| (1) BREAST | (11) CELL-LINE | (2) CERVIX | (4) LIVER | (3) OTHER | (3) SKIN | (1) XRN.ip |
| GCACCAAAAAGCACAACTGACAAAAAATAGATGAGACTTCATCACAATTAAATATGTTTGTGTTTCAAAGGATAATACAAAGAAAGTAAAAAGACAAGAGAATGGGGGATATTTTTCAACAGTTATCCTTACATATCCTAAGATCTTTTTATTCCTATTTTTTCAGCTGTGACTAATTTCTAATTTAAATGTTGTTTCAGTGCTGCTGTGGTATGTTTGGGTTCCTTGTACAAGAAGTTGGGTAGAATAC ......................................................................................................................................................................(((.(((..((((.......))))...))).))).................................................. ...........................................................................................................................................140.........................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR029131(GSM416760) MCF7. (cell line) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | GSM532887(GSM532887) G761N. (cervix) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR343335 | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189784 | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR343336 | TAX577739(Rovira) total RNA. (breast) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR040006(GSM532891) G601N. (cervix) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR029125(GSM416754) U2OS. (cell line) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................CTTTTTATTCCTATTTGA........................................................................................ | 18 | 40.00 | 0.00 | 35.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | |
| ................................................................................................................................................CTTTTTATTCCTATTTGAA....................................................................................... | 19 | 6.00 | 0.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................TCATCACAATTAAATCTG.................................................................................................................................................................................................. | 18 | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................TTATCCTTACATATCCTAAGATCTTTTTAC.................................................................................................. | 30 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................AGAAGTTGGGTAGAATAC | 18 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................TTTATTCCTATTTTTTCGT.................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................CAAGAAGTTGGGTAGAA... | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TTTAAATGTTGTTTCAGT................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TTTTATTCCTATTTTTCTAG.................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ......................................................................................................................................ATCCTAAGATCTTTTTATT................................................................................................. | 19 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TGCTGTGGTATGTTTTTCC............................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................GTACAAGAAGTTGGGTAGAAA.. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ....................................................................................................................................................TTATTCCTATTTTTTCATTAG................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ....................................................................................................................................................TTATTCCTATTTTTTCACTAG................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ................................................................................................................................................CTTTTTATTCCTATTCGAA....................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................TTATCCTTACATATCCTAAGATCTTTATAC.................................................................................................. | 30 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................ATCTTTTTATTCCTATGTGA........................................................................................ | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................AGAAAGTAAAAAGACTCA........................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ............................................CAATTAAATATGTTTGTG............................................................................................................................................................................................ | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| .......................................................................................................................................................................................................................................AAGAAGTTGGGTAGAA... | 16 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 |
| GCACCAAAAAGCACAACTGACAAAAAATAGATGAGACTTCATCACAATTAAATATGTTTGTGTTTCAAAGGATAATACAAAGAAAGTAAAAAGACAAGAGAATGGGGGATATTTTTCAACAGTTATCCTTACATATCCTAAGATCTTTTTATTCCTATTTTTTCAGCTGTGACTAATTTCTAATTTAAATGTTGTTTCAGTGCTGCTGTGGTATGTTTGGGTTCCTTGTACAAGAAGTTGGGTAGAATAC ......................................................................................................................................................................(((.(((..((((.......))))...))).))).................................................. ...........................................................................................................................................140.........................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR029131(GSM416760) MCF7. (cell line) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | GSM532887(GSM532887) G761N. (cervix) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR343335 | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189784 | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR343336 | TAX577739(Rovira) total RNA. (breast) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR040006(GSM532891) G601N. (cervix) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR029125(GSM416754) U2OS. (cell line) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................ATTTTTCAACAGTTATCCC......................................................................................................................... | 19 | 5.00 | 0.00 | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTCTAATTTAAATGTTCTA...................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................TTCAACAGTTATCCTCACA..................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................TAAATATGTTTGTGTTAAG....................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................TTGTTTCAGTGCTGCTGTG........................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................TTTTTCAGCTGTGACTCTC......................................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................TCCTAAGATCTTTTTCATA................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ................................................................................................................................................................................................TGTTTCAGTGCTGCTCCA........................................ | 18 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |