ID: uc010tye.1_intron_6_0_chr14_104136621_f.5p
GENE: KLC1(7)
chr14:104136571-104136820+


(2)
B-CELL
(3)
BRAIN
(6)
BREAST
(14)
CELL-LINE
(1)
CERVIX
(3)
HEART
(1)
HELA
(3)
LIVER
(3)
OTHER
(1)
RRP40.ip
(11)
SKIN
(1)
TESTES

Sense strand
ACAAAGAAGCAGAGCCGTTGTGTAAAAGAGCTCTGGAAATCCGAGAAAAGGTACAAAAGAAGGGGGCAGTCGTTTTCTTTGAGATTTTTGTTTTGTGTGTGTGTGGTTTTTTTTTTTTTTTTGAGATGGAGTCTCGTTCTGTCACCGGGCTGGAGTGCGGTGGCGTGATCTCGGCTCACTGCAACCCCCACCTCCATGGTTCAGGTGATTCTTCTGCCTCGGCCTTCCAAGTAGCTGGGACTACAGGGAC
......................................................................................................((((......((((......))))..(((((....((((((((((.((....)).)))))))).))....)))))..........))))...........................................................
..................................................................................................99..........................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM956925PAZD5TAX577579(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532930(GSM532930)
G702T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
................GTTGTGTAAAAGAGCTCTGGA.....................................................................................................................................................................................................................2118.008.00--8.00-------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCCAGG.........................................................264.000.004.00---------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCTCCC.........................................................263.000.003.00---------------------------------------------------
.......................................................................................................TGGTTTTTTTTTTTTTTTTGGCTC...........................................................................................................................243.000.002.001.00--------------------------------------------------
..............................................AAAGGTACAAAAGAACCAT.........................................................................................................................................................................................193.000.00-----2.00-----------------------1.00----------------------
..AAAGAAGCAGAGCCGTTGTGT...................................................................................................................................................................................................................................2113.003.00-------1.00-2.00------------------------------------------
..............................................AAAGGTACAAAAGAACCA..........................................................................................................................................................................................183.000.00-----3.00----------------------------------------------
...................................................................................................TGTGTGGTTTTTTTTTTTTTTCAGC..............................................................................................................................252.000.002.00---------------------------------------------------
..........................................................................................................................................................................TCGGCTCACTGCAACCCCCACCTCTGGG....................................................282.000.002.00---------------------------------------------------
.................TTGTGTAAAAGAGCTCTGGAAATCCGA..............................................................................................................................................................................................................2712.002.00------------2.00---------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTAACC..................................................................................................................................252.000.002.00---------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCC...............................................................2002.002.00--------1.00------------------------------1.00------------
......................TAAAAGAGCTCTGGAAATC.................................................................................................................................................................................................................1912.002.00---2.00------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCTGGG.........................................................262.000.00-2.00--------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCACCTCCTGCG...................................................322.000.001.001.00--------------------------------------------------
.......................AAAAGAGCTCTGGAAATCCGAGAAAAGGTT.....................................................................................................................................................................................................302.000.00------------------2.00---------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTTTTTTTCGG...............................................................................................................................262.000.002.00---------------------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTTTCCC.................................................................................................................................262.000.002.00---------------------------------------------------
......................TAAAAGAGCTCTGGAAATCCG...............................................................................................................................................................................................................2112.002.00---2.00------------------------------------------------
.......................................................................................................TGGTTTTTTTTTTTTTTTTGGCCC...........................................................................................................................242.000.002.00---------------------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTTTTTCGG...............................................................................................................................282.000.002.00---------------------------------------------------
..............................................................................................................................................................................CTCACTGCAACCCCCACCCCAG......................................................2202.001.00-2.00--------------------------------------------------
..........AGAGCCGTTGTGTAAAAGAG............................................................................................................................................................................................................................2012.002.00---------------------2.00------------------------------
.............................................................................................TGTGTGTGTGTGGTTTTTTTTTTTAACC.................................................................................................................................282.000.001.001.00--------------------------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTTTTTCTGG................................................................................................................................252.000.002.00---------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCGGCT..........................................................252.000.001.001.00--------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCAGG..........................................................252.000.002.00---------------------------------------------------
............AGCCGTTGTGTAAAAGAGCTCTGGAAATCCGAG.............................................................................................................................................................................................................3311.001.00---1.00------------------------------------------------
.........................................................................................................................................................................CTCGGCTCACTGCAACCCCCAAGAA........................................................251.000.00---------------------------------------------1.00------
.......................................................................................................TGGTTTTTTTTTTTTTTTTGGGG............................................................................................................................231.000.001.00---------------------------------------------------
.............................................................................................................................................................................GCTCACTGCAACCCCCACCTCCAGGC...................................................261.000.001.00---------------------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTTCTTG.................................................................................................................................261.000.00--------------------1.00-------------------------------
................GTTGTGTAAAAGAGCTCTGGAAATC.................................................................................................................................................................................................................2511.001.00---1.00------------------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTTTCTCC................................................................................................................................271.000.00-1.00--------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCGACC..........................................................251.000.00-1.00--------------------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTTTTTTTCCCA............................................................................................................................311.000.00-1.00--------------------------------------------------
.....................................................................................................................................................CTGGAGTGCGGTGGCGTGATCTCGGCTCAATG.....................................................................321.000.00----------1.00-----------------------------------------
...........................GAGCTCTGGAAATCCGAGAAAAGGTTT....................................................................................................................................................................................................2711.001.00-----------------------------------------1.00----------
.......................AAAAGAGCTCTGGAAATCCGAGAAAAGG.......................................................................................................................................................................................................2811.001.00------------------------------------------------1.00---
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCACCTCCAGGC...................................................321.000.00-1.00--------------------------------------------------
..........................................................................................................................................................................TCGGCTCACTGCAACCCCCAGCTC........................................................241.000.001.00---------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCACT...........................................................241.000.001.00---------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCGCCC..........................................................241.000.001.00---------------------------------------------------
....................................................................................................GTGTGGTTTTTTTTTTTTTTCGG...............................................................................................................................231.000.001.00---------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCCACCCCGG......................................................281.000.001.00---------------------------------------------------
.....................................................................................................TGTGGTTTTTTTTTTTTTTTTGTT.............................................................................................................................241.000.00-1.00--------------------------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTTTTTTCTG................................................................................................................................251.000.00-1.00--------------------------------------------------
...........................................................................................................................................TGTCACCGGGCTGGAGTGTAA..........................................................................................211.000.00-------1.00--------------------------------------------
.............................................................................................TGTGTGTGTGTGGTTTTTTTTTTTTTTTAATG.............................................................................................................................321.000.00----------1.00-----------------------------------------
.............................................................................................TGTGTGTGTGTGGTTTTTTTTTTCAA...................................................................................................................................261.000.00-1.00--------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCGA.............................................................211.000.001.00---------------------------------------------------
...AAGAAGCAGAGCCGTTG......................................................................................................................................................................................................................................1711.001.00--------------------------------1.00-------------------
.....................................................................................................TGTGGTTTTTTTTTTTTTTTTGGCC............................................................................................................................251.000.001.00---------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCCACCCCAG......................................................281.000.001.00---------------------------------------------------
...............................................................................................................................................................................TCACTGCAACCCCCACCCGGG......................................................211.000.001.00---------------------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTTTTTCTGG..............................................................................................................................291.000.00-1.00--------------------------------------------------
.....................................................................................................................................................................................................................................AGTAGCTGGGACTACAGGGAACCG241.000.00-1.00--------------------------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTTTTTCGGA................................................................................................................................251.000.001.00---------------------------------------------------
.........................................................................................................................................................................CTCGGCTCACTGCAACCCCCAAG..........................................................231.000.00--------------1.00-------------------------------------
...............................................................................................................................................ACCGGGCTGGAGTGCGGTGGCGCG...................................................................................241.000.00-1.00--------------------------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTTTTTTTTTGCTTC...........................................................................................................................301.000.00-1.00--------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCGGG............................................................2301.002.001.00---------------------------------------------------
...................................................................................................................................................................................................................................CAAGTAGCTGGGACTACCG....191.000.00------1.00---------------------------------------------
...................................................................................................TGTGTGGTTTTTTTTTTTTTTTTGGA.............................................................................................................................261.000.001.00---------------------------------------------------
..........................................................................................................................................................................TCGGCTCACTGCAACCCCCACCTCCTGGT...................................................291.000.00-1.00--------------------------------------------------
