ID: uc010tlh.1_intron_9_0_chr14_20845913_r
GENE: TEP1(10)
chr14:20845863-20846232-


(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(3)
B-CELL
(3)
BRAIN
(12)
BREAST
(11)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(8)
LIVER
(1)
OTHER
(16)
SKIN
(1)
UTERUS

Sense strand
TTTTCCTGCATGCGGGTTGCCAGTTACTGACGGCTGGAGAGGATGGCAAGGTCAGCTTGCAGAGGGCTGGTGGTGGGTTGTGAGGAGGAGTAGCAAAGGCAAAGAATATCTTGGTGGGGGTGGGGGTCCTTTGTCGAGGAGACTGTGGAGGAGCTTGGATTGCAGGAACCACGGGGAGAGGGGTGCCGCTGTGTGCAGGGGCAGCTCTCATGAGAAGAGTCTCTGGAAGGAGGACTTTAATGGGGGTGGCTGTAACTCAAAACAGGAAGGAGGACCGCGTGGTGGAGGTGGTATCCTTAAGCCCTTTTCTTGGTTCCCAGGTTCAGGTGTGGTCAGGGTCTCTGGGTCGGCCCCGTGGGCACCTGGGTTC
.....................................................................................................................................(((((....)).)))......(((..((((((..(((.......(((((.((((.(((....))).)))).)))))......(((((((((....)))).)))))......)))..))))))..)))..............................................................................................................
.....................................................................................................................................134............................................................................................................................261...........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784TAX577580(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577741(Rovira)
total RNA. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040011(GSM532896)
G529T. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................................................................................................................................AATGGGGGTGGCTGTAACC.................................................................................................................1914.002.00-3.00-------------------------------1.00-----------------------------
..........................................................................................................................................GAGACTGTGGAGGAGCG.......................................................................................................................................................................................................................174.000.00----2.00-----2.00----------------------------------------------------
.........................ACTGACGGCTGGAGAGGATG.....................................................................................................................................................................................................................................................................................................................................2014.004.004.00--------------------------------------------------------------
..............................................................................................................................................................................................................................................AATGGGGGTGGCTGTAACCCA...............................................................................................................2112.002.00-2.00-------------------------------------------------------------
.........................ACTGACGGCTGGAGAGGA.......................................................................................................................................................................................................................................................................................................................................1812.002.00-----------------------1.00-----------------------1.00---------------
.........................ACTGACGGCTGGAGAGGATGGC...................................................................................................................................................................................................................................................................................................................................2212.002.00---------------1.00------------------1.00----------------------------
.................................................................GCTGGTGGTGGGTTGTGTTTT............................................................................................................................................................................................................................................................................................212.000.00-------------1.00-1.00-----------------------------------------------
.........................ACTGACGGCTGGAGAGGATGGCA..................................................................................................................................................................................................................................................................................................................................2312.002.00------------------1.00-----------------1.00--------------------------
..............................................................................................................................................................................................................................................AATGGGGGTGGCTGTAAC..................................................................................................................1812.002.00------------------------------1.00----------1.00---------------------
.................................................................GCTGGTGGTGGGTTGTGGTGT............................................................................................................................................................................................................................................................................................212.000.00-------1.00-----1.00-------------------------------------------------
.....................AGTTACTGACGGCTGGAGAGGAT......................................................................................................................................................................................................................................................................................................................................2311.001.00------------------------------------------1.00--------------------
...........................................................................................................................................AGACTGTGGAGGAGCGGA.....................................................................................................................................................................................................................181.000.00--1.00------------------------------------------------------------
...........................TGACGGCTGGAGAGGATGG....................................................................................................................................................................................................................................................................................................................................1911.001.001.00--------------------------------------------------------------
............................................................AGAGGGCTGGTGGTGAAA....................................................................................................................................................................................................................................................................................................181.000.00----------------------------1.00----------------------------------
............................................................................................................................................................................................................................................TTAATGGGGGTGGCTGTAACTCTG..............................................................................................................241.000.00----------------------------------------1.00----------------------
.........................................................................................................................................GGAGACTGTGGAGGAGCGG......................................................................................................................................................................................................................1931.000.33--0.33--------------0.67---------------------------------------------
.......................TTACTGACGGCTGGAGAGGATGGCAA.................................................................................................................................................................................................................................................................................................................................2611.001.00-----1.00---------------------------------------------------------
.........................................................................................................................................................CTTGGATTGCAGGAACTCTG.....................................................................................................................................................................................................201.000.00-------------------------------------------1.00-------------------
.........................................................................TGGGTTGTGAGGAGGATGTT.....................................................................................................................................................................................................................................................................................201.000.00--------------------1.00------------------------------------------
............................GACGGCTGGAGAGGATGG....................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------1.00------------------
....................................................................................................................................................................................................................................................GGTGGCTGTAACTCAGG.............................................................................................................171.000.00-----------------------------------1.00---------------------------
......................................................................................................................................................................AACCACGGGGAGAGGGA...........................................................................................................................................................................................171.000.00-----------1.00---------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................GGTCGGCCCCGTGGGG..........161.000.00------------1.00--------------------------------------------------
..........................................................................................................................................GAGACTGTGGAGGAGCGCGC....................................................................................................................................................................................................................201.000.00----------------------------------------------1.00----------------
