ID: uc010trt.1_intron_0_0_chr14_58906499_f.5p
GENE: (1)
chr14:58906449-58906698+


(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(2)
B-CELL
(9)
BRAIN
(21)
BREAST
(29)
CELL-LINE
(3)
CERVIX
(2)
FIBROBLAST
(6)
HEART
(6)
LIVER
(1)
OTHER
(64)
SKIN
(1)
XRN.ip

Sense strand
CTGAGAGAAAAATGTTATTCTTAGTAGAAATGGGGAAATATCAAAGAGGAGTAAGTTTAAGAGTTCTGTGATGCCCTTAAAAGTCGACGGGGAAGTCCAGCAGCTGGAGATGGAATGTATTCCTGCCAATTTTACTTAGACTCTCTTAGGGACTCTTCAGTTTTGTCAGTGGTTCCTTTCATTGTTTTCTTTGAGGCCAAATACCGAGCAAATTGGCTAGCCTTCTTTTTTCTTTCAGTATTTAATTAAA
.............................................................(((((((.(((.((((...........))))..)))))).))))......((((....))))...............................................................................................................................
...........................................................60...............................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR343334SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040040(GSM532925)
G612N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
TAX577740(Rovira)
total RNA. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR029127(GSM416756)
A549. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
................................................................TCTGTGATGCCCTTA...........................................................................................................................................................................15852.8852.88-7.756.62-----1.752.751.25---1.62-1.12--------1.381.381.120.121.88---0.88----1.75-0.501.120.621.120.50--0.380.880.380.750.121.120.380.381.00-0.750.251.000.750.120.25-------------0.62------------------------------0.620.620.620.620.250.120.250.620.620.250.50-0.50-0.120.380.25--0.120.25-0.120.250.120.12-0.120.120.120.12----0.120.12-0.120.12-0.12
................................................................TCTGTGATGCCCTTAGG.........................................................................................................................................................................17813.1252.88--0.25-2.12---0.12-0.12---------------0.121.120.250.50---0.12----0.12-0.120.750.120.50-1.500.500.120.38--0.120.25----0.38-0.12--0.88-------------0.25-------------------------------0.250.120.120.50-0.38-------0.25-0.12--0.12--0.12-0.12--------0.12--------
................................................................TCTGTGATGCCCTTAATC........................................................................................................................................................................1826.000.50-----6.00-----------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GTTCTGTGATGCCCTTAGA.........................................................................................................................................................................194.000.00--------3.00----------1.00---------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAGA.........................................................................................................................................................................2013.001.00---1.00--------------------------------------1.00---------------1.00------------------------------------------------------------------------------------------
..............................................................GTTCTGTGATGCCCTTAGAT........................................................................................................................................................................202.000.00---1.00------------------------------------1.00------------------------------------------------------------------------------------------------------------
..............................................................GTTCTGTGATGCCCTTAGACG.......................................................................................................................................................................212.000.00-----------2.00-----------------------------------------------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAACAGG......................................................................................................................................................................2022.000.50-----------------------------------------------1.00--0.50-------------------------------------------------------------0.50------------------------------------
................................................................................AAGTCGACGGGGAAGTCCAGCAGCCGG...............................................................................................................................................272.000.00-------------------------------2.00---------------------------------------------------------------------------------------------------------------------
..............................................................GTTCTGTGATGCCCTTAG..........................................................................................................................................................................182.000.00----------1.00----------------------1.00-------------------------------------------------------------------------------------------------------------------
..............................................................GTTCTGTGATGCCCTTAGATG.......................................................................................................................................................................212.000.00--------------------------------------------------------------------------------------1.00-------------------1.00------------------------------------------
.................................................................................................CAGCAGCTGGAGATGGAATGTATT.................................................................................................................................2411.001.00-------------------------------------------------1.00---------------------------------------------------------------------------------------------------
..............................................................GTTCTGTGATGCCCTTAT..........................................................................................................................................................................181.000.00----------1.00------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................AGCAGCTGGAGATGGAATGTAT..................................................................................................................................2211.001.00------------------------------------------------------------------------------------1.00----------------------------------------------------------------
................................................................................................CCAGCAGCTGGAGATGGAAT......................................................................................................................................2011.001.00---------1.00-------------------------------------------------------------------------------------------------------------------------------------------
...........................................................AGAGTTCTGTGATGCCCTTAGA.........................................................................................................................................................................221.000.00--------------------------1.00--------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTT............................................................................................................................................................................1711.001.00----------1.00------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAG..........................................................................................................................................................................1911.001.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................TCGACGGGGAAGTCCAGCAGCTGGAGATGG.........................................................................................................................................3011.001.00-------------------------------------1.00---------------------------------------------------------------------------------------------------------------
...............................................................TTCTGTGATGCCCTTAGATG.......................................................................................................................................................................201.000.00---------------------------------------------------1.00-------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATA.........................................................................................................................................................................2011.001.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................CTGTGATGCCCTTAA..........................................................................................................................................................................1531.001.00------------------------------0.33-------------------------------------------------------------------------------------0.33-------0.33------------------------
.............................................................AGTTCTGTGATGCCCTTACA.........................................................................................................................................................................2011.001.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTA...........................................................................................................................................................................1811.001.00------------------------------------------------------1.00----------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAGACG.......................................................................................................................................................................1980.6252.88---------------0.38---------0.12----------------------------------------------------------------------------------------------------------------------0.12----
................................................................TCTGTGATGCCCTTAAACTTC.....................................................................................................................................................................2120.500.50------------------------------0.50----------------------------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAAA.........................................................................................................................................................................1720.500.50----------------------------------------------------------------------------------------------------------------------0.50------------------------------
