ID: uc010txa.1_intron_4_0_chr14_101013000_r.5p
GENE: (1)
chr14:101034048-101034297-


(1)
AGO2.ip 		(1)
BRAIN 		(4)
BREAST 		(9)
CELL-LINE 		(7)
CERVIX 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(8)
SKIN 		(1)
XRN.ip

Sense strand
CTCTCGTTTGGTTTCTCGCAGGCCTCTGCCGCAGACATGGAGAAACTCAGGTGAGTGGAGCGTCTCCCGTGCCGCGGCTCGCGGGGGCCGGGTCGGGGGTGAGGGCGCTGGGGAAGGCGGGGGAAGGGGGCTCCACCCGAGCGCATCCCCCAGGGCCCGCGGGCGGCCTCGGCGGGGCTGCGGGCCAGGTGCGTGTGTGTGGTGCGTGTGTGCGCGCCGCGAGGCGCTGGGGAGCCTCGCGCGGGGCTCC
...................................................................................................((.((((.((((((...(((.(((...((....)).)))...)))...)))))).)))).)).........................................................................................
.................................................................................................98................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR343335SRR343334SRR189786SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343336SRR189787SRR343337SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532880(GSM532880)
G659T. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR040007(GSM532892)
G601T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
.............................................................................................................................................CGCATCCCCCAGGGCATTG..........................................................................................191942.000.001495.00258.0087.0060.0019.005.00-7.003.003.00---2.00---2.00------------------1.00-------
.............................................................................................................................................CGCATCCCCCAGGGCATTA..........................................................................................1937.000.0029.008.00------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCACTG..........................................................................................1935.000.0033.001.00---1.00--------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCAGTG..........................................................................................1921.000.0019.002.00------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCATCG..........................................................................................1921.000.0020.001.00------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCCTTG..........................................................................................1911.000.0010.001.00------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCATTT..........................................................................................1910.000.007.003.00------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCAATG..........................................................................................199.000.008.00-------1.00-----------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCATT...........................................................................................188.000.007.00-------1.00-----------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCATGG..........................................................................................198.000.008.00-------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCA.............................................................................................166.000.002.00--4.00----------------------------------------
...............................CAGACATGGAGAAACTCAG........................................................................................................................................................................................................1916.006.00------4.00---1.001.00--------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCATAG..........................................................................................196.000.005.001.00------------------------------------------
................................AGACATGGAGAAACTCAG........................................................................................................................................................................................................1824.004.00----------0.50---1.00---1.50-------1.00-----------------
................................AGACATGGAGAAACTCAGG.......................................................................................................................................................................................................1913.003.00------3.00-------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCCTGG..........................................................................................192.000.002.00-------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCATTC..........................................................................................192.000.001.001.00------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCGTTG..........................................................................................192.000.002.00-------------------------------------------
...................................................................................................................................................................................................................GCGCGCCGCGAGGCGTCCA....................192.000.00---------------2.00----------------------------
.............................................................................................................................................CGCATCCCCCAGGGCAGGG..........................................................................................192.000.002.00-------------------------------------------
...........................................................................................................................................AGCGCATCCCCCAGGGCATTG..........................................................................................212.000.00---2.00----------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCAGCG..........................................................................................192.000.002.00-------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCAT............................................................................................172.000.00--1.001.00----------------------------------------
...................................CATGGAGAAACTCAGGTGAGTGGAGCG............................................................................................................................................................................................2711.001.00------1.00-------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCGTGG..........................................................................................191.000.00-----1.00--------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCAACG..........................................................................................191.000.00-----1.00--------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCACTT..........................................................................................191.000.00-1.00------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCGGCC..........................................................................................191.000.001.00-------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCCATG..........................................................................................191.000.001.00-------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCACAG..........................................................................................191.000.001.00-------------------------------------------
.........................CTGCCGCAGACATGGAGAAACTCAG........................................................................................................................................................................................................2511.001.00------------1.00-------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCCTTA..........................................................................................191.000.001.00-------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCGCTG..........................................................................................191.000.001.00-------------------------------------------
......................................................................................................GGGCGCTGGGGAAGGCGGA.................................................................................................................................191.000.00----------------------------1.00---------------
................................................................................................................................................ATCCCCCAGGGCCCGGCT........................................................................................181.000.00--------------------------------------1.00-----
.........................................................................................................................................................................CGGCGGGGCTGCGGGCCGGT.............................................................201.000.00---------------------1.00----------------------
.............................................................................................................................................CGCATCCCCCAGGGCCCTG..........................................................................................191.000.001.00-------------------------------------------
...................................CATGGAGAAACTCAGGTGAGTGGAGC.............................................................................................................................................................................................2611.001.00------1.00-------------------------------------
........................TCTGCCGCAGACATGGAGAAACTCAG........................................................................................................................................................................................................2611.001.00------------1.00-------------------------------
.......................................................................................................................GGGGAAGGGGGCTCCGGGG................................................................................................................191.000.00-------------------1.00------------------------
................................AGACATGGAGAAACTCAGGT......................................................................................................................................................................................................2011.001.00------1.00-------------------------------------
................................................................................................................GAAGGCGGGGGAAGGGGGA.......................................................................................................................191.000.00----------------------1.00---------------------
.......................................................................................................................................CCCGAGCGCATCCCCCAGGGCCC............................................................................................2311.001.00-----------1.00--------------------------------
...................................................................................................................................................CCCCAGGGCCCGCGGGA......................................................................................171.000.00-------------------------------------1.00------
.......................................................................................................................................................................CTCGGCGGGGCTGCGGGAA................................................................191.000.00-------------------------1.00------------------
....................................................................................................................................................................GGCCTCGGCGGGGCTGCCG...................................................................191.000.00-------------------------------1.00------------
.............................................................................................................................................CGCATCCCCCAGGGCCTCG..........................................................................................191.000.001.00-------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCGCAG..........................................................................................191.000.001.00-------------------------------------------
........................................................................................CGGGTCGGGGGTGAGGTAGT..............................................................................................................................................201.000.00-----------------------------------1.00--------
.............................................................................................................................................CGCATCCCCCAGGGCCTTGG.........................................................................................201.000.00----1.00---------------------------------------
.................GCAGGCCTCTGCCGCAGACATGGAGAAACTCAG........................................................................................................................................................................................................3311.001.00--------------------------------1.00-----------
..................CAGGCCTCTGCCGCAGACATGGAGAAACTCAG........................................................................................................................................................................................................3211.001.00--------------1.00-----------------------------
......................................................................................................GGGCGCTGGGGAAGGCTGGA................................................................................................................................201.000.00----------------------------------1.00---------
.............................................................................................................................................CGCATCCCCCAGGGCATG...........................................................................................181.000.00-1.00------------------------------------------
.............................................................................................................................................CGCATCCCCCAGGGCAAGG..........................................................................................191.000.001.00-------------------------------------------
............................CCGCAGACATGGAGAAACTCAG........................................................................................................................................................................................................2211.001.00----------1.00---------------------------------
...........................................................................GGCTCGCGGGGGCCGGGG.............................................................................................................................................................181.000.00---------------------------1.00----------------
..................................................................................................................................................................................................................TGCGCGCCGCGAGGC.........................1520.500.50----------------------------------------0.50---
..................................................................................................................................................................GCGGCCTCGGCGGGGC........................................................................1650.200.20-----------0.20--------------------------------
..................................................................................................................AGGCGGGGGAAGGGGGC.......................................................................................................................1750.200.20-----------------------------------------0.20--
............................................................................................................TGGGGAAGGCGGGGGA..............................................................................................................................1670.140.14------------------------------------------0.14-
.............................................................................................................GGGGAAGGCGGGGGAA.............................................................................................................................1680.120.12-------------------------------------------0.12

