ID: uc010tvw.1_intron_1_0_chr14_88359818_r.3p
GENE: GALC(12)
chr14:88359768-88360017-


(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(9)
CELL-LINE
(1)
LIVER
(1)
OTHER
(1)
SKIN

Sense strand
GTGCGGTCCTGGGATTTAGAAGACTTGGGTTTTAGTCCTGGTTGTGCTTAGCAGTCATATGTCCTTGGGTAAATCACTTAACTTCTCTGAACTTCAGTTTTTCTATCTACAAAATAGGGTCTTCTGTGGGCATACAATGGGCTAGGCTAAGCACTTCATATGTGCTATCTAATTTCTTTCTTTCTTTTTTTTTTTGACAGAGTCTCGCTCTGTCACCCAGGCTGGAATGCATTGGCTCCATCTCAGCTCA
..................................................................(((((((..(((.((.(((...))).)).)))..)).))))).(((((...(((((..((((....))))..)))))......(((((.......))))).........................)))))......................................................
..................................................................67...................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR038858(GSM458541)
MEL202. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTTG.....................................................29109.000.0051.0044.006.008.00-----------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTG........................................................2647.000.0021.0023.001.002.00-----------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTG......................................................28327.3327.3312.3312.671.331.00-----------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTAATG.....................................................268.000.00-2.002.002.00--2.00--------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTCG......................................................258.000.00-1.002.004.00--1.00--------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTCTTG......................................................258.000.003.001.001.003.00-----------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTTCTTG....................................................286.000.002.003.00-1.00-----------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTTTCTTG...................................................294.000.001.00-1.002.00-----------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTCTTG.....................................................274.000.001.001.002.00------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTTTTA...................................................313.000.001.002.00-------------
.........................................................................................................................................................................TAATTTCTTTCTTTCTTTTTTTTTTTTCG....................................................292.000.00--1.001.00-----------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTCTG......................................................282.000.002.00--------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTA.......................................................272.000.001.001.00-------------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTTCTTG...................................................282.000.001.00-1.00------------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTCCTG....................................................272.000.00-2.00-------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTTA.....................................................292.000.001.00-1.00------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTTCT....................................................301.000.001.00--------------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTGCC.....................................................261.000.00-----1.00---------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTTTCCG....................................................281.000.00--1.00------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTTAA....................................................301.000.00-1.00-------------
..............................................................................................................................................................................TCTTTCTTTCTTTTTTTTTTTGACATG.................................................271.000.00----1.00----------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTAG.....................................................291.000.00-1.00-------------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTGGA...........................................................211.000.00----1.00----------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTTCCG....................................................271.000.00--1.00------------
..................................................................................................................................................................................TCTTTCTTTTTTTTTTTGAACG..................................................221.000.001.00--------------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTTTCTTC...................................................291.000.00----1.00----------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTCCTG......................................................261.000.00------1.00--------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTCG..........................................................221.000.00---1.00-----------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTTCCTG....................................................281.000.001.00--------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTCCAG.........................................................251.000.00--1.00------------
..............................................................................................................................................................................TCTTTCTTTCTTTTTTTTTTTGACGG..................................................261.000.00-----1.00---------
........................................................................................................................................................................CTAATTTCTTTCTTTAAG................................................................181.000.00---1.00-----------
....................................................................................................................................................................................TTTCTTTTTTTTTTTGATCAC.................................................211.000.00------1.00--------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTTTAACG...................................................291.000.00--1.00------------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTCCG.......................................................241.000.00---1.00-----------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTCTAG....................................................301.000.00---1.00-----------
.......................................................................................................................................................................TCTAATTTCTTTCTTTCTTTAAG............................................................231.000.00--1.00------------
............................................................................................................................................................................................................TCGCTCTGTCACCCAGGCTGGAACGCG...................271.000.00----1.00----------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTTGCT....................................................271.000.00-----1.00---------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTGTA......................................................251.000.00----1.00----------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTCTCC....................................................271.000.00----1.00----------
.........................................................................................................................................................................TAATTTCTTTCTTTCTTTTTTTTTCG.......................................................261.000.00--1.00------------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTTCAAG...................................................281.000.00--1.00------------
.......................................................................................................................................................................TCTAATTTCTTTCTTTG..................................................................171.000.00--1.00------------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTTTAACT...................................................291.000.00----1.00----------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTTCTAG...................................................281.000.00--1.00------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTCTG.......................................................271.000.00---1.00-----------
......................................................................................................................................................................................TCTTTTTTTTTTTGACAGTGC...............................................211.000.00----1.00----------
....................................................................................................................................................................................................ACAGAGTCTCGCTCTGTCACCCAGGGGAG.........................291.000.00----1.00----------
................................................................................................................................................................................TTTCTTTCTTTTTTTTTTTGACACATG...............................................271.000.00------1.00--------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTTAG....................................................301.000.00-1.00-------------
................................................................................................................................................................................TTTCTTTCTTTTTTTTTTTGACATGGA...............................................271.000.00----1.00----------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTCAG........................................................261.000.00--1.00------------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTATTG.......................................................251.000.00---1.00-----------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTCTCG.......................................................241.000.00---1.00-----------
............................................................................................................................................................................TTTCTTTCTTTCTTTTTTTTTTTGTGTA..................................................281.000.00----1.00----------
.....................................................................................................................................................................................TTCTTTTTTTTTTTGATCT..................................................191.000.001.00--------------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTCTG........................................................231.000.00--1.00------------
....................................................................................................................................................................................................................TCACCCAGGCTGGAATGCATTGGAA.............251.000.00---------1.00-----
.........................................................................................................................................................................TAATTTCTTTCTTTCTTTTTTTTTTTTTCG...................................................301.000.00--1.00------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTCG........................................................261.000.00-1.00-------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTCTG.....................................................291.000.00---1.00-----------
.......................................................................AATCACTTAACTTCTCTGAACTCTG..........................................................................................................................................................251.000.00-------------1.00-
.....................................................................................................................................................................................TTCTTTTTTTTTTTGACAGCTC...............................................221.000.00----1.00----------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTATG.........................................................221.000.001.00--------------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTTTCCCT...................................................291.000.00--1.00------------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTTTCTGG...................................................281.000.00--1.00------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTCG......................................................281.000.00---1.00-----------
..................................................................................................................................................................................TCTTTCTTTTTTTTTTTGACATGG................................................241.000.00----1.00----------
......................................................................................................................................................................................TCTTTTTTTTTTTGACAGCGGC..............................................221.000.00----1.00----------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTTGG....................................................301.000.00-1.00-------------
............................................................................................................................................................................TTTCTTTCTTTCTTTTTTTTTTTGTGC...................................................271.000.00-----1.00---------
.............................................................................................................................................................................TTCTTTCTTTCTTTTTTTTTTTGACGG..................................................271.000.00----1.00----------
...........................................................................................................................................................................ATTTCTTTCTTTCTTTTTTTTTGACG.....................................................261.000.00----1.00----------
.........................................................................................................................................................................TAATTTCTTTCTTTCTTTTTTTTTTTTTGG...................................................301.000.001.00--------------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTG............................................................221.000.00----1.00----------
.......................................................................................................................................................................................................................CCCAGGCTGGAATGCATTGACT.............221.000.00----------1.00----
.................................................................................................................................................................................TTCTTTCTTTTTTTTTTTGATGGC.................................................241.000.00-----1.00---------
.........................................................................................................................................................................................................................CAGGCTGGAATGCATTTAC..............191.000.00-------1.00-------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTCTG........................................................261.000.001.00--------------
..........................................................................................................................................................................AATTTCTTTCTTTCTTTTTTTTTTATTG....................................................281.000.00-1.00-------------
.......................................................................................................................................................................................................................CCCAGGCTGGAATGCATTAGGC.............221.000.00------------1.00--
.........................................................................................................................................................................TAATTTCTTTCTTTCTTTTTTTTTTTG......................................................2770.860.860.140.57-0.14-----------
........................................................................................................................................................................CTAATTTCTTTCTTTCTTTTTTTTTTTGG.....................................................2930.6727.330.330.33-------------
..........................................................................................................................................................................................................................AGGCTGGAATGCATTGGCT.............1940.250.25--------------0.25