................................................................TCTGTGATGCCCTTAA..........................................................................................................................................................................1620.500.50------------------------------0.50----------------------------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAATGTC......................................................................................................................................................................2020.500.50------------------------------------------------------------------------------------------------------------------------0.50----------------------------
...........................................................AGAGTTCTGTGATGCCC..............................................................................................................................................................................1720.500.50------------------------------------------------------------0.50----------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAGAC........................................................................................................................................................................1880.3852.88---0.25-----------------------------------------------0.12-------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTACA.........................................................................................................................................................................1780.3852.88------------------------------------------0.12---------------------------------0.12--------------------------------------------------------0.12---------------
.................................................................CTGTGATGCCCTTAACC........................................................................................................................................................................1730.331.00----------------------------------------0.33------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCT.............................................................................................................................................................................1630.330.33---------0.33-------------------------------------------------------------------------------------------------------------------------------------------
.................................................................CTGTGATGCCCTTAAC.........................................................................................................................................................................1630.331.00-------------------------------------------------------0.33---------------------------------------------------------------------------------------------
.................................................................CTGTGATGCCCTTAAA.........................................................................................................................................................................1630.330.33-------------------------0.33---------------------------------------------------------------------------------------------------------------------------
.................................................................CTGTGATGCCCTTAAAC........................................................................................................................................................................1730.330.33-----------------------------------------------------------------------------------------------------------0.33-----------------------------------------
.................................................................CTGTGATGCCCTTAAACT.......................................................................................................................................................................1830.330.33--------------------------------------------------------0.33--------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAGCC........................................................................................................................................................................1880.2552.88---------------------------0.25-------------------------------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAGATT.......................................................................................................................................................................1980.2552.88---0.12-----------------------------0.12-------------------------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAGGTG.......................................................................................................................................................................1980.2552.88--------------------------------0.12--------------------------0.12-----------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAGC.........................................................................................................................................................................1780.2552.88-----------------------------------------------------------------------------------------------------------------------------0.25-----------------------
................................................................TCTGTGATGCCCTTAGCTG.......................................................................................................................................................................1980.2552.88--------------------------------0.12----------------------------------------------------------------------------------------------------------0.12---------
..........................................................................................................................................................................................................................AGCCTTCTTTTTTCTTTC..............1840.250.25-------------------------------0.25---------------------------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTATA.........................................................................................................................................................................1780.2552.88--0.12------------------------------------------------------0.12-------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTACAGG.......................................................................................................................................................................1980.1252.88---------0.12-------------------------------------------------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTATGTC.......................................................................................................................................................................1980.1252.88-------------------------------------------------------------------------------------------------------------0.12---------------------------------------
................................................................TCTGTGATGCCCTTATATG.......................................................................................................................................................................1980.1252.88--------------------------------------------------------------------------------------------------------------------------------0.12--------------------
................................................................TCTGTGATGCCCTTAGCT........................................................................................................................................................................1880.1252.88---------------------------------------------------------------------------------------------------------------------------------------------0.12-------
................................................................TCTGTGATGCCCTTAGAG........................................................................................................................................................................1880.1252.88--------------------------------------0.12--------------------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTACT.........................................................................................................................................................................1780.1252.88--------------------------------------------------0.12--------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTAGGT........................................................................................................................................................................1880.1252.88------------------------------------------------0.12----------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTACAAC.......................................................................................................................................................................1980.1252.88------------------------------------------------------------------------------------------------------------------------------------------0.12----------
................................................................TCTGTGATGCCCTTAGTTG.......................................................................................................................................................................1980.1252.88----------------0.12------------------------------------------------------------------------------------------------------------------------------------
................................................................TCTGTGATGCCCTTACATG.......................................................................................................................................................................1980.1252.88--------------------------------------------------------------------------------------------------------------------------------0.12--------------------
................................................................TCTGTGATGCCCTTAGATA.......................................................................................................................................................................1980.1252.88---------------------------------------------------------------------------------------------------------------------------------------------------0.12-

Antisense strand
CTGAGAGAAAAATGTTATTCTTAGTAGAAATGGGGAAATATCAAAGAGGAGTAAGTTTAAGAGTTCTGTGATGCCCTTAAAAGTCGACGGGGAAGTCCAGCAGCTGGAGATGGAATGTATTCCTGCCAATTTTACTTAGACTCTCTTAGGGACTCTTCAGTTTTGTCAGTGGTTCCTTTCATTGTTTTCTTTGAGGCCAAATACCGAGCAAATTGGCTAGCCTTCTTTTTTCTTTCAGTATTTAATTAAA
.............................................................(((((((.(((.((((...........))))..)))))).))))......((((....))))...............................................................................................................................