..........................................................................................................................................................................TCGGCTCACTGCAACCCCCACCTCCTCGG...................................................291.000.00-1.00--------------------------------------------------
......................TAAAAGAGCTCTGGAAATCCGA..............................................................................................................................................................................................................2211.001.00-------------1.00--------------------------------------
....................TGTAAAAGAGCTCTGGAAATCCGAG.............................................................................................................................................................................................................2511.001.00-----------------------1.00----------------------------
..........................................................................................................................................................................TCGGCTCACTGCAACCCCCTGTG.........................................................231.000.00-1.00--------------------------------------------------
.........CAGAGCCGTTGTGTAGGG...............................................................................................................................................................................................................................181.000.00-------------------------------------1.00--------------
.......................................................................................................TGGTTTTTTTTTTTTTTTTGGGCC...........................................................................................................................241.000.001.00---------------------------------------------------
.............................................................................................TGTGTGTGTGTGGTTTTTTTTTTCA....................................................................................................................................251.000.001.00---------------------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTTTCTGG................................................................................................................................271.000.001.00---------------------------------------------------
......................TAAAAGAGCTCTGGAAATCCGAG.............................................................................................................................................................................................................2311.001.00----------------------1.00-----------------------------
.................................................................................................................................................CGGGCTGGAGTGCGGTGGCACGT..................................................................................231.000.00-----------1.00----------------------------------------
......................................................................................................................................................................................................................TGCCTCGGCCTTCCAAGTAGCTGCGA..........261.000.001.00---------------------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTTTTGGA................................................................................................................................271.000.001.00---------------------------------------------------
.....................................................................................................TGTGGTTTTTTTTTTTTTTTTGTATG...........................................................................................................................261.000.001.00---------------------------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTTAAGG...................................................................................................................................221.000.00-1.00--------------------------------------------------
...............................................................................................................................................ACCGGGCTGGAGTGCGGTGGCA.....................................................................................221.000.00----------------------------------------------1.00-----
...................GTGTAAAAGAGCTCTGGAAATCCGAGAAAAGGT......................................................................................................................................................................................................3311.001.00---1.00------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCCATTAG........................................................261.000.00--------------------1.00-------------------------------
..........................................................................................................................................................................TCGGCTCACTGCAACCCCCACCTCCTGC....................................................281.000.00-1.00--------------------------------------------------
..............CCGTTGTGTAAAAGAGCTCTGGAA....................................................................................................................................................................................................................2411.001.00----------------1.00-----------------------------------
.............................................................................................TGTGTGTGTGTGGTTTTTTTTTCCC....................................................................................................................................251.000.001.00---------------------------------------------------
..............................................................................................................................................................................CTCACTGCAACCCCCACC..........................................................1801.001.00-------------1.00--------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCCACCTCCACCT...................................................311.000.00-1.00--------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCGGCT...........................................................2401.002.001.00---------------------------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTCG......................................................................................................................................191.000.00-1.00--------------------------------------------------
.................................TGGAAATCCGAGAAAAG........................................................................................................................................................................................................1711.001.00-------------------------------------------------1.00--
......................................................................................................................................................................................................................................GTAGCTGGGACTACAGGG..1801.001.00--------1.00-------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCACCGC........................................................271.000.00-1.00--------------------------------------------------
......................................................................................................................................................TGGAGTGCGGTGGCGTGATCGCAA............................................................................241.000.001.00---------------------------------------------------
....................TGTAAAAGAGCTCTGGAAATCCGAGAAAAGG.......................................................................................................................................................................................................3111.001.00---------------------------1.00------------------------
.....................................................................................................TGTGGTTTTTTTTTTTTTTCGA...............................................................................................................................221.000.001.00---------------------------------------------------
...................................................................................................TGTGTGGTTTTTTTTTTTTTCTGG...............................................................................................................................241.000.00-1.00--------------------------------------------------
........GCAGAGCCGTTGTGTAAAAG..............................................................................................................................................................................................................................2011.001.00--------------------------1.00-------------------------
