ID: uc010tui.1_intron_3_0_chr14_74363164_f.5p
GENE: (4)
chr14:74363114-74363363+


(1)
AGO2.ip
(1)
B-CELL
(1)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(2)
HEART
(2)
HELA
(1)
LIVER
(1)
OTHER
(14)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
ACGAGAGCTCAGACTGTACAGAAATCCCCGGAGTTTTTGTCCACTTCAGAGTCTTCTAGCTTGTTGCAAGATCTACAGCCAAGTGATAGCACTTCTTTTATTCTTCTTAACCTAACAAGAGCAGGTATTCTTTCCTTTTTTTTGGGCTCTGCTTATGCCTAAGAAAAAAATTAGGGGTGGGGCATATTTAACTTAGTCATACTTAAAATAGAAAGAACCTTTATTATTTTATTATTTTGGAGAATTGGTG
..............................................................................................................(((((.(((((.(((........)))))))))))))........................................................................................................
................................................................................................97..................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
..............................................................................................................................ATTCTTTCCTTTTTTGCCA.........................................................................................................1910.000.00---------2.00-2.002.00----1.00--1.00--------1.00-1.00----------
.........................................................................................CACTTCTTTTATTCTTCTTAACCTAACAAG...................................................................................................................................30110.0010.009.00--1.00--------------------------------------
.......................................................................................................................AGCAGGTATTCTTTCATG.................................................................................................................183.000.00--3.00---------------------------------------
.....................................................................................................TCTTCTTAACCTAACAAG...................................................................................................................................1813.003.00--3.00---------------------------------------
..............................................................................................................................ATTCTTTCCTTTTTTTTCTC........................................................................................................203.000.00-3.00----------------------------------------
........................................................................................................................................................................................................................ACCTTTATTATTTTATTTTTG.............213.000.00---3.00--------------------------------------
.CGAGAGCTCAGACTGTACAGAAATCCCCGGAGT........................................................................................................................................................................................................................3312.002.00------2.00-----------------------------------
.............................................................................................................................TATTCTTTCCTTTTTTTTTG.........................................................................................................202.000.00-2.00----------------------------------------
........TCAGACTGTACAGAAATCCCCGGAGTT.......................................................................................................................................................................................................................2712.002.00----2.00-------------------------------------
...........................................................................................................TAACCTAACAAGAGCAG..............................................................................................................................1712.002.00--------2.00---------------------------------
......................................................................................................CTTCTTAACCTAACAAGAGCAG..............................................................................................................................2212.002.00-----------------------1.00-------------1.00----
....................................................................................................TTCTTCTTAACCTAACAAG...................................................................................................................................1912.002.00--2.00---------------------------------------
..............................................................................................................................ATTCTTTCCTTTTTTTTAAG........................................................................................................201.000.00------------------1.00-----------------------
.........CAGACTGTACAGAAATCCCCGGAGT........................................................................................................................................................................................................................2511.001.00---------------------------------1.00--------
.......CTCAGACTGTACAGAAATCC...............................................................................................................................................................................................................................2011.001.00--------------1.00---------------------------
.............................................................................................................................TATTCTTTCCTTTTTTTTGGC........................................................................................................211.000.00-----1.00------------------------------------
.....AGCTCAGACTGTACAGAAATC................................................................................................................................................................................................................................2111.001.00----------------------------------------1.00-
..........................................................................................ACTTCTTTTATTCTTCTTAACCTAACAAG...................................................................................................................................2911.001.00-------1.00----------------------------------
..........................................................................................ACTTCTTTTATTCTTCTTAACCTAATAAG...................................................................................................................................291.000.00-------1.00----------------------------------
..................................................................................................................................TTTCCTTTTTTTTGGAGGT.....................................................................................................191.000.001.00-----------------------------------------
..............................................................................................CTTTTATTCTTCTTAACCTAACAAG...................................................................................................................................2511.001.00----------------------------------1.00-------
..................................................................................................................................TTTCCTTTTTTTTGGTACC.....................................................................................................191.000.00-----1.00------------------------------------
..........................................................................................................................................................................................................................CTTTATTATTTTATTATTTTTAG.........231.000.00-------------1.00----------------------------
.........CAGACTGTACAGAAATCCCC.............................................................................................................................................................................................................................2011.001.00--------------------------1.00---------------
..........................................................................ACAGCCAAGTGATAGCACTTCTTTT.......................................................................................................................................................2511.001.00-----------------------------------1.00------