...........................................................60...............................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR343334SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040040(GSM532925)
G612N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
TAX577740(Rovira)
total RNA. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR029127(GSM416756)
A549. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.............................................................AGTTCTGTGATGCCCTTATTGT....................................................................................................................................................................... 22133.000.005.00-----4.00------1.00----2.00-1.001.00-1.001.00-------1.00-2.002.001.00--1.00---------------------------1.00------1.001.00---------1.00-1.001.00-1.00-----1.00------1.00-1.00-------------------------------------------
.............................................................AGTTCTGTGATGCCCTTTGT......................................................................................................................................................................... 20325.000.001.00---4.00-2.00-----2.001.00----1.00-1.00-2.001.001.00-------1.00-----------------------1.00---------1.00--------------1.001.00--------1.00-1.001.001.00-----------------------------------------------------
...........................................................AGAGTTCTGTGATGCCCTTAGT......................................................................................................................................................................... 2215.000.0014.00--------------1.00-------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATCGT....................................................................................................................................................................... 2219.000.006.00--------------1.00---1.00-----------------------------------------------------------------------------1.00---------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATTG........................................................................................................................................................................ 2115.000.00-----------1.00----------1.00----------------------------------------------1.00-------1.00-----1.00-----------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATTGA....................................................................................................................................................................... 2214.000.00-------1.00-------------1.00--------------1.00--1.00-------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTGT.......................................................................................................................................................................... 194.000.00-------------2.00------1.00--1.00-----------------------------------------------------------------------------------------------------------------------------
...........................................................AGAGTTCTGTGATGCGT.............................................................................................................................................................................. 173.000.001.00----------------------------------------------------------------1.00-----------------------1.00-----------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATTGC....................................................................................................................................................................... 2213.000.003.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATCGA....................................................................................................................................................................... 2213.000.003.00----------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................AGAGTTCTGTGATGCCCTTAG.......................................................................................................................................................................... 213.000.00----------------------------2.00--------------------------------1.00---------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATGGT....................................................................................................................................................................... 2213.000.002.00---------------------------------------------------------------------------------------------------1.00------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTTGA......................................................................................................................................................................... 2033.000.00-------------------------1.00------------------1.00--------------------------1.00-----------------------------------------------------------------------------
....................................................................................................................................................................GTCAGTGGTTCCTTTG...................................................................... 162.000.00----------------------------------------------1.00-------------------------1.00----------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATTCT....................................................................................................................................................................... 2212.000.00----------------------------------------------------------------------1.00---------------------------------1.00--------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAGGGT....................................................................................................................................................................... 2212.000.002.00----------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................AGAGTTCTGTGATGCCCTTAGTT........................................................................................................................................................................ 232.000.002.00----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................TTCTGTGATGCCCTTAGT......................................................................................................................................................................... 182.000.00-----------------2.00-----------------------------------------------------------------------------------------------------------------------------------
............................................................GAGTTCTGTGATGCCCTTAGG......................................................................................................................................................................... 212.000.001.00-----------1.00----------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAGTGT....................................................................................................................................................................... 2212.000.002.00----------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................AGAGTTCTGTGATGCG............................................................................................................................................................................... 162.000.00------------------------------1.00----------------------1.00-----------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTTT.......................................................................................................................................................................... 191.000.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................TTCCTGCCAATTTTAGAG................................................................................................................. 181.000.00-----------------------------------------------------------------------------------------------------1.00-----------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAGAGT....................................................................................................................................................................... 2211.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................TAAGGGCATCACAGAACT........................................................................................................................................................................... 1811.001.00-------------------------------------------------------------------------1.00---------------------------------------------------------------------------
................................................................................AAGTCGACGGGGAAGGGAT....................................................................................................................................................... 191.000.00-------------------------------------1.00---------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATGCT....................................................................................................................................................................... 2211.000.00-----------------1.00-----------------------------------------------------------------------------------------------------------------------------------
............................................................GAGTTCTGTGATGCCCTTACGT........................................................................................................................................................................ 221.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTGG.......................................................................................................................................................................... 1931.000.00------------1.00----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................TCAGTGGTTCCTTTCTGC................................................................... 181.000.00--------------------------------------------------------------------1.00--------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAATG........................................................................................................................................................................ 2111.000.00------------------------------------------------------------------------------1.00----------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAAGCT....................................................................................................................................................................... 2211.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTTTT......................................................................................................................................................................... 2031.000.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------------