Antisense strand
GTGCGGTCCTGGGATTTAGAAGACTTGGGTTTTAGTCCTGGTTGTGCTTAGCAGTCATATGTCCTTGGGTAAATCACTTAACTTCTCTGAACTTCAGTTTTTCTATCTACAAAATAGGGTCTTCTGTGGGCATACAATGGGCTAGGCTAAGCACTTCATATGTGCTATCTAATTTCTTTCTTTCTTTTTTTTTTTGACAGAGTCTCGCTCTGTCACCCAGGCTGGAATGCATTGGCTCCATCTCAGCTCA
..................................................................(((((((..(((.((.(((...))).)).)))..)).))))).(((((...(((((..((((....))))..)))))......(((((.......))))).........................)))))......................................................
..................................................................67...................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR038858(GSM458541)
MEL202. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.........................................................................................................................................................................................................GTCTCGCTCTGTCACCCAGGCTGGAATAGTC.................. 311.000.00----1.00----------
...........................................................................ACTTAACTTCTCTGAATATG........................................................................................................................................................... 201.000.00--------1.00------
....................................................................................................................................................................................................................TCACCCAGGCTGGAATGAAG.................. 201.000.00-----------1.00---
.................................................................................................................................................................................................................CTGTCACCCAGGCTGGAATGCACTAG............... 261.000.00-----1.00---------