.CGAGAGCTCAGACTGTACAG.....................................................................................................................................................................................................................................2011.001.00---------------------1.00--------------------
.......CTCAGACTGTACAGAAATCCCCGGAG.........................................................................................................................................................................................................................2611.001.00--------------------------------------1.00---
.........................................................................................CACTTCTTTTATTCTTCTTAACCTAACAAT...................................................................................................................................301.000.001.00-----------------------------------------
....................................................................................................................................................................AAAAAATTAGGGGTGTGT....................................................................181.000.00---------------------------------------1.00--
.........CAGACTGTACAGAAACTGG..............................................................................................................................................................................................................................191.000.00-------------------------1.00----------------
.......CTCAGACTGTACAGAAATCCCCGGAGTTTTTG...................................................................................................................................................................................................................3211.001.00----------1.00-------------------------------
..........................................................................................ACTTCTTTTATTCTTTG...............................................................................................................................................171.000.00-1.00----------------------------------------
..........AGACTGTACAGAAATCCCC.............................................................................................................................................................................................................................1911.001.00----------------------------1.00-------------
.....................................................................................................................................CCTTTTTTTTGGGCTCCGG..................................................................................................191.000.00--------------------------------1.00---------
..............................................................................................................................ATTCTTTCCTTTTTTTCG..........................................................................................................181.000.00-1.00----------------------------------------
................................................................................................................................TCTTTCCTTTTTTTTGCTGT......................................................................................................201.000.00------------------------------1.00-----------
...............................................................................................................................TTCTTTCCTTTTTTTTGTATG......................................................................................................211.000.00-1.00----------------------------------------
..............................................................................................................................ATTCTTTCCTTTTTTTCTTG........................................................................................................201.000.00-------------1.00----------------------------
..GAGAGCTCAGACTGTACAGAAAT.................................................................................................................................................................................................................................2311.001.00-----------------------------------------1.00
..............................................................................................................................................................CTAAGAAAAAAATTAGGGGT........................................................................2011.001.00----1.00-------------------------------------
..........AGACTGTACAGAAATCCCCGGAGTTTTT....................................................................................................................................................................................................................2811.001.00---------------------------1.00--------------
..............................................................................................................................ATTCTTTCCTTTTTTTTG..........................................................................................................1830.330.33-0.33----------------------------------------
.......................................................................................................TTCTTAACCTAACAAG...................................................................................................................................1630.330.33--0.33---------------------------------------
..........................................................................................ACTTCTTTTATTCTTCTT..............................................................................................................................................1840.250.25---0.25--------------------------------------
...............................................................................................................................TTCTTTCCTTTTTTTTGGG........................................................................................................1960.170.17-----0.17------------------------------------

Antisense strand
ACGAGAGCTCAGACTGTACAGAAATCCCCGGAGTTTTTGTCCACTTCAGAGTCTTCTAGCTTGTTGCAAGATCTACAGCCAAGTGATAGCACTTCTTTTATTCTTCTTAACCTAACAAGAGCAGGTATTCTTTCCTTTTTTTTGGGCTCTGCTTATGCCTAAGAAAAAAATTAGGGGTGGGGCATATTTAACTTAGTCATACTTAAAATAGAAAGAACCTTTATTATTTTATTATTTTGGAGAATTGGTG
..............................................................................................................(((((.(((((.(((........)))))))))))))........................................................................................................
................................................................................................97..................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...........................................................................................................................GGTATTCTTTCCTTTCACC............................................................................................................ 191.000.00-------------------1.00----------------------
.......................................................................................................................................GCAGAGCCCAAAAAAAA.................................................................................................. 1711.001.00---------------1.00--------------------------
................................AGCTAGAAGACTCTGAAGTGGACAAAAAC............................................................................................................................................................................................. 2911.001.00----1.00-------------------------------------
..CGGGGATTTCTGTACAGTCTGAGCTCTC............................................................................................................................................................................................................................ 2811.001.00------------------------------------1.00-----
.................................................AGTCTTCTAGCTTGTTATGA..................................................................................................................................................................................... 201.000.00------------------------1.00-----------------