..........................................AAAGAGGAGTAAGTTATG.............................................................................................................................................................................................. 181.000.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTTGG......................................................................................................................................................................... 2031.000.00------------------------1.00----------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAGG......................................................................................................................................................................... 2011.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTG........................................................................................................................................................................... 1831.000.00--------------------------------------------------------------------------------1.00--------------------------------------------------------------------
......................................................................................................................................................................................................AAATACCGAGCAAATCTCT................................. 191.000.00--------------------------------------------------------------------------------------------------1.00--------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATTAT....................................................................................................................................................................... 2211.000.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................TCAGTGGTTCCTTTCATGC.................................................................. 191.000.00--------------1.00--------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAGGGA....................................................................................................................................................................... 2211.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAT.......................................................................................................................................................................... 1911.000.00---------------------1.00-------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................TCAGTGGTTCCTTTCATG................................................................... 181.000.00--------------1.00--------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTTG.......................................................................................................................................................................... 1931.000.00-------------------1.00---------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATGT........................................................................................................................................................................ 2111.000.00---------------1.00-------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAGGTT....................................................................................................................................................................... 2211.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATTGG....................................................................................................................................................................... 2211.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------
............................................................GAGTTCTGTGATGCCCTTAGGT........................................................................................................................................................................ 221.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................CAGTGGTTCCTTTCATAGC................................................................. 191.000.00------------------------------------------------------------------------------------------------------1.00----------------------------------------------
.............................................................AGTTCTGTGATGCCCTTAATGT....................................................................................................................................................................... 2211.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTTAC......................................................................................................................................................................... 2031.000.00----------------------------------------------------------------1.00------------------------------------------------------------------------------------
...........................................................AGAGTTCTGTGATGCCCG............................................................................................................................................................................. 1821.000.00----------------1.00------------------------------------------------------------------------------------------------------------------------------------
.TGAGAGAAAAATGTTACTGT..................................................................................................................................................................................................................................... 201.000.00---------------------------------------------------------------1.00-------------------------------------------------------------------------------------
.....................................................................................................................................................................TCAGTGGTTCCTTTCTG.................................................................... 171.000.00-------------------------------------------------------------------------------1.00---------------------------------------------------------------------
............................................................GAGTTCTGTGATGCCCTTACTT........................................................................................................................................................................ 221.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................TCTTCAGTTTTGTCATGCC.............................................................................. 191.000.00---------------------------------------------------------------------------------------------------1.00-------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATCTC....................................................................................................................................................................... 2211.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
............................................................GAGTTCTGTGATGCCCTTAGGTT....................................................................................................................................................................... 231.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATCGC....................................................................................................................................................................... 2211.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
............................................................GAGTTCTGTGATGCCCTTAGCC........................................................................................................................................................................ 221.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATTTA....................................................................................................................................................................... 2211.000.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATTTT....................................................................................................................................................................... 2211.000.00--------------------------------------------------------------------------------------------1.00--------------------------------------------------------
...........................................................AGAGTTCTGTGATGCCCTG............................................................................................................................................................................ 191.000.00----------------1.00------------------------------------------------------------------------------------------------------------------------------------
.............................................................AGTTCTGTGATGCCCTTATAAT....................................................................................................................................................................... 2211.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................TGAAAGAAAAAAGAAGGC............. 1840.250.25---------0.25-------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................ATTGGCAGGAATACA........................................................................................................................ 1580.120.12---------------------------------------------------------------0.12-------------------------------------------------------------------------------------