Antisense strand
CTCTCGTTTGGTTTCTCGCAGGCCTCTGCCGCAGACATGGAGAAACTCAGGTGAGTGGAGCGTCTCCCGTGCCGCGGCTCGCGGGGGCCGGGTCGGGGGTGAGGGCGCTGGGGAAGGCGGGGGAAGGGGGCTCCACCCGAGCGCATCCCCCAGGGCCCGCGGGCGGCCTCGGCGGGGCTGCGGGCCAGGTGCGTGTGTGTGGTGCGTGTGTGCGCGCCGCGAGGCGCTGGGGAGCCTCGCGCGGGGCTCC
...................................................................................................((.((((.((((((...(((.(((...((....)).)))...)))...)))))).)))).)).........................................................................................
.................................................................................................98................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR343335SRR343334SRR189786SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343336SRR189787SRR343337SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532880(GSM532880)
G659T. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR040007(GSM532892)
G601T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
..........................................................................................................................................................................................AGGTGCGTGTGTGTGTATG............................................. 196.000.003.003.00------------------------------------------
...................................................................................................................GGCGGGGGAAGGGGGGCC..................................................................................................................... 182.000.00--------------------1.00--------1.00--------------
...................................................................................................................GGCGGGGGAAGGGGGGCCC.................................................................................................................... 191.000.00---------------------------------1.00----------
......................................................................................................................................ACCCGAGCGCATCCCCAGTT................................................................................................ 201.000.00-----1.00--------------------------------------
..............................................................................................................................GCTCGGGTGGAGCCCC............................................................................................................ 1611.001.00-----------------------1.00--------------------
..........................................................CCGCGGCACGGGAGACGCT............................................................................................................................................................................. 1911.001.00------------------------1.00-------------------
...............................................................................................................................................................................................................GTGTGCGCGCCGCGACATT........................ 191.000.00-----1.00--------------------------------------
..............................................................................................................................................................................................................TCGCGGCGCGCACACA............................ 1611.001.001.00-------------------------------------------
.......................................................................................................................................................AGGGCCCGCGGGCGGCTCG................................................................................ 191.000.001.00-------------------------------------------
.......................................................................................................................................................AGGGCCCGCGGGCGGCACG................................................................................ 191.000.001.00-------------------------------------------
.............................................................................................................................................................................................................GTGTGTGCGCGCCGCGATAG......................... 201.000.00-----1.00--------------------------------------
.............................................................................................................................................................................................................GTGTGTGCGCGCCGCGACGGT........................ 211.000.00-----1.00--------------------------------------
...............................................................................CGCGGGGGCCGGGTCGGCGCC...................................................................................................................................................... 211.000.00----------------1.00---------------------------
............TTCTCGCAGGCCTCTGCTCA.......................................................................................................................................................................................................................... 201.000.00------------------------------1.00-------------
...........................................................................................................................................................CCCGCGGGCGGCCTCGAA............................................................................. 181.000.00----------------1.00---------------------------
.............................................................................................................................................................................ACCTGGCCCGCAGCCCC............................................................ 1720.500.50---------------------------------------0.50----