........................................................................................................................................................................................................................................AGCTGGGACTACAGGGACGCC211.000.001.00---------------------------------------------------
....................................................................................................GTGTGGTTTTTTTTTTTTTTTTGGCCC...........................................................................................................................271.000.00-1.00--------------------------------------------------
.............................................................................................TGTGTGTGTGTGGTTTTTTTTTTAACC..................................................................................................................................271.000.001.00---------------------------------------------------
.........................AAGAGCTCTGGAAATCCGAGAAAAG........................................................................................................................................................................................................2511.001.00-------1.00--------------------------------------------
.................................................................................................................................................CGGGCTGGAGTGCGGGGG.......................................................................................181.000.00-------------------1.00--------------------------------
.........................AAGAGCTCTGGAAATCCGAGAAAAGG.......................................................................................................................................................................................................2611.001.00-----------------------------------------------1.00----
.................................................................................................TGTGTGTGGTTTTTTTTTTTTTCTC................................................................................................................................251.000.00-1.00--------------------------------------------------
...........................GAGCTCTGGAAATCCGAGAAAAGGT......................................................................................................................................................................................................2511.001.00-------------------------1.00--------------------------
...........................................................................................................................................................TGCGGTGGCGTGATCTCGGCTCAA.......................................................................241.000.00--------------------------------------1.00-------------
.........................................................................................................................................................AGTGCGGTGGCGTGATCTCTGA...........................................................................221.000.00-------------------------------1.00--------------------
.....................................................................................................................................................................................................................................AGTAGCTGGGACTACAGGGAGGAG241.000.001.00---------------------------------------------------
...................................................................................................TGTGTGGTTTTTTTTTTTTTTTTCGC.............................................................................................................................261.000.00-1.00--------------------------------------------------
.......................................................................................................TGGTTTTTTTTTTTTTTTTGAGGA...........................................................................................................................241.000.001.00---------------------------------------------------
..........................................................................................................................................................................................................AGGTGATTCTTCTGCCTCAGCC..........................221.000.00---------------1.00------------------------------------
..........................................................................................................................................................................................................AGGTGATTCTTCTGCCTCGGCCCCC.......................251.000.001.00---------------------------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTGAGT....................................................................................................................................211.000.00-1.00--------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCACCTCCAAGG...................................................321.000.001.00---------------------------------------------------
................................................................................................................................................................TGGCGTGATCTCGGCTCAATGC....................................................................221.000.00---------------1.00------------------------------------
..AAAGAAGCAGAGCCGTT.......................................................................................................................................................................................................................................1711.001.00-------------------------------------------1.00--------
.......................................................................................................................................................................................................................................TAGCTGGGACTACAGGGACACT221.000.00-1.00--------------------------------------------------
................................................................................................................................................................TGGCGTGATCTCGGCTCACTGCAACCCA..............................................................281.000.001.00---------------------------------------------------
.............................................................................................TGTGTGTGTGTGGTTTTTTTTTTTAAC..................................................................................................................................271.000.00-1.00--------------------------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTTTTCTTA.................................................................................................................................241.000.00-1.00--------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCATC...........................................................231.000.001.00---------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCCACCTCCTGGT...................................................311.000.001.00---------------------------------------------------
........................AAAGAGCTCTGGAAATCCGA..............................................................................................................................................................................................................2011.001.00----------------------------------------1.00-----------
..............CCGTTGTGTAAAAGAG............................................................................................................................................................................................................................1611.001.00----------------------------1.00-----------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCCACCCTGG......................................................281.000.001.00---------------------------------------------------
....................................................................................................................................................................................................................................AAGTAGCTGGGACTACAGGGACAGCG261.000.00-1.00--------------------------------------------------
.....................................................................................................TGTGGTTTTTTTTTTTTTTTAACC.............................................................................................................................241.000.001.00---------------------------------------------------
..................................................................................GATTTTTGTTTTGTGACTC.....................................................................................................................................................191.000.00------------------------------------------1.00---------
