCTACATAAACTGTCCTTCTCCACCAGTGCTTTTAGGATGAGATTG
.............................................................................................................................................((.((((..((((((.....))))))))))))..((((.....((((((((.((((.....((((((((.(((.((((((.....)).)))).))).)))............))))).....))))...))))))))..)))).......................................................
..........................................................................................................................................139...................................................................................................................................................289................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR343336SRR040034(GSM532919)
G001N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR040038(GSM532923)
G531N. (cervix)
SRR029130(GSM416759)
DLD2. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR343337SRR029128(GSM416757)
H520. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................AAGAGGCTGAAGGGACTAG.................................................................................................................................................................................1921489.5011.501389.50-35.5018.0013.5012.008.503.504.501.000.500.501.001.50-----------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAGT................................................................................................................................................................................202954.5011.50872.50-32.5016.007.006.506.005.503.501.501.00--0.50----1.50--0.50---------------------------
................................................................................................................................................AGAGGCTGAAGGGACTAGT................................................................................................................................................................................194333.505.75332.00--------0.25-0.50-0.50----0.25------------------------------
.................................................................................................................................................GAGGCTGAAGGGACTAGT................................................................................................................................................................................18171.000.00171.00------------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTAG.................................................................................................................................................................................184170.255.75153.00-5.503.001.752.752.50-0.500.25-0.75-----------------------------------0.25-
.................................................................................................................................................GAGGCTGAAGGGACTAG.................................................................................................................................................................................1780.000.0079.00-1.00----------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTA..................................................................................................................................................................................18249.5011.5028.50-8.506.001.501.501.50-------------2.00----------------------------
................................................................................................................................................AGAGGCTGAAGGGACTATC................................................................................................................................................................................19437.005.75-37.00-----------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGATC...................................................................................................................................................................................17029.003.00-29.00-----------------------------------------------
.................................................................................................................................................GAGGCTGAAGGGACTAGTC...............................................................................................................................................................................1925.000.0025.00------------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAGTC...............................................................................................................................................................................21221.5011.5010.50-3.001.502.50-1.500.500.500.501.00--------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTATC................................................................................................................................................................................20216.0011.50-16.00-----------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACT...................................................................................................................................................................................17211.5011.507.50---------1.502.50-------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAATC...............................................................................................................................................................................21210.0011.50-10.00-----------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTAGTC...............................................................................................................................................................................2047.755.755.501.25-------1.00---------------------------------------
........................................................................................................................................................................................................................................................................ATGGGAGGTGGATGTTTAC........................................................197.000.00---------------2.001.00--2.00------------1.00-1.00--------------
................................................................................................................................................AGAGGCTGAAGGGACT...................................................................................................................................................................................1645.755.755.75------------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGAC....................................................................................................................................................................................1645.505.503.251.00----------1.25------------------------------------
.................................................................................................................................................GAGGCTGAAGGGACTATC................................................................................................................................................................................185.000.00-5.00-----------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAA.................................................................................................................................................................................1923.5011.501.00-1.50-0.50--0.50-----------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTAATC...............................................................................................................................................................................2043.255.75-3.25-----------------------------------------------
.................................................................................................CTGTAGCTCAGCTGGATAG...............................................................................................................................................................................................................................193.000.00-----------------1.00-------1.00--1.00--------------------
................................................................................................................................................AGAGGCTGAAGGGACCATC................................................................................................................................................................................193.000.00-3.00-----------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACGATC................................................................................................................................................................................193.000.00-3.00-----------------------------------------------
........................................................................................................................................................................................................................................................................ATGGGAGGTGGATGTTTA.........................................................183.000.00----------------1.00------------1.001.00------------------
...............................................................................................................................................AAGAGGCTGAAGGGA.....................................................................................................................................................................................1503.003.00-------1.00----1.00--------1.00---------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAC.................................................................................................................................................................................1922.5011.502.50------------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAGG................................................................................................................................................................................2022.0011.502.00------------------------------------------------
.................................................................................................CTGTAGCTCAGCTGGCA.................................................................................................................................................................................................................................172.000.00--------------2.00----------------------------------
..................................................................................................TGTAGCTCAGCTGGGAGA...............................................................................................................................................................................................................................182.000.00---------------------------------1.00------1.00--------
................................................................................................................................................AGAGGCTGAAGGGACTTC.................................................................................................................................................................................182.000.00-2.00-----------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGAATC..................................................................................................................................................................................1802.003.00-2.00-----------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAAT................................................................................................................................................................................2022.0011.500.50-0.50---1.00------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTGGT................................................................................................................................................................................1941.255.751.25------------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTAGTA...............................................................................................................................................................................2041.255.75-1.25-----------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACATC.................................................................................................................................................................................1941.255.50-1.25-----------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTAGC................................................................................................................................................................................1941.255.751.25------------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAT.................................................................................................................................................................................1921.0011.50------0.500.50-----------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTGGT................................................................................................................................................................................2021.0011.501.00------------------------------------------------
..............................................................................................TCCCTGTAGCTCAGCGGTA..................................................................................................................................................................................................................................191.000.00------------------------------------1.00------------
...............................................................................................................................................AAGAGGCTGAAGGGACTTGT................................................................................................................................................................................201.000.001.00------------------------------------------------
..................................................................................................TGTAGCTCAGCTGGGAGAG..............................................................................................................................................................................................................................191.000.00-------------------------------------1.00-----------
............................................................................................................................................TGGAAGAGGCTGAAGGCAA....................................................................................................................................................................................191.000.00-----------------1.00-------------------------------
..............................................AAAGGTAAATGTGGTCTCTGCC...............................................................................................................................................................................................................................................................................221.000.00---------------------------------------1.00---------
..............................................................................................................................................................................................................................................................................GGTGGATGTAGAGTTCTG...................................................181.000.00------------------------------------------1.00------
...............................................................................................................................................AAGAGGCTGAAGGGACTTG.................................................................................................................................................................................191.000.001.00------------------------------------------------
...................................................................................................................TCAGGCTGTGGCTACTAGAG............................................................................................................................................................................................................201.000.00-----------------------------------1.00-------------
................................................................................................................................................AGAGGCTGAAGGGACTAA.................................................................................................................................................................................1841.005.75--0.75--------0.25-------------------------------------
.................................................................................................................................................GAGGCTGAAGGGACTAGG................................................................................................................................................................................181.000.001.00------------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACCAGT................................................................................................................................................................................191.000.001.00------------------------------------------------
.................................................................................................CTGTAGCTCAGCTGGTAGA...............................................................................................................................................................................................................................191.000.00--------------------------1.00----------------------
................................................................................................CCTGTAGCTCAGCTGG...................................................................................................................................................................................................................................1630.670.67--------------0.33-------------------------------0.33--
...............................................................................................................................................AAGAGGCTGAAGGGACTAGC................................................................................................................................................................................2020.5011.500.50------------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTAGG................................................................................................................................................................................1940.505.750.50------------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAGTA...............................................................................................................................................................................2120.5011.50--0.50----------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTCGT................................................................................................................................................................................2020.5011.500.50------------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTATGC...............................................................................................................................................................................2120.5011.50---------------------------------------------0.50---
...............................................................................................................................................AAGAGGCTGAAGGGACTGG.................................................................................................................................................................................1920.5011.500.50------------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTCGTC...............................................................................................................................................................................2120.5011.50----------0.50--------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTACT................................................................................................................................................................................2020.5011.50------0.50------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACTAGAC...............................................................................................................................................................................2120.5011.500.50------------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACAA..................................................................................................................................................................................1840.505.500.25--0.25---------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACCAG.................................................................................................................................................................................1940.505.500.50------------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTA..................................................................................................................................................................................1740.255.75--0.25----------------------------------------------
...............................................................................................................................................AAGAGGCTGAAGGGACGAG.................................................................................................................................................................................1940.255.500.25------------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTAGAA...............................................................................................................................................................................2040.255.75---------------------------------------------0.25---
...............................................................................................................................................AAGAGGCTGAAGGGACAAGT................................................................................................................................................................................2040.255.500.25------------------------------------------------
................................................................................................................................................AGAGGCTGAAGGGACTAGTT...............................................................................................................................................................................2040.255.75------------------0.25------------------------------
..................................................................................................................................................................................................................TCTGGAAATGCAAGTG.................................................................................................................1650.200.20------------------------------------------------0.20

Antisense strand
TTAGTTGTCGTTCTCACTTTTCCTTTGGATTTTCCTGCTCCCTGGAAAAGGTAAATGTGGTCTCCGTGACCTCAATTCAAGGGCTGAAGCCCTTTCCCTGTAGCTCAGCTGGGGCTCAGGCTGTGGCTACTGCAGCCATGTGGAAGAGGCTGAAGGGACTTTCTTCACTCTCCTTGCTCAGGACCATCCACTGTATTGTGTATAGGCTTCTCTGGAAATGCAAGTGGCCATTTGTAGTGAAAGAAATATGTTTGTCTGGTTAAAATGGGAGGTGGATGTAGAGTTAATTGGCTGCTACATAAACTGTCCTTCTCCACCAGTGCTTTTAGGATGAGATTG
.............................................................................................................................................((.((((..((((((.....))))))))))))..((((.....((((((((.((((.....((((((((.(((.((((((.....)).)))).))).)))............))))).....))))...))))))))..)))).......................................................
..........................................................................................................................................139...................................................................................................................................................289................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR343336SRR040034(GSM532919)
G001N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR040038(GSM532923)
G531N. (cervix)
SRR029130(GSM416759)
DLD2. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR343337SRR029128(GSM416757)
H520. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................................................................................................................................TGCTACATAAACTGTAAAA............................ 191.000.00-----------------------------------------1.00-------
.....................................................................................................................................................................................................................................ATTTGTAGTGAAAGAAAAAG.......................................................................................... 201.000.00------------------------1.00------------------------
........................................................................................................................................................................................CATCCACTGTATTGTAAC......................................................................................................................................... 181.000.00---------------------------1.00---------------------
..................................................................................................TGTAGCTCAGCTGGGCC................................................................................................................................................................................................................................ 171.000.00----------------------1.00--------------------------
...............................................................................................................................................................TTTCTTCACTCTCCTTATA................................................................................................................................................................. 191.000.00-------------------------------1.00-----------------
..............................................................................................................................CTACTGCAGCCATGTAATT.................................................................................................................................................................................................. 191.000.00-------------------------------------------1.00-----
.........................................................................................................CAGCTGGGGCTCAGGGAG........................................................................................................................................................................................................................ 181.000.00--------------------------------------1.00----------
...........................................................................................................................................................................................................................................AGTGAAAGAAATATGTTTG..................................................................................... 191.000.00--------------------------------------------1.00----
.....................................................................................................................................................................................................................................ATTTGTAGTGAAAGAAATAAAG........................................................................................ 221.000.00-----------------------1.00-------------------------
......................................................................................................................................TCAGCCTCTTCCACATGGC.......................................................................................................................................................................................... 1920.500.50----------------------0.50--------------------------