.............................................................................................................................................................................................................................................................................................................CCCTTTTCTTGGTTCCCAG..................................................1911.001.00-------------------------------------------------1.00-------------
.................................................................GCTGGTGGTGGGTTGTGG...............................................................................................................................................................................................................................................................................................181.000.00--------------1.00------------------------------------------------
....................................................................................................................................................................................................................................................GGTGGCTGTAACTCAGC.............................................................................................................171.000.00--------------------------1.00------------------------------------
.........................ACTGACGGCTGGAGAGGATTGCA..................................................................................................................................................................................................................................................................................................................................231.000.00--------------1.00------------------------------------------------
...................................................................TGGTGGTGGGTTGTGTAT.............................................................................................................................................................................................................................................................................................181.000.00---1.00-----------------------------------------------------------
.................................................................GCTGGTGGTGGGTTGTGTTG.............................................................................................................................................................................................................................................................................................201.000.00--------1.00------------------------------------------------------
.................................................................GCTGGTGGTGGGTTGTGTTGA............................................................................................................................................................................................................................................................................................211.000.00---------------------------------------------1.00-----------------
........................TACTGACGGCTGGAGAGGATGT....................................................................................................................................................................................................................................................................................................................................221.000.00-----1.00---------------------------------------------------------
.................................................................GCTGGTGGTGGGTTGTGGTTT............................................................................................................................................................................................................................................................................................211.000.00---------1.00-----------------------------------------------------
......................GTTACTGACGGCTGGAGAGGATGGCAAG................................................................................................................................................................................................................................................................................................................................2811.001.00----------------------1.00----------------------------------------
..................................................................................................................................................................................AGGGGTGCCGCTGTGTGCGTGT..........................................................................................................................................................................221.000.00----------------1.00----------------------------------------------
.........................................................................................................................................................................................................................................................................GAAGGAGGACCGCGTTT........................................................................................171.000.00--------------------------------------1.00------------------------
.................................................................GCTGGTGGTGGGTTGTGGT..............................................................................................................................................................................................................................................................................................191.000.00-------1.00-------------------------------------------------------
.................................................................GCTGGTGGTGGGTTGTAC...............................................................................................................................................................................................................................................................................................181.000.00-----------------------------1.00---------------------------------
..........................................................GCAGAGGGCTGGTGGTGGGTG...................................................................................................................................................................................................................................................................................................211.000.00------------------------------------------------1.00--------------
.........................ACTGACGGCTGGAGAGGATGGCAT.................................................................................................................................................................................................................................................................................................................................2411.002.00-----------1.00---------------------------------------------------
...........................................................................................................................................AGACTGTGGAGGAGCGGCG....................................................................................................................................................................................................................191.000.00--1.00------------------------------------------------------------
.................................................................GCTGGTGGTGGGTTGTGTAGT............................................................................................................................................................................................................................................................................................211.000.00--------1.00------------------------------------------------------
.................................................................GCTGGTGGTGGGTTGTGGGTT............................................................................................................................................................................................................................................................................................211.000.00-------------------------------------1.00-------------------------
...........................................................................................................................................AGACTGTGGAGGAGCG.......................................................................................................................................................................................................................161.000.00------------------------1.00--------------------------------------
.....................AGTTACTGACGGCTGGAGAGGATG.....................................................................................................................................................................................................................................................................................................................................2411.001.00-------------------1.00-------------------------------------------
...................................................................................................................................TGTCGAGGAGACTGTGGAGGAGCTTGGACTG................................................................................................................................................................................................................311.000.00------------1.00--------------------------------------------------
.................................................................GCTGGTGGTGGGTTGTGTAT.............................................................................................................................................................................................................................................................................................201.000.00---------1.00-----------------------------------------------------
..........................................................................................................................................GAGACTGTGGAGGAGCGG......................................................................................................................................................................................................................181.000.00-----------------1.00---------------------------------------------
.......GCATGCGGGTTGCCAGTTACTGACGGCTGGGGA..........................................................................................................................................................................................................................................................................................................................................331.000.00----------------1.00----------------------------------------------