.............................................................................................................................................TCACCGGGCTGGAGTGCGGCGC.......................................................................................221.000.001.00---------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCACCTCCTGGT...................................................321.000.001.00---------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCACCCCTG......................................................291.000.001.00---------------------------------------------------
.....................................................................................................TGTGGTTTTTTTTTTTTTTTACGG.............................................................................................................................241.000.00-1.00--------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCACCG..........................................................241.000.00-1.00--------------------------------------------------
...............................................................................................TGTGTGTGTGGTTTTTTTTTTTTTCTG................................................................................................................................271.000.00-1.00--------------------------------------------------
..............................................AAAGGTACAAAAGAAGGGGGCAGTCGTTTT..............................................................................................................................................................................3011.001.00------------------------1.00---------------------------
..........................................................................................................................................................................TCGGCTCACTGCAACCCCAGG...........................................................211.000.00-1.00--------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCCACCTCTGG.....................................................301.000.001.00---------------------------------------------------
...................................................................................................TGTGTGGTTTTTTTTTTTTTTTTGTCT............................................................................................................................271.000.001.00---------------------------------------------------
.....................................................................................................TGTGGTTTTTTTTTTTTTTTTGCAGG...........................................................................................................................261.000.001.00---------------------------------------------------
.......................................................................................................TGGTTTTTTTTTTTTTTTTGGTAC...........................................................................................................................241.000.00-1.00--------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCCTCCC.........................................................251.000.00-1.00--------------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGGGG.......................................................................................191.000.00-------------------1.00--------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCAGGG..........................................................251.000.001.00---------------------------------------------------
.......................................................................................................TGGTTTTTTTTTTTTTTTTGCGC............................................................................................................................231.000.00-1.00--------------------------------------------------
.................................................................................................................................................................................................................TCTTCTGCCTCGGCCTTCCAAGTAGCCGGG...........301.000.001.00---------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCCCCCC.........................................................251.000.001.00---------------------------------------------------
........................................................................................................................................................................TCTCGGCTCACTGCAACCCCCAAGAG........................................................261.000.001.00---------------------------------------------------
.......................................................................................................................................................................ATCTCGGCTCACTGCAACCCCGCCC..........................................................251.000.00-1.00--------------------------------------------------
...................................................................................................TGTGTGGTTTTTTTTTTTCGG..................................................................................................................................211.000.001.00---------------------------------------------------
..................................................................................................................................................................................CTGCAACCCCCACCTCATGA....................................................201.000.00----1.00-----------------------------------------------
........................................................................................................GGTTTTTTTTTTTTTTTTGTGCA...........................................................................................................................231.000.001.00---------------------------------------------------
.....................................................................................................TGTGGTTTTTTTTTTTTTTTGCC..............................................................................................................................231.000.001.00---------------------------------------------------
........................AAAGAGCTCTGGAAATC.................................................................................................................................................................................................................1720.500.50---0.50------------------------------------------------
...................GTGTAAAAGAGCTCTGG......................................................................................................................................................................................................................1720.500.50---0.50------------------------------------------------
.....................GTAAAAGAGCTCTGG......................................................................................................................................................................................................................1580.380.38---0.25------------------0.12-----------------------------
...........................................................................................................................................................................................................GGTGATTCTTCTGCCTCGGC...........................2030.330.33--------------------------------------------------0.33-
.....................GTAAAAGAGCTCTGGA.....................................................................................................................................................................................................................1660.170.17---------------------------------------------------0.17
.................................................................................................................................................CGGGCTGGAGTGCGGTGGCGTGATCTC..............................................................................2760.170.17-------0.17--------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTGGCGTGAT.................................................................................2580.120.12-----------0.12----------------------------------------

Antisense strand
ACAAAGAAGCAGAGCCGTTGTGTAAAAGAGCTCTGGAAATCCGAGAAAAGGTACAAAAGAAGGGGGCAGTCGTTTTCTTTGAGATTTTTGTTTTGTGTGTGTGTGGTTTTTTTTTTTTTTTTGAGATGGAGTCTCGTTCTGTCACCGGGCTGGAGTGCGGTGGCGTGATCTCGGCTCACTGCAACCCCCACCTCCATGGTTCAGGTGATTCTTCTGCCTCGGCCTTCCAAGTAGCTGGGACTACAGGGAC
......................................................................................................((((......((((......))))..(((((....((((((((((.((....)).)))))))).))....)))))..........))))...........................................................
..................................................................................................99..........................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM956925PAZD5TAX577579(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532930(GSM532930)
G702T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
......................................................................................TTTGTTTTGTGTGTGTGTTCCG.............................................................................................................................................. 223.000.00----3.00-----------------------------------------------
...........................................AGAAAAGGTACAAAATTTG............................................................................................................................................................................................ 192.000.00----2.00-----------------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTGGGT................................................................................ 232.000.002.00---------------------------------------------------
......................................................................................................................TTTTGAGATGGAGTCTCGTTCA.............................................................................................................. 222.000.00------2.00---------------------------------------------
..................................................................................................................................................................GCGTGATCTCGGCTCACTGCAACGACC............................................................. 272.000.002.00---------------------------------------------------
.........................................................................................................................................TCTGTCACCGGGCTGGAGTGCGGTGC....................................................................................... 262.000.002.00---------------------------------------------------
.....................................................................................................................................................ACGCCACCGCACTCCAG.................................................................................... 1702.002.00------1.00---------------------------1.00-----------------
...............................................................................................................................................................GTGGCGTGATCTCGGCTCACTGCAACCG............................................................... 281.000.001.00---------------------------------------------------
............................................................................................................................................................GCGGTGGCGTGATCTGCA............................................................................ 181.000.00-----------1.00----------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTGATGGTG............................................................................. 261.000.001.00---------------------------------------------------
.........................................................................................GTTTTGTGTGTGTGTGGCACC............................................................................................................................................ 211.000.00-----------------1.00----------------------------------
....................................................................................................................TTTTTTGAGATGGAGTCTCGTTCTGCAAG......................................................................................................... 291.000.00----------1.00-----------------------------------------
......................................................................................................................................................................................................................TGCCTCGGCCTTCCAAGTAGCTGGGACTT....... 291.000.00-1.00--------------------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTGATAGGA............................................................................. 261.000.001.00---------------------------------------------------
..................................................................................................................................................GGGCTGGAGTGCGGTGGCGTGATCTGC............................................................................. 271.000.00-1.00--------------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTGGCGTGGG................................................................................. 251.000.001.00---------------------------------------------------
................................................................GGCAGTCGTTTTCTTTGA........................................................................................................................................................................ 181.000.00-----------------------------------1.00----------------
...............................................................................................................................................................................................................ATTCTTCTGCCTCGGCCTTTGC..................... 221.000.00-1.00--------------------------------------------------
...............................................................................................................................GGAGTCTCGTTCTGTTGGA........................................................................................................ 191.000.00---------------------------------1.00------------------
..........................................................................................................................................................GTGCGGTGGCGTGATACTG............................................................................. 191.000.00----1.00-----------------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTGATCTCGGCTGGGC...................................................................... 331.000.001.00---------------------------------------------------
............................................................................................................................................................................................................GTGATTCTTCTGCCTCGGCCTTTCG..................... 251.000.00-1.00--------------------------------------------------
...............................................................................................................................GTGACAGAACGAGACTCC......................................................................................................... 1801.001.00--------1.00-------------------------------------------
..................................................................................................................................................GGGCTGGAGTGCGGTGGCGTGATC................................................................................ 241.000.001.00---------------------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTGATGGGC............................................................................. 261.000.001.00---------------------------------------------------
.......................................................................................................................................................GGAGTGCGGTGGCGTGATGGGC............................................................................. 221.000.001.00---------------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTCCGT..................................................................................... 211.000.00------------------------------------1.00---------------
...........................................................................................................................................................TGCGGTGGCGTGATCTCGGCTCACTGCAAGC................................................................ 311.000.001.00---------------------------------------------------