.........................................................................................................................................GGAGACTGTGGAGGAGCGGCG....................................................................................................................................................................................................................2131.000.33--0.67-0.33----------------------------------------------------------
.................................................................GCTGGTGGTGGGTTGTGTTGT............................................................................................................................................................................................................................................................................................211.000.00---1.00-----------------------------------------------------------
............................................................AGAGGGCTGGTGGTGG......................................................................................................................................................................................................................................................................................................1660.670.67-------------------0.17-------------------------------------0.170.17-0.17--
.........................................................................................................................................GGAGACTGTGGAGGAGCGGC.....................................................................................................................................................................................................................2030.670.33--------------------------------------------------0.67------------
..........................................................GCAGAGGGCTGGTGGTGGGAA...................................................................................................................................................................................................................................................................................................2130.670.33---------------------------------------------------0.67-----------
...........................................................CAGAGGGCTGGTGGTGGG.....................................................................................................................................................................................................................................................................................................1830.670.67----------------------------------------------------0.67----------
............................................................AGAGGGCTGGTGGTGGG.....................................................................................................................................................................................................................................................................................................1760.500.50--------------------0.17-----------------------------------0.17--0.17---
.........................................................................................................................................GGAGACTGTGGAGGAGC........................................................................................................................................................................................................................1730.330.33-----------------------------------------------------0.33---------
..........................................................GCAGAGGGCTGGTGGTGG......................................................................................................................................................................................................................................................................................................1830.330.33--0.33------------------------------------------------------------
..........................................................GCAGAGGGCTGGTGGTGGG.....................................................................................................................................................................................................................................................................................................1930.330.33-------------------------------------------------------0.33-------
..........................................................GCAGAGGGCTGGTGGTG.......................................................................................................................................................................................................................................................................................................1730.330.33------------------------------------------------------0.33--------
.........................................................................................................................................GGAGACTGTGGAGGAG.........................................................................................................................................................................................................................1670.140.14---------------------0.14-----------------------------------------
..........................................................................................................................................................TTGGATTGCAGGAAC.........................................................................................................................................................................................................1570.140.14-------------------------------------------------------------0.14-

Antisense strand
TTTTCCTGCATGCGGGTTGCCAGTTACTGACGGCTGGAGAGGATGGCAAGGTCAGCTTGCAGAGGGCTGGTGGTGGGTTGTGAGGAGGAGTAGCAAAGGCAAAGAATATCTTGGTGGGGGTGGGGGTCCTTTGTCGAGGAGACTGTGGAGGAGCTTGGATTGCAGGAACCACGGGGAGAGGGGTGCCGCTGTGTGCAGGGGCAGCTCTCATGAGAAGAGTCTCTGGAAGGAGGACTTTAATGGGGGTGGCTGTAACTCAAAACAGGAAGGAGGACCGCGTGGTGGAGGTGGTATCCTTAAGCCCTTTTCTTGGTTCCCAGGTTCAGGTGTGGTCAGGGTCTCTGGGTCGGCCCCGTGGGCACCTGGGTTC
.....................................................................................................................................(((((....)).)))......(((..((((((..(((.......(((((.((((.(((....))).)))).)))))......(((((((((....)))).)))))......)))..))))))..)))..............................................................................................................
.....................................................................................................................................134............................................................................................................................261...........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784TAX577580(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577741(Rovira)
total RNA. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040011(GSM532896)
G529T. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................GAGGAGACTGTGGAGGCCC........................................................................................................................................................................................................................ 191.000.00---------------------------1.00-----------------------------------
................................................................................................................................................................................................................................................................................................................................GTTCAGGTGTGGTCATCTG............................... 191.000.00-------------------------1.00-------------------------------------
.................................................................................................................................................................GCAGGAACCACGGGGG................................................................................................................................................................................................. 161.000.00---------------------1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................................CCCTTTTCTTGGTTCCCT................................................... 181.000.00---------------------------------------1.00-----------------------
...........................................................................................................................................................................................................................................................................................................................................GTCAGGGTCTCTGGGTTTGT................... 201.000.00-------------------------------1.00-------------------------------
.....................................................................................................................GGGTGGGGGTCCTTTG............................................................................................................................................................................................................................................. 161.000.00------1.00--------------------------------------------------------
......................................................................................................................GGTGGGGGTCCTTTGAG........................................................................................................................................................................................................................................... 171.000.00------1.00--------------------------------------------------------
.................................................................................................................GTGGGGGTGGGGGTCGGG............................................................................................................................................................................................................................................... 181.000.00---1.00-----------------------------------------------------------
.................................................................................................................................................................................................................................................................................................GGTATCCTTAAGCCCTTT............................................................... 181.000.00--------------------------------1.00------------------------------
...................................................................................................................................CACAGTCTCCTCGACA............................................................................................................................................................................................................................... 1620.500.50------------------0.50--------------------------------------------
......................................................................CCTCACAACCCACCA............................................................................................................................................................................................................................................................................................. 1590.110.11--------------------------------------------------------------0.11