...............................................................................................................................................................................................................ATTCTTCTGCCTCGGCCTTCCTGCT.................. 251.000.00--1.00-------------------------------------------------
...............................................................................................................................................................................................CTCCATGGTTCAGGTAT.......................................... 171.000.00--------------1.00-------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTGGCGTAG.................................................................................. 241.000.001.00---------------------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTGATGGA.............................................................................. 251.000.001.00---------------------------------------------------
..................................................................................................................................................GGGCTGGAGTGCGGTGGCGTGATTG............................................................................... 251.000.00-1.00--------------------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTGATAGGC............................................................................. 261.000.001.00---------------------------------------------------
....................................................................................................GTGTGGTTTTTTTTTTTTCCTT................................................................................................................................ 221.000.00-----------------1.00----------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTGGGC................................................................................ 231.000.001.00---------------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTGGCGTGCC................................................................................. 251.000.001.00---------------------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGGGGC................................................................................. 221.000.001.00---------------------------------------------------
.................................................................................................TGTGTGTGGTTTTTTTTTTTTTAACA............................................................................................................................... 261.000.00------------------------------1.00---------------------
......................................................................................TTTGTTTTGTGTGTGTCAG................................................................................................................................................. 191.000.00----1.00-----------------------------------------------
.....................................................................................................................................................................................................................CTGCCTCGGCCTTCCAAGTGGAG.............. 231.000.00-1.00--------------------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTAGGC................................................................................ 231.000.001.00---------------------------------------------------
.......................................................................................................................................................................................................................GCCTCGGCCTTCCAAGTT................. 181.000.00---------1.00------------------------------------------
..................................................................................................................................................GGGCTGGAGTGCGGTGGCGTCG.................................................................................. 221.000.00--------------------------------------------1.00-------
.............................................................................................................................................................................................................................TCCCAGCTACTTGGAAGGC.......... 1901.001.00----------------1.00-----------------------------------
...............................................................................................................................................ACCGGGCTGGAGTGCGGTGGCGTC................................................................................... 241.000.001.00---------------------------------------------------
.................................................................................................................................................CGGGCTGGAGTGCGGTGGCGTGAA................................................................................. 241.000.001.00---------------------------------------------------
...................................................................................................................................................GGCTGGAGTGCGGTGGCGTGAGAG............................................................................... 241.000.00-1.00--------------------------------------------------
.........................................................................................................................................................................................................GCCGAGGCAGAAGAATCACCTG........................... 2230.330.33-0.33--------------------------------------------------
.....................................................................................................................................................................................................................TAGTCCCAGCTACTTGGAAGGCCGAGGCAG....... 3050.200.200.20---------------------------------------------------
.................................................................................................................................................AGATCACGCCACCGCACTCCAGCCCG............................................................................... 2660.170.17-0.17--------------------------------------------------
................................................................................................................................................AGATCACGCCACCGCACTCCAGCCCGG............................................................................... 2760.170.170.17---------------------------------------------------
................................................................................................................................................TCACGCCACCGCACTCCAGCCCGG.................................................................................. 2480.120.120.12---------------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTGGCGTGATC................................................................................ 2680.120.000.12---------------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTGGCGTGATGCAG............................................................................. 2980.120.000.12---------------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTGGCGTGATGGC.............................................................................. 2880.120.000.12---------------------------------------------------
................................................................................................................................................ATCACGCCACCGCACTCCAGCCCGG................................................................................. 2580.120.120.12---------------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTGGCGTGATGG............................................................................... 2780.120.000.12---------------------------------------------------
................................................................................................................................................CCGGGCTGGAGTGCGGTGGCGTGAACG............................................................................... 270.120.000.12---------------